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Function vs. Taxonomy: The Case of Fungi Mitochondria ATP Synthase Genes

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Bioinformatics and Biomedical Engineering (IWBBIO 2019)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 11465))

Abstract

We studied the relations between triplet composition of the family of mitochondrial atp6, atp8 and atp9 genes, their function, and taxonomy of the bearers. The points in 64-dimensional metric space corresponding to genes have been clustered. It was found the points are separated into three clusters corresponding to those genes. 223 mitochondrial genomes have been enrolled into the database.

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Notes

  1. 1.

    http://bioinfo-out.curie.fr/projects/vidaexpert/.

  2. 2.

    An advanced version of K-means yields the maximal number of distinguishable classes, see Sect. 3.

  3. 3.

    With respect to a minor deterioration by other genes.

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Acknowledgement

We are thankful to Reviewer whose remarks made the paper apparently better.

Author information

Authors and Affiliations

  1. Institute of Computational Modelling of SB RAS, Akademgorodok, 660036, Krasnoyarsk, Russia

    Michael Sadovsky

  2. Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prosp., 79, 660049, Krasnoyarsk, Russia

    Michael Sadovsky, Victory Fedotovskaya, Anna Kolesnikova, Tatiana Shpagina & Yulia Putintseva

  3. Laboratory of Genomics and Biotechnology, Federal Research Center RAS, Krasnoyarsk, Russia

    Anna Kolesnikova

Authors
  1. Michael Sadovsky
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  2. Victory Fedotovskaya
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  3. Anna Kolesnikova
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  4. Tatiana Shpagina
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  5. Yulia Putintseva
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Corresponding author

Correspondence to Michael Sadovsky .

Editor information

Editors and Affiliations

  1. Department of Computer Architecture and Computer Technology Higher Technical School of Information Technology and Telecommunications Engineering, CITIC-UGR, Granada, Spain

    Ignacio Rojas

  2. ETSIIT, University of Granada, Granada, Spain

    Olga Valenzuela

  3. CITIC-UGR, University of Granada, Granada, Spain

    Fernando Rojas

  4. Fundacion Progreso y Salud, Granada, Spain

    Francisco Ortuño

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Sadovsky, M., Fedotovskaya, V., Kolesnikova, A., Shpagina, T., Putintseva, Y. (2019). Function vs. Taxonomy: The Case of Fungi Mitochondria ATP Synthase Genes. In: Rojas, I., Valenzuela, O., Rojas, F., Ortuño, F. (eds) Bioinformatics and Biomedical Engineering. IWBBIO 2019. Lecture Notes in Computer Science(), vol 11465. Springer, Cham. https://doi.org/10.1007/978-3-030-17938-0_30

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  • DOI: https://doi.org/10.1007/978-3-030-17938-0_30

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-17937-3

  • Online ISBN: 978-3-030-17938-0

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