Abstract
Prunus is an economically important fruit tree genus and includes many stone fruit trees such as peach (Prunus persica Batsch), apricot, Japanese apricot (Prunus mume), sweet cherry (Prunus avium L.), European plum (Prunus domestica L.), Japanese plum (Prunus salicina Lindl.) and almond [Prunus dulcis (Mill.) D. A. Webb.]. The characterisation of genes associated with agriculturally important traits such as fruit ripening, dormancy, self-incompatibility, fruit quality and various other developmental processes is important to improve Prunus breeding programmes. Based on high-density molecular genetic maps, many genes are located on the genome, and subsequently, most of them were fine-mapped and further identified by positional cloning. Currently, with the availability of the P. mume genome sequence, the identification of new genes is significantly accelerated.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Barba P, Cadle-Davidson L, Harriman J, Glaubitz JC, Brooks S, Hyma K et al (2014) Grapevine powdery mildew resistance and susceptibility loci identified on a high-resolution SNP map. Theor Appl Genet 127(1):73–84
Bielenberg DG, Wang YE, Li Z, Zhebentyayeva T, Fan S, Reighard GL et al (2008) Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation. Tree Genet Genomes 4(3):495–507
Cooke JEK, Eriksson ME, Junttila O (2012) The dynamic nature of bud dormancy in trees: environmental control and molecular mechanisms. Plant, Cell Environ 35(10):1707–1728
Dirlewanger E, Pronier V, Parvery C, Rothan C, Guye A, Monet R (1998) Genetic linkage map of peach [Prunus persica (L.) Batsch] using morphological and molecular markers. Theor Appl Genet 97(5–6):888–895
Entani T, Iwano M, Shiba H, Che FS, Isogai A, Takayama S (2003) Comparative analysis of the self-incompatibility (S-) locus region of Prunus mume: identification of a pollen-expressed F-box gene with allelic diversity. Genes Cells 8(3):203–213
Fang J, Qiao Y, Zhang Z, Chao CT (2005) Genotyping fruiting mei (Prunus mume Sieb. et Zucc.) cultivars using amplified fragment-length polymorphism markers. Amer Soc Hort Sci 40(2):325–328
Gao Z, Wang P, Zhuang W, Zhen Z (2012) Sequence analysis of new S-RNase and SFB alleles in Japanese Apricot (Prunus mume). Plant Mol Biol Rep 31(3):751–762
Gao ZH, Shen ZJ, Han ZH, Fang JG, Zhang YM, Zhang Z (2004) Microsatellite markers and genetic diversity in Japanese apricot (Prunus mume). HortScience 39(7):1571–1574
Gardner KM, Brown P, Cooke TF, Cann S, Costa F, Bustamante C et al (2014) Fast and cost-effective genetic mapping in apple using next-generation sequencing. G3: Genes Genomes Genetics 4(9):1681–1687
Habu T, Matsumoto D, Fukuta K, Esumi T, Tao R, Yaegaki H et al (2008) Cloning and characterization of twelve S-RNase alleles in Japanese apricot (Prunus mume Sieb. et Zucc.). J Jpn Soc Hort Sci 77(4):374–381
Hayashi K, Yoshida H, Ashikawa I (2006) Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes. Theor Appl Genet 113(2):251–260
Heng W, Wu HQ, Chen QX, Wu J, Huang SX, Zhang SL (2008) Identification of S-genotypes and novel S-RNasealleles in Prunus mume. J Hort Sci Biotechnol 83(6):689–694
Heng W, Wu J, Wu HQ, Tao ST, Qi KJ, Gu C et al (2012) Identification and characterisation of SFBs in Prunus mume. Plant Mol Biol Rep 30(4):878–884
Kitamura Y, Habu T, Yamane H, Nishiyama S, Kajita K, Sobue T et al (2018) Identification of QTLs controlling chilling and heat requirements for dormancy release and bud break in Japanese apricot (Prunus mume). Tree Genet Genomes 14(2):101
Kitamura Y, Takeuchi T, Yamane H, Tao R (2016) Simultaneous down-regulation of DORMANCY-ASSOCIATED MADS-box6 and SOC1 during dormancy release in Japanese apricot (Prunus mume) flower buds. J Hort Sci Biotechnol 91(5):476–482
