Abstract
In the soil ecosystem, plant-associated rhizosphere represents the most dynamic ecosystem providing a close association between plant root and rhizosphere-associated microbial communities. Among the microbiotas colonizing the rhizosphere, rhizospheric fungi hold prominent position but are less explored than that of rhizospheric bacteria. The majority of rhizospheric microbiota, especially rhizospheric fungi, constitutes a complex interface that utilizes the nutrients released by host plant and sets up a platform for the complex interaction between plant, soil, and inhabiting rhizospheric fungi for ecosystem functioning and environmental sustainability. Rhizospheric fungi exhibit a wide range of applications in the field of biomedicine, pharmaceuticals, industries (particularly textile and food processing industries), and agriculture for maintaining a stability of the ecosystem functioning and environmental sustainability. The advent of high-throughput molecular tools and next-generation strategies in genomics and proteomics such as metagenomics, metaproteomics, metatranscriptomics, and metabarcoding has revolutionized the complete understanding of the widespread potential of rhizospheric fungi. In addition, these advanced tools also provide an insight into the structure, function, and composition of rhizospheric fungi, their untapped ecosystem services to the welfare of human beings and environment, and widespread and untapped biological activities. The intervention of next-generation sequencing methods and chip-based technologies also seeks considerable attention from the scientific community for target-oriented exploration of rhizosphere-associated fungal community for the service of human healthcare system, industrial applications, ecosystem functioning, and environmental sustainability.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Abdelfattah A, Malacrino A, Wisniewski M, Cacciola SO (2018) Metabarcoding: A powerful tool to investigate microbial communities and shape future plant protection strategies. Biol Control 120:1–10
Abhilash PC, Powell JR, Singh HB, Singh BK (2012) Plant–microbe interactions: novel applications for exploitation in multipurpose remediation technologies. Trend Biotechnol 30(8):416–420
Almario J, Jeena G, Wunder J, Langen G, Zuccaro A, Coupland G, Bucher M (2017) Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition. Proc Nat Acad Sci 114:E9403–E9412
An YN, Zhang X, Zhang TY, Zhang MY, Zhang Q, Deng XY, Zhao F, Zhu LJ, Wang G, Zhang J, Zhang YX, Liu B, Yao XS (2016) Penicimenolides A-F, Resorcylic Acid Lactones from Penicillium sp., isolated from the Rhizosphere Soil of Panax notoginseng. Sci Rep 6:27396
Anderson IC, Cairney JWG (2004) Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques. Environ Microbiol 6(8):769–779
Andreote FD, Gumiere T, Durrer A (2014) Exploring interactions of plant microbiomes. Sci Agric 71(6):528–539
Araim G, Saleem A, Arnason JT, Charest C (2009) Root Colonization by an Arbuscular Mycorrhizal (AM) Fungus Increases Growth and Secondary Metabolism of Purple Coneflower, Echinacea purpurea (L.) Moench. J Agri Food Chem 57:2255–2258
Badri DV, Weir TL, van der Lelie D, Vivanco JM (2009) Rhizosphere chemical dialogues: plant–microbe interactions. Curr Opin Biotechnol 20:642–650
Baeshen MN (2017) Metagenomics of microbial communities associated with the rhizosphere of the Saudi desert medicinal plants. EC Microbiol ECO 01:31–33
Bakker MG, Schlatter DC, Otto-Hanson L, Kinkel LL (2014) Diffuse symbioses: roles of plant–plant, plant–microbe and microbe–microbe interactions in structuring the soil microbiome. Mol Ecol 23:1571–1583
