Skip to main content

Impact of Carbon Nanotubes on HDL-Like Structures: Computer Simulations

  • Conference paper
  • First Online:
Nanocomposites, Nanostructures, and Their Applications (NANO 2018)

Part of the book series: Springer Proceedings in Physics ((SPPHY,volume 221))

Included in the following conference series:

  • 502 Accesses

Abstract

We have performed a series of computer simulations to examine the interaction between carbon nanotube and nascent high-density lipoprotein. Carbon nanotube was pushed into the lipoprotein by means of steered molecular dynamics simulations. The force and work required for this operation were estimated. The obtained results suggest that the carbon nanotubes might be utilized as nanochannels to insert or extract molecules from lipoproteins.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 119.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Rader DJ, Alexander ET, Weibel GL, Billheimer J, Rothblat GH (2009) The role of reverse cholesterol transport in animals and humans and relationship to atherosclerosis. J Lipid Res 50. Suppl:S189–S194. https://doi.org/10.1194/jlr.R800088-JLR200

    Article  Google Scholar 

  2. Jones MK, Zhang L, Catte A, Li L, Oda MN, Ren G, Segrest JP (2010) Assessment of the validity of the double superhelix model for reconstituted high density lipoproteins a combined computational-experimental approach. J Biol Chem 285:41161–41171. https://doi.org/10.1074/jbc.M110.187799

    Article  Google Scholar 

  3. Gogonea V, Gerstenecker GS, Wu Z, Lee X, Topbas C, Wagner MA, Tallant TC, Smith JD, Callow P, Pipich V, Malet H, Schoehn G, DiDonato JA, Hazen SL (2013) The low-resolution structure of nHDL reconstituted with DMPC with and without cholesterol reveals a mechanism for particle expansion. J Lipid Res 54:966–983. https://doi.org/10.1194/jlr.M032763

    Article  Google Scholar 

  4. Allen TM, Cullis PR (2013) Liposomal drug delivery systems: from concept to clinical applications. Adv Drug Deliv Rev 65:36–48. https://doi.org/10.1016/j.addr.2012.09.037

    Article  Google Scholar 

  5. Liu X, Suo R, Xiong S-L, Zhang Q-H, Yi G-H (2013) HDL drug carriers for targeted therapy. Clin Chim Acta Int J Clin Chem 415:94–100. https://doi.org/10.1016/j.cca.2012.10.008

    Article  Google Scholar 

  6. Gagner J, Johnson H, Watkins E, Li Q, Terrones M, Majewski J (2006) Carbon nanotube supported single phospholipid bilayer. Langmuir 22:10909–10911. https://doi.org/10.1021/la062038g

    Article  Google Scholar 

  7. Jin H, Heller DA, Sharma R, Strano MS (2009) Size-dependent cellular uptake and expulsion of single-walled carbon nanotubes: single particle tracking and a generic uptake model for nanoparticles. ACS Nano 3:149–158. https://doi.org/10.1021/nn800532m

    Article  Google Scholar 

  8. Porter AE, Gass M, Bendall JS, Muller K, Goode A, Skepper JN, Midgley PA, Welland M (2009) Uptake of noncytotoxic acid-treated single-walled carbon nanotubes into the cytoplasm of human macrophage cells. ACS Nano 3:1485–1492. https://doi.org/10.1021/nn900416z

    Article  Google Scholar 

  9. Raczynski P, Górny K, Pabiszczak M, Gburski Z (2013) Nanoindentation of biomembrane by carbon nanotubes - MD simulation. Comput Mater Sci 70:13–18. https://doi.org/10.1016/j.commatsci.2012.12.031

    Article  Google Scholar 

  10. Raczyńska V, Raczyński P, Górny K, Gburski Z (2016) Nanoindentation of DMPC layer by nanotubes of various diameters. Fesenko O, Yatsenko, L. (red.) Nanophysics, nanophotonics, surface studies, and applications 23–31. Springer International Publishing

    Google Scholar 

  11. Raczyński P, Górny K, Raczyńska V, Pabiszczak M, Dendzik Z, Gburski Z (2018) On the impact of nanotube diameter on biomembrane indentation – computer simulations study. Biochim Biophys Acta BBA – Biomembr 1860:310–318. https://doi.org/10.1016/j.bbamem.2017.10.030

    Article  Google Scholar 

  12. Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kalé L, Schulten K (2005) Scalable molecular dynamics with NAMD. J Comput Chem 26:1781–1802. https://doi.org/10.1002/jcc.20289

    Article  Google Scholar 

  13. Won CY, Aluru NR (2008) Structure and dynamics of water confined in a boron nitride nanotube. J Phys Chem C 112:1812–1818. https://doi.org/10.1021/jp076747u

    Article  Google Scholar 

  14. Klauda JB, Venable RM, Freites JA, O’Connor JW, Tobias DJ, Mondragon-Ramirez C, Vorobyov I, MacKerell AD, Pastor RW (2010) Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types. J Phys Chem B 114:7830–7843. https://doi.org/10.1021/jp101759q

    Article  Google Scholar 

  15. Vanommeslaeghe K, Hatcher E, Acharya C, Kundu S, Zhong S, Shim J, Darian E, Guvench O, Lopes P, Vorobyov I, Mackerell AD Jr (2010) CHARMM general force field: a force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields. J Comput Chem 31:671–690. https://doi.org/10.1002/jcc.21367

    Article  Google Scholar 

  16. Yu W, He X, Vanommeslaeghe K, MacKerell AD (2012) Extension of the CHARMM general force field to sulfonyl-containing compounds and its utility in biomolecular simulations. J Comput Chem 33:2451–2468. https://doi.org/10.1002/jcc.23067

    Article  Google Scholar 

Download references

Acknowledgments

This research was supported in part by PAAD Infrastructure co-financed by Operational Program Innovative Economy, Objective 2.3.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Przemysław Raczyński .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Pabiszczak, M., Górny, K., Raczyński, P., Gburski, Z. (2019). Impact of Carbon Nanotubes on HDL-Like Structures: Computer Simulations. In: Fesenko, O., Yatsenko, L. (eds) Nanocomposites, Nanostructures, and Their Applications. NANO 2018. Springer Proceedings in Physics, vol 221. Springer, Cham. https://doi.org/10.1007/978-3-030-17759-1_32

Download citation

Publish with us

Policies and ethics