Krawitz P, Rödelsperger C, Jäger M, Jostins L, Bauer S, Robinson PN (2010) Microindel detection in short-read sequence data. Bioinformatics 26(6):722–729
Li X, Shangguan L, Song C, Wang C, Gao Z, Yu H et al (2010) Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers. BMC Genet 11(1):66
Lv L, Huo X, Wen L, Gao Z, Khalil-Ur-Rehman M (2018) Isolation and role of PmRGL2 in GA-mediated floral bud dormancy release in Japanese apricot (Prunus mume Siebold et Zucc.). Front Plant Sci 9:27
Marquat C, Vandamme M, Gendraud M, Pétel G (1999) Dormancy in vegetative buds of peach: relation between carbohydrate absorption potentials and carbohydrate concentration in the bud during dormancy and its release. Sci Hortic 79:151–162. https://doi.org/10.1016/S0304-4238(98)00203-9
Mayer NA, Lemos EGD, Pereira FM, Wickert E (2008) Characterization of three mume genotypes (Prunus mume Sieb. et Zucc.) by RAPD markers. Reva Brasil Fruticult 30(4):1045–1050
Mita S, Kirita C, Kato M, Hyodo H (1999) Expression of ACC synthase is enhanced earlier than that of ACC oxidase during fruit ripening of mume (Prunus mume). Physiol Plant 107(3):319–328
Mita S, Nagai Y, Asai T (2006) Isolation of cDNA clones corresponding to genes differentially expressed in pericarp of mume (Prunus mume) in response to ripening, ethylene and wounding signals. Physiol Plant 128(3):531–545
Pan C-H, Li A-H, Dai Z-Y, Zhang H-X, Liu G-Q, Wang Z-B et al (2008) InDel and SNP markers and their applications in map-based cloning of rice genes. Rice Sci 15(4):251–258
Rinne PLH, Welling A, van der Schoot C (2009) Perennial life style of populus: dormancy cycling and overwintering. Genet Genomics Populus, Springer, New York, NY, USA, pp 171-200. http://link.springer.com/10.1007/978-1-4419-1541-2_9
Ruttink T, Arend M, Morreel K, Storme V, Rombauts S, Fromm J et al (2007) A molecular timetable for apical bud formation and dormancy induction in poplar. Plant Cell 19(8):2370–2390
Shen Y, Ding X, Wang F, Cai B, Gao Z, Zhang Z (2011) Analysis of genetic diversity in Japanese apricot (Prunus mume Sieb. et Zucc.) based on REMAP and IRAP molecular markers. Sci Hort 132:50–58
Shimada T, Haji T, Yamaguchi M, Takeda T, Nomura K, Yoshida M (1994) Classification of mume (Prunus mume Sieb. et Zucc.) by RAPD assay. J JPN Soc Hortic Sci 63(3):543–551
Sun L, Zhang Q, Xu Z, Yang W, Guo Y, Lu J et al (2013) Genome-wide DNA polymorphisms in two cultivars of mei (Prunus mume sieb. et zucc.). BMC Genet 14(1):98
Sun LD, Wang YQ, Yan XL, Cheng TR, Ma KF, Yang WR et al (2014) Genetic control of juvenile growth and botanical architecture in an ornamental woody plant, Prunus mume Sieb. et Zucc. as revealed by a high-density linkage map. BMC Genet 15(1):S1
Tao R, Habu T, Yamane H, Sugiura A, Iwamoto K (2000) Molecular markers for self-compatibility in Japanese apricot (Prunus mume). HortScience 35(6):1121–1123
Ushijima K, Yamane H, Watari A, Kakehi E, Ikeda K, Hauck NR et al (2004) The S haplotype-specific F-box protein gene, SFB, is defective in self-compatible haplotypes of Prunus avium and P-mume. Plant J 39(4):573–586
Vos P, Hogers R, Bleeker M, Reijans M, Lee TVD, Hornes M et al (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23(21):4407–4414
Vrebalov J, Ruezinsky D, Padmanabhan V, White R, Medrano D, Drake R et al (2002) A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (Rin) locus. Science 296(5566):343–346
Wang PP, Gao ZH, Ni ZJ, Zhuang WB, Zhang Z (2013) Isolation and identification of new pollen-specific SFB genes in Japanese apricot (Prunus mume). Genet Mol Res 12(3):3286–3295