Balogh-Brunstad Z, Keller CK, Shi Z, Wallander H, Stipp SLS (2017) Ectomycorrhizal Fungi and Mineral Interactions in the Rhizosphere of Scots and Red Pine Seedlings. Soil 1:5
Bandyopadhyay P, Bhuyan SK, Yadava PK, Varma A, Tuteja N (2017) Emergence of plant and rhizospheric microbiota as stable interactomes. Protoplasma 254:617–626
Becklin KM, Hertweek KL, Jumpponen A (2012) Host Identity Impacts Rhizosphere Fungal Communities Associated with Three Alpine Plant Species. Microbiol Ecol 63:682–693
Behie SW, Bidochka MJ (2014) Nutrient transfer in plant–fungal symbioses. Trend Plant Sci 19(11):734–740
Berendsen RL, Pieterse CMJ, Bakker PAHM (2012) The rhizosphere microbiome and plant health. Trend Plant Sci 17(8):478–486
Berg G, Rybakova D, Grube M, Koberl M (2016) The plant microbiome explored: implications for experimental botany. J Exp Bot 67(4):995–1002
Berg G, Smalla K (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 68:1–13
Berg G, Zachow C, Lottmann J, Gotz M, Costa R, Smalla K (2005) Impact of Plant Species and Site on Rhizosphere-Associated Fungi Antagonistic to Verticillium dahliae Kleb. Appl Environ Microbiol 71(8):4203–4213
Birge HE, Bevans RA, Allen CR, Angeler DG, Baer SG, Wall DH (2016) Adaptive management for soil ecosystem services. J Environ Manag 183:371–378
Biswas S, Kundu D, Mazumdar S, Saha A, Majumdar B, Ghorai A, Ghosh D, Yadav A, Saxena A (2018) Study on the activity and diversity of bacteria in a New Gangetic alluvial soil (Eurocrypt) under rice-wheat-jute cropping system. J Environ Biol 39:379–386
Buee M, De Boer W, Martin F, van Overbeek L, Jurkevitch E (2009) The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors. Plant Soil 321:189–212
Cabral L, Soares CRFS, Giachini AJ, Siqueira JO (2015) Arbuscular mycorrhizal fungi in phytoremediation of contaminated areas by trace elements: mechanisms and major benefits of their applications. World J Microbiol Biotechnol 31:1655–1664
Ceccarelli N, Curadi M, Martelloni L, Sbrana C, Picciarelli P, Giovannetti M (2010) Mycorrhizal colonization impacts on phenolic content and antioxidant properties of artichoke leaves and flower heads two years after field transplant. Plant Soil 335:311–323
Choudhury V, Jain PC (2012) Isolation and identification of alkaline protease producing fungi from soils of different habitats of Sagar and Jabalpur District (M.P). J Acad Ind Res 1(3):106–112
Cozzolino V, Di Meo V, Piccolo A (2013) Impact of arbuscular mycorrhizal fungi applications on maize production and soil phosphorus availability. J Geochem Explor 129:40–44
Cui J, Bai L, Liu X, Jie W, Cai B (2018) Arbuscular mycorrhizal fungal communities in the rhizosphere of a continuous cropping soybean system at the seedling stage. Brazilian J Microbiol 49:240–247
Das SK, Liang J, Schmidt M, Laffir F, Marsili E (2012) Biomineralization Mechanism of Gold by Zygomycete Fungi Rhizopus oryzae. ACS Nano 6(7):6165–6173
de Felicio R, Pavao GB, de Oliveira AL, Erbert C Conti R, Pupo MT, Furtado NAJC, Ferreira EG, Costa-Lotufo LV, Young MCM, Yokoya NS, Debonsi HM (2015) Antibacterial, antifungal and cytotoxic activities exhibited by endophytic fungi from the Brazilian marine red alga Bostrychia tenella (Ceramiales). Rev Bras 25:641–650
de Souza-Motta CM, de Queiroz Cavalcanti MA, dos Santos Fernandes MJ, Lima DMM, Nascimento JP, Laranjeira D (2003) Identification and characterization of filamentous fungi isolated from the sunflower (Helianthus annus L.) rhizosphere according to their capacity to hydrolyse inulin. Braz J Microbiol 34(3):273–280
Dessaux Y, Grandclement C, Faure D (2016) Engineering the rhizosphere. Trend Plant Sci 21(3):266–278
