Abstract
Recent experience with Bacillus spore characterization has demonstrated that carbohydrate content can provide potentially useful bioforensics information. Like other metabolites, the carbohydrate profiles of a sample can reflect variations in cellular structures as well as presence of residual carbohydrates from the medium. The presence and characteristics of residual carbohydrates, such as agar, represent strong indicators of culturing method. The culturing method is but one part of the biological production process. Methods to detect residual carbohydrates can be extended to other carbohydrates commonly used in processing and preservation of microbes and their components in a dry form.
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References
Budowle B, Wilson MR (2003) Addressing bioterrorism and biocrimes through microbial forensics. Forensic Sci Int 136:392
Budowle B, Schutzer SE, Einseln A et al (2003) Building microbial forensics as a response to bioterrorism. Science 301:1852–3
Budowle B (2004) Genetics and attribution issues that confront the microbial forensics field. Forensic Sci Int 146:S185–S8
Budowle B, Johnson MD, Fraser CM, Leighton TJ, Murch RS, Chakraborty R (2005) Genetic analysis and attribution of microbial forensics evidence. Crit Rev Microbiol 31:233–54
Ecker DJ, Sampath RA, Willett P et al (2005) The Microbial Rosetta Stone database: a common structure for microbial biosecurity threat agents. J Forensic Sci 50:1380–5
Budowle B, Schutzer SE, Ascher MS et al (2005) Toward a system of microbial forensics: from sample collection to interpretation of evidence. Appl Environ Microbiol 71:2209–13
Morse SA, Budowle B (2006) Microbial forensics: application to bioterrorism preparedness and response. Infect Dis Clin North Am 20:455–73
Murch RS (2003) Microbial forensics: building a national capacity to investigate bioterrorism. Biosecur Bioterror 1:117–22
Murch RS (2005) Biothreat agent forensics: seeking attribution using an adaptive, integrated approach. Abs Pap Am Chem Soc 229:U1182–U3
Beecher DJ (2006) Forensic application of microbiological culture analysis to identify mail intentionally contaminated with Bacillus anthracis spores. Appl Environ Microbiol 72:5304–10
Fox A, Black GE, Fox K, Rostovtseva S (1993) Determination of carbohydrate profiles of Bacillus anthracis and Bacillus cereus including identification of O-methyl methyl pentoses by using gas-chromatography mass spectrometry. J Clin Microbiol 31:887–94
Fox A, Rogers JC, Fox KF, Schnitzer G, Morgan SL, Brown A, Aono R (1990) Chemotaxonomic differentiation of Legionellae by detection and characterization of aminodideoxyhexoses and other unique sugars using gas chromatography mass spectrometry. J Clin Microbiol 28:546–52
Fox A, Gilbart J, Morgan SL (1990) Profiling and detection of bacterial carbohydrates. In: Fox A et al (ed) Analytical microbiology methods: chromatography and mass spectrometry; first international symposium on the interface between analytical chemistry and microbiology: applications of chromatography and mass spectrometry, Columbia, South Carolina, USA, 3–7 June 1987, New York, 280 p. Plenum, New York, pp 71–88
Fox A, Black GE (1994) Identification and detection of carbohydrate markers for bacteria – derivatization and gas chromatography mass spectrometry. In: Mass Spectrometry for the Characterization of Microorganisms. Chap. 8 American Chemical Society, 107–31
Kim JS, Laskowich ER, Arumugham RG, Kaiser RE, MacMichael GJ (2005) Determination of saccharide content in pneumococcal polysaccharides and conjugate vaccines by GG-MSD. Anal Biochem 347:262–74
Adams MA, Chen ZL, Landman P, Colmer TD (1999) Simultaneous determination by capillary gas chromatography of organic acids, sugars, and sugar alcohols in plant tissue extracts as their trimethylsilyl derivatives. Anal Biochem 266:77–84
Honda S (1996) Separation of neutral carbohydrates by capillary electrophoresis. J Chromatogr A 720:337–51
Honda S, Okeda J, Iwanaga H et al (2000) Ultramicroanalysis of reducing carbohydrates by capillary electrophoresis with laser-induced fluorescence detection as 7-nitro-2,1,3-benzoxadiazole-tagged N-methylglycamine derivatives. Anal Biochem 286: 99–111
Guignard C, Jouve L, Bogeat-Triboulot MB, Dreyer E, Hausman JF, Hoffmann L (2005) Analysis of carbohydrates in plants chromatography coupled with by high-performance anion-exchange electrospray mass spectrometry. J Chromatogr A 1085:137–42
Bruggink C, Maurer R, Herrmann H, Cavalli S, Hoefler F (2005) Analysis of carbohydrates by anion exchange chromatography and mass spectrometry. J Chromatogr A 1085:104–9
Conboy JJ, Henion J (1992) High performance anion exchange chromatography coupled with mass spectrometry for the determination of carbohydrates. Biol Mass Spectrom 21:397–407
Kohler M, Leary JA (1995) LC/MS/MS of carbohydrates with postcolumn addition of metal chlorides using a triaxial electrospray probe. Anal Chem 67: 3501–8
Wunschel DS, Fox KF, Fox A et al (1997) Quantitative analysis of neutral and acidic sugars in whole bacterial cell hydrolysates using high-performance anion-exchange liquid chromatography electrospray ionization tandem mass spectrometry. J Chromatogr A 776:205–19
Shahgholi M, Ohorodnik S, Callahan JH, Fox A (1997) Trace detection of underivatized muramic acid in environmental dust samples by microcolumn liquid chromatography electrospray tandem mass spectrometry. Anal Chem 69:1956–60
Itoh S, Kawasaki N, Ohta M, Hayakawa T (2002) Structural analysis of a glycoprotein by liquid chromatography-mass spectrometry and liquid chromatography with tandem mass spectrometry – application to recombinant human thrombomodulin. J Chromatogr A 978:141–52
Rogatsky E, Stein D (2005) Novel, highly robust method of carbohydrate pre-purification by two-dimensional liquid chromatography prior to liquid chromatography/mass spectrometry or gas chromatography/mass spectrometry. J Chromatogr A 1073:11–6
Kim K, Hadfield T, Fox K, Fox A (1996) Differentiation of Brucella species using PCR and gas chromatography-mass spectrometry. Abs Gen Meet Am Soc Micro 96:472
Wunschel D, Fox KF, Black GE, Fox A (1994) Discrimination among the B. cereus group, in comparison to B. subtilis, by structural carbohydrate profiles and ribosomal RNA spacer region PCR. Syst Appl Microbiol 17:625–35
Wright J, Heckels JE (1975) Teichuronic acid of cell-walls of Bacillus subtilis W23 grown in a chemostat under phosphate limitation. Biochem J 147:187–9
Lang WK, Glassey K, Archibald AR (1982) Influence of phosphate supply on teichoic acid and teichuronic acid content of Bacillus subtilis cell walls. J Bacteriol 151:367–75
Robson RL, Baddiley J (1977) Role of teichuronic acid in Bacillus licheniformis-defective autolysis due to deficiency of teichuronic acid in a novobiocin-resistant mutant