Wang PP, Shi T, Zhuang WB, Zhang Z, Gao ZH (2012) Determination of S-RNasegenotypes and isolation of four novel S-RNasegenes in Japanese apricot (Prunus mume Sieb. et Zucc.) native to China. J Hort Sci Biotechnol 87(3):266–270
Weber JL, May PE (1989) Abundant class of human dna polymorphisms which can be typed using the polymerase chain-reaction. Am J Hum Genet 44(3):388–396
Wen LH, Zhong WJ, Huo XM, Zhuang WB, Ni ZJ, Gao ZH (2016) Expression analysis of ABA- and GA-related genes during four stages of bud dormancy in Japanese apricot (Prunus mume Sieb. et Zucc). J Hort Sci Biotechnol 91(4):362–369
Xu JX, Gao ZH, Zhang Z (2010) Identification of S-genotypes and novel S-RNase alleles in Japanese apricot cultivars native to China. Sci Hort 123(4):459–463
Yaegaki H, Shimada T, Moriguchi T, Haji T, Yamaguchi M, Hayama H (2001) Molecular characterization of S-RNase genes and S-genotypes in the Japanese apricot Prunus mume Sieb. et Zucc.). Sexual Plant Reprod 13(5):251–257
Yamane H (2014) Regulation of bud dormancy and bud break in Japanese apricot (Prunus mume Siebold. et Zucc.) and Peach [Prunus persica (L.) Batsch]: a summary of recent studies. J Jpn Soc Hort Sci 83(3):187–202
Yamane H, Fukuta K, Matsumoto D, Hanada T, Mei G, Esumi T et al (2009) Characterization of a novel self-compatible S3′ haplotype leads to the development of a Universal PCR marker for two distinctly originated self-compatible S haplotypes in Japanese Apricot (Prunus mume Sieb. et Zucc.). J Jpn Soc Hort Sci 78(1):40–48
Yamane H, Kashiwa Y, Ooka T, Tao R, Yonemori K (2008) Suppression subtractive hybridization and differential screening reveals endodormancy-associated expression of an SVP/AGL24-type MADS-box gene in lateral vegetative buds of japanese apricot. J Amer Soc Hort Sci 133(5):708–716
Yamane H, Ushijima K, Sassa H, Tao R (2003) The use of the S haplotype-specific F-box protein gene, SFB, as a molecular marker for S-haplotypes and self-compatibility in Japanese apricot (Prunus mume). Theor Appl Genet 107(8):1357–1361
Yang CD, Zhang JW, Yan XL, Bao MZ (2008) Genetic relatedness and genetic diversity of ornamental mei (Prunus mume Sieb. et Zucc.) as analysed by AFLP markers. Tree Genet Genomes 4(2):255–262
Zhang J, Zhang Q, Cheng T, Yang W, Pan H, Zhong J et al (2015) High-density genetic map construction and identification of a locus controlling weeping trait in an ornamental woody plant (Prunus mume Sieb. et Zucc). DNA Res 22(3):183–191. https://doi.org/10.1093/dnares/dsv003
Zhang J, Zhang Q, Yang W (2012a) Cloning and expression of CBF transcription factor from Prunus mume. Acta Bot Bor-Occ Sin 32(8):1505–1510
Zhang J, Zhao K, Hou D, Cai J, Zhang Q, Cheng T et al (2017) Genome-wide discovery of DNA polymorphisms in Mei (Prunus mume Sieb. et Zucc.), an ornamental woody plant, with contrasting tree architecture and their functional relevance for weeping trait. Plant Mol Biol Rep 35(1):37–46
Zhang Q, Chen W, Sun L, Zhao F, Huang B, Yang W et al (2012b) The genome of Prunus mume. Nat Commun 3(1):1318
Zhao K, Zhou Y, Ahmad S, Xu Z, Li Y, Yang W et al (2018) Comprehensive cloning of Prunus mume dormancy associated MADS-Box genes and their response in flower bud development and dormancy. Front Plant Sci 9:457
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Gao, Z., Ni, X. (2019). Molecular Mapping and Gene Cloning of QTLs in Prunus mume. In: Gao, Z. (eds) The Prunus mume Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-10797-0_6
Download citation
DOI: https://doi.org/10.1007/978-3-030-10797-0_6
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-10796-3
Online ISBN: 978-3-030-10797-0
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)