Elias F, Woyessa D, Muleta D (2016) Phosphate Solubilization Potential of Rhizosphere Fungi Isolated from Plants in Jimma Zone, Southwest Ethiopia. Int J Microbiol 2016:Article ID 5472601
Fatima F, Bajpai P, Pathak N, Singh S, Priya S, Verma SR (2015) Antimicrobial and immunomodulatory efficacy of extracellularly synthesized silver and gold nanoparticles by a novel phosphate solubilizing fungus Bipolaris tetramera. BMC Microbiol 15:52
Finkel OM, Castrillo G, Paredes SH, Gonzalez IS, Dangl JL (2017) Understanding and exploiting plant beneficial microbes. Curr Opin Plant Biol 38:155–163
Finzi AC, Abramoff RZ, Spiller KS, Brozostek ER, Darby BA, Kramer MA, Phillips RP (2015) Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles. Glob Chang Biol 21:2082–2094
Franken P (2012) The plant strengthening root endophyte Piriformospora indica: potential application and the biology behind. Appl Microbiol Biotechnol 96:1455–1464
Gao H, Zhu T, Li D, Gu Q, Liu W (2013) Prenylated indole diketopiperazine alkaloids from a mangrove rhizosphere soil derived fungus Aspergillus effuses H1-1. Arch Pharmaceut Res 36:952–956
Greenfield M, Gomez-Jimenez MI, Ortiz V, Vega FE, Kramer M, Parsa S (2016) Beauveria bassiana and Metarhizium anisopliae endophytically colonize cassava roots following soil drench inoculation. Biol Control 95:40–48
Grigoriev IV, Cullen D, Goodwin SB, Hibbett D, Jeffries TW, Kubicek CP, Kuske C, Magnuson JK, Martin F, Spatafora JW, Tsang A, Baker SE (2011) Fueling the future with fungal genomics. Mycol 2(3):192–209
Gunatilaka AAL (2006) Natural Products from Plant-associated Microorganisms: Distribution, Structural Diversity, Bioactivity, and Implications of Their Occurrence. J Nat Prod 69(3):509–526
Haldar S, Sengupta S (2015) Plant-microbe Cross-talk in the Rhizosphere: Insight and Biotechnological Potential. Open Microbiol J 9:1–7
Hohmann P, Jones EE, Hill RA, Stewart A (2011) Understanding Trichoderma in the root system of Pinus radiata: associations between rhizosphere colonisation and growth promotion for commercially grown seedlings. Fungal Biol 115:759–767
Jambon I, Thijs S, Weyens N, Vangronsveld J (2018) Harnessing plant-bacteria-fungi interactions to improve plant growth and degradation of organic pollutants. J Plant Interact 13(1):119–130
Jeffries P, Gianinazzi S, Perotto S, Turnau K, Barea JM (2003) The contribution of arbuscular mycorrhizal fungi in sustainable maintenance of plant health and soil fertility. Biol Fert Soil 37:1–16
Jiang Y, Li S, Li R, Zhang J, Liu Y, Lv L, Zhu H, Wu W, Li W (2017) Plant cultivars imprint the rhizosphere bacterial community composition and association networks. Soil Biol Biochem 109:147–155
Jogaiah S, Abdelrahman M, Tran LSP, Shin-ichi I (2013) Characterization of rhizosphere fungi that mediate resistance in tomato against bacterial wilt disease. J Exp Bot 64(12):3829–3842
Johnson MP, Stephan R (2016) Association of Arbuscular Mycorrhizal Fungi and other Rhizosphere Microbes with Different Medicinal Plants in the Calcareous Soil of Ariyalur District, India. Int J Curr Microbiol Appl Sci 5(9):659–666
Kangwankraiphaisan T, Suntornvongsagul K, Sihanonth P, Klysubun W, Gadd GM (2013) Influence of arbuscular mycorrhizal fungi (AMF) on zinc biogeochemistry in the rhizosphere of Lindenbergia philippensis growing in zinc-contaminated sediment. Biometal 26:489–505
Kawasaki A, Donn S, Ryan PR, Mathesius U, Devilla R, Jones A, Watt M (2016) Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat. PLoS One 11(10):e0164533
Khalid M, Hassani D, Bilal M, Asad F, Huang D (2017) Influence of bio-fertilizer containing beneficial fungi and rhizospheric bacteria on health promoting compounds and antioxidant activity of Spinacia oleracea L. Bot Stud 58:35
Khan MS, Zaidi A, Ahemad M, Oves M, Wani PA (2010) Plant growth promotion by phosphate solubilizing fungi – current perspective. Arch Agro Soil Sci 56(1):73–98
Kothari R, Singh RP, Kothari V (2016) Application of Next Generation Sequencing Technologies in Revealing Plant-Microbe Interactions. J Next Gen Seq Appl 3:e108
Kuzyakov Y, Blagodatskaya E (2015) Microbial hotspots and hot moments in soil: Concept and review. Soil Biol Biochem 83:184–199
Lakshmanan V, Selvaraj G, Bais HP (2014) Functional soil microbiome: belowground solutions to an aboveground problem. Plant Physiol 166(2):689–700
Li X, Rui J, Xiong J, Li J, He Z, Zhou J, Yannarell AC, Mackie RI (2014) Functional Potential of Soil Microbial Communities in the Maize Rhizosphere. PLoS One 9(11):e112609
Manzanilla-Lopez RH, Esteves I, Finetti-Sialer MM, Hirsch PR, Ward E, Devonshire J, Hidalgo-Diaz L (2013) Pochonia chlamydosporia: Advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes. J Nematol 45(1):1–7
Mathur N, Vyas P, Joshi N, Choudhary K, Purohit DK (1999) Mycorrhiza: A Potent Bioinoculant for Sustainable Agriculture. In: Pathak H, Sharma A (eds) Microbial Technology: The Emerging Era. Lambert Academic Publisher, Germany, pp 230–245
McKinnon AC, Glare TR, Ridgway HJ, Mendoza-Mendoza A, Holyoake A, Godsoe WK, Bufford JL (2018) Detection of the Entomopathogenic Fungus Beauveria bassiana in the Rhizosphere of Wound-Stressed Zea mays Plants. Front Microbiol 9:1161
McNera DH Jr (2013) The Rhizosphere - Roots, Soil and Everything In Between. Nature Educat Knowl 4(3):1
Mendes LW, Kuramae EE, Navarrete AA, van Veen JA, Tsai SM (2014) Taxonomical and functional microbial community selection in soybean rhizosphere. ISME J 8:1577–1587
Mendes R, Garbeva P, Raaijmakers JM (2013) The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiol Rev 37:634–663
Meng LH, Li XM, Lv CT, Li CS, Xu GM, Huang CG, Wang BG (2013) Sulfur-Containing Cytotoxic Curvularin Macrolides from Penicillium sumatrense MA-92, a Fungus Obtained from the Rhizosphere of the Mangrove Lumnitzera racemosa. J Nat Prod 76:2145–2149
Miao CP, Mi QL, Qiao XG, Zheng YK, Chen YW, Xu LH, Guan LH, Zhao LX (2016) Rhizospheric fungi of Panax notoginseng: diversity and antagonism to host phytopathogens. J Ginseng Res 40:127–134
Mommer L, Hinsinger P, Prigent-Combaret C, Visser EJW (2016) Advances in the rhizosphere: stretching the interface of life. Plant Soil 407:1–8
Mwajita MR, Murage H, Tani A, Kahangi EM (2013) Evaluation of rhizosphere, rhizoplane and phyllosphere bacteria and fungi isolated from rice in Kenya for plant growth promoters. Springer Plus 2:606
Nakayan P, Hameed A, Singh S, Young LS, Hung MH, Young CC (2013) Phosphate-solubilizing soil yeast Meyerozyma guilliermondii CC1 improves maize (Zea mays L.) productivity and minimizes requisite chemical fertilization. Plant Soil 373:301–315
Nasim FH, Naureen A, Saleem M, Riaz N, Choudhary MS, Ashraf M (2018) PAAN135, a novel rhizospheric fungus associated with Cholistan desert grass Panicum antidotale, is a species of Saccharomycetales and a new source of cyclo-L-prolylglycine diketopiperazine. Symbiosis 74:121–130
Pandya ND, Desai PV, Jadhav HP, Sayyed RZ (2018) Plant growth promoting potential of Aspergillus sp. NPF7, isolated from wheat rhizosphere in South Gujarat, India. Environ Sustain. https://doi.org/10.1007/s42398-018-0025-z
Panjiar N, Mishra S, Yadav AN, Verma P (2017) Functional Foods from Cyanobacteria: An Emerging Source for Functional Food Products of Pharmaceutical Importance. In: Gupta VK, Treichel H, Shapaval VO, LAd O, Tuohy MG (eds) Microbial Functional Foods and Nutraceuticals. John Wiley & Sons, Hoboken, pp 21–37. https://doi.org/10.1002/9781119048961.ch2
Paranagama PA, Wijeratne EMK, Gunatilaka AAL (2007) Uncovering Biosynthetic Potential of Plant-Associated Fungi: Effect of Culture Conditions on Metabolite Production by Paraphaeosphaeria quadriseptata and Chaetomium chivversii. J Nat Prod 70:1939–1945
Patel K, Gadewar M, Tripathi R, Prasad SK, Patel DK (2012) A review on medicinal importance, pharmacological activity and bioanalytical aspects of beta-carboline alkaloid “Harmine”. Asian Pac J Trop Biomed 2(8):660–664
Philippot L, Raiijmakers JM, Lemanceau P, Puttem WH (2013) Going back to the roots: the microbial ecology of the rhizosphere. Nature Rev Microbiol 11:789–799
Pivato B, Bru D, Busset H, Deau F, Matejicek A, Philippot L, Moreau D (2017) Positive effects of plant association on rhizosphere microbial communities depend on plant species involved and soil nitrogen level. Soil Biol Biochem 114:1–4
Poole P (2017) Shining a light on the dark world of plant root–microbe interactions. Proc Nat Acad Sci 114(17):4281–4283
Purahong W, Durka W, Fisher M, Dommert S, Schops R, Buscot F, Wubet T (2016) Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest. Sci Rep 6:36672
Qiao Q, Wang F, Zhang J, Chen Y, Zhang C, Liu G, Zhang H, Ma C, Zhang J (2017) The Variation in the Rhizosphere Microbiome of Cotton with Soil Type, Genotype and Developmental Stage. Sci Rep 7:3940
Qureshi SA, Ruqqia SV, Ara J, Ehteshamul-Haque S (2012) Nematicidal potential of culture filtrates of soil fungi associated with rhizosphere and rhizoplane of cultivated and wild plants. Pakistan J Bot 44(3):1041–1046
Radhakrishnan R, Shim KB, Lee BW, Hwang CD, Pae SB, Park CH, Kim SU, Lee CK, Baek IY (2013) IAA-Producing Penicillium sp. NICS01 Triggers Plant Growth and Suppresses Fusarium sp.-Induced Oxidative Stress in Sesame (Sesamum indicum L.). J Microbiol Biotechnol 23(6):856–863
Rajkumar HG, Seema HS, Sunil Kumar CP (2012) Diversity of arbuscular mycorrhizal fungi associated with some medicinal plants in Western Ghats of Karnataka region. India World J Sci Technol 2(1):13–20
Rani N, Jain P, Geetanjali (2017) Isolation of antimicrobial compound producing fungi from the rhizospheric soil of the medicinal plant Azadirachta indica. J Chem Pharm Res 9(9):265–270
Rossmann M, Sarango-Flores SW, Chiaramonte JB, Kmit MCP, Mendes R (2017) Plant Microbiome: Composition and functions in plant compartments. In: Pylro V, Roesch L (eds) The Brazilian Microbiome, pp 7–20
Saleem M, Law AD, Sahib MR, Pervaiz ZH, Zhang Q (2018) Impact of root system architecture on rhizosphere and root microbiome. Rhizosphere 6:47–51
Saranraj P, Stella D (2013) Fungal amaylase – A review. Int J Microbiol Res 4(2):203–211
Senthivelan T, Kanagaraj J, Panda RC (2016) Recent Trends in Fungal Laccase for Various Industrial Applications: An Eco-friendly Approach - A Review. Biotechnol Bioprocess Eng 21:19–38
Shaikh MN, Mokat DN (2017) Bioactive metabolites of rhizosphere fungi associated with Cymbopogon citratus (DC.) Stapf. J Pharma Phytochem 6(6):2289–2293
Shaikh MN, Mokat DN (2018) Role of Rhizosphere Fungi Associated With Commercially Explored Medicinal and Aromatic Plants: A Review. Curr Agr Res J 6(1):72–77
Shi S, Nuccio EE, Shi ZJ, He Z, Zhou J, Firestone MK (2016) The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages. Ecol Lett 19:926–936
Shivanna MB, Vasanthakumari MM (2011) Temporal and spatial variability of rhizosphere and rhizoplane fungal communities in grasses of the subfamily Chloridoideae in the Lakkavalli region of the Western Ghats in India. Mycosphere 2(3):255–271
Song X, Pan Y, Li L, Wu X, Wang Y (2018) Composition and diversity of rhizosphere fungal community in Coptis chinensis Franch. continuous cropping fields. PLoS One 13(3):e0193811
Suman A, Yadav AN, Verma P (2016) Endophytic Microbes in Crops: Diversity and Beneficial impact for Sustainable Agriculture. In: Singh D, Abhilash P, Prabha R (eds) Microbial Inoculants in Sustainable Agricultural Productivity, Research Perspectives. Springer-Verlag, New Delhi, pp 117–143. https://doi.org/10.1007/978-81-322-2647-5_7
Tam HT, Chau DTM, Diep CN (2016) Isolation and identification phosphate-solubilizing fungi from ferralsols of tithonia (Tithonia diversifolia (HAMSL.) gray) in daknong and daklak province(s), Vietnam. World J Pharm Pharmaceut Sci 5(9):325–342
Thatoi H, Behera BC, Mishra RR (2013) Ecological role and biotechnological potential of mangrove fungi: a review. Mycol 4(1):54–71
Tkacz A, Cheem J, Chandra G, Grant A, Poole PS (2015) Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition. ISME J 9:2349–2359
van Dam N, Bouwmeester HJ (2016) Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication. Trend Plant Sci 21(3):256–265
Varma A, Bakshi M, Lou B, Hartmann A, Oelmueller R (2012) Piriformospora indica: A novel plant growth-promoting mycorrhizal fungus. Agribiol Res 1(2):117–131
Venturi V, Keel C (2016) Signaling in the rhizosphere. Trend Plant Sci 21(3):187–198
Verma P, Yadav AN, Kazy SK, Saxena AK, Suman A (2014) Evaluating the diversity and phylogeny of plant growth promoting bacteria associated with wheat (Triticum aestivum) growing in central zone of India. Int J Curr Microbiol Appl Sci 3:432–447
Verma P, Yadav AN, Khannam KS, Kumar S, Saxena AK, Suman A (2016) Molecular diversity and multifarious plant growth promoting attributes of Bacilli associated with wheat (Triticum aestivum L.) rhizosphere from six diverse agro-ecological zones of India. J Basic Microbiol 56:44–58
Verma P, Yadav AN, Khannam KS, Panjiar N, Kumar S, Saxena AK, Suman A (2015) Assessment of genetic diversity and plant growth promoting attributes of psychrotolerant bacteria allied with wheat (Triticum aestivum) from the northern hills zone of India. Ann Microbiol 65:1885–1899
Verma P, Yadav AN, Khannam KS, Saxena AK, Suman A (2017a) Potassium-Solubilizing Microbes: Diversity, Distribution, and Role in Plant Growth Promotion. In: Panpatte DG, Jhala YK, Vyas RV, Shelat HN (eds) Microorganisms for Green Revolution-Volume 1: Microbes for Sustainable Crop Production. Springer, Singapore, pp 125–149. https://doi.org/10.1007/978-981-10-6241-4_7
Verma P, Yadav AN, Kumar V, Singh DP, Saxena AK (2017b) Beneficial Plant-Microbes Interactions: Biodiversity of Microbes from Diverse Extreme Environments and its Impact for Crops Improvement. In: Singh DP, Singh HB, Prabha R (eds) Plant-Microbe Interactions in Agro-Ecological Perspectives. Springer Nature, Singapore, pp 543–580. https://doi.org/10.1007/978-981-10-6593-4_22
Wang Z, Li T, Wen X, Liu Y, Han J, Liao Y, DeBruyn JM (2017) Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth. Front Microbiol 8:1301
Westover KM, Kennedy AC, Kelleys SE (1997) Patterns of rhizosphere microbial community structure associated with co-occurring plant species. J Ecol 85:863–873
Wu JJ, Qiu C, Ren Y, Yan R, Ye X, Wang G (2018) Novel Salt-Tolerant Xylanase from a Mangrove-Isolated Fungus Phoma sp. MF13 and Its Application in Chinese Steamed Bread. ACS Omega 3:3708–3716
Yadav AN (2009) Studies of Methylotrophic Community from the Phyllosphere and Rhizosphere of Tropical Crop Plants. M.Sc. Thesis, Bundelkhand University, pp. 66, DOI: https://doi.org/10.13140/2.1.5099.0888
Yadav AN (2017) Agriculturally Important Microbiomes: Biodiversity and Multifarious PGP Attributes for Amelioration of Diverse Abiotic Stresses in Crops for Sustainable Agriculture. Biomed J Sci Tech Res 1:1–4
Yadav AN, Kumar R, Kumar S, Kumar V, Sugitha T, Singh B, Chauhan VS, Dhaliwal HS, Saxena AK (2017a) Beneficial microbiomes: Biodiversity and potential biotechnological applications for sustainable agriculture and human health. J Appl Biol Biotechnol 5:1–13
Yadav AN, Kumar V, Prasad R, Saxena AK, Dhaliwal HS (2018a) Microbiome in Crops: Diversity, distribution and potential role in crops improvements. In: Prasad R, Gill SS, Tuteja N (eds) Crop Improvement through Microbial Biotechnology. Elsevier, San Diego, pp 305–332
Yadav AN, Rana KL, Kumar V, Dhaliwal HS (2016a) Phosphorus Solubilizing Endophytic Microbes: Potential Application for Sustainable Agriculture. EU Voice 2:21–22
Yadav AN, Sachan SG, Verma P, Saxena AK (2016b) Bioprospecting of plant growth promoting psychrotrophic Bacilli from cold desert of north western Indian Himalayas. Indian J Exp Biol 54:142–150
Yadav AN, Verma P, Kour D, Rana KL, Kumar V, Singh B, Chauahan VS, Sugitha T, Saxena AK, Dhaliwal HS (2017b) Plant microbiomes and its beneficial multifunctional plant growth promoting attributes. Int J Environ Sci Nat Resour 3:1–8. https://doi.org/10.19080/IJESNR.2017.03.555601
Yadav AN, Verma P, Kumar S, Kumar V, Kumar M, Singh BP, Saxena AK, Dhaliwal HS (2018b) Actinobacteria from Rhizosphere: Molecular Diversity, Distributions and Potential Biotechnological Applications. In: Singh B, Gupta V, Passari A (eds) New and Future Developments in Microbial Biotechnology and Bioengineering. Elsevier, San Diego, pp 13–41. https://doi.org/10.1016/B978-0-444-63994-3.00002-3
Yadav AN, Verma P, Kumar V, Sangwan P, Mishra S, Panjiar N, Gupta VK, Saxena AK (2018c) Biodiversity of the Genus Penicillium in Different Habitats. In: Gupta VK, Rodriguez-Couto S (eds) New and Future Developments in Microbial Biotechnology and Bioengineering, Penicillium System Properties and Applications. Elsevier, Amsterdam, pp 3–18. https://doi.org/10.1016/B978-0-444-63501-3.00001-6
Yadav AN, Verma P, Sachan SG, Kaushik R, Saxena AK (2018d) Psychrotrophic Microbiomes: Molecular Diversity and Beneficial Role in Plant Growth Promotion and Soil Health. In: Panpatte DG, Jhala YK, Shelat HN, Vyas RV (eds) Microorganisms for Green Revolution-Volume 2: Microbes for Sustainable Agro-ecosystem. Springer, Singapore, pp 197–240. https://doi.org/10.1007/978-981-10-7146-1_11
Zhang X, Ferris H, Mitchell J, Liang W (2017) Ecosystem services of the soil food web after long-term application of agricultural management practices. Soil Biol Biochem 111:36–43
Zhong-shan C, Jia-Hui P, Wen-cheng T, Qi-jin C, Yong-cheng L (2009) Biodiversity and biotechnological potential of mangrove-associated fungi. J Forest Res 20(1):63–72
Zhou X, Tian L, Zhang J, Ma L, Li X, Tian C (2017) Rhizospheric fungi and their link with the nitrogen-fixing Frankia harbored in host plant Hippophae rhamnoides L. J Basic Microbiol 57:1055–1064
Acknowledgment
The authors like to acknowledge Pondicherry University, Puducherry, India, for providing e-resources.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Pattnaik, S.S., Busi, S. (2019). Rhizospheric Fungi: Diversity and Potential Biotechnological Applications. In: Yadav, A., Mishra, S., Singh, S., Gupta, A. (eds) Recent Advancement in White Biotechnology Through Fungi. Fungal Biology. Springer, Cham. https://doi.org/10.1007/978-3-030-10480-1_2
Download citation
DOI: https://doi.org/10.1007/978-3-030-10480-1_2
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-10479-5
Online ISBN: 978-3-030-10480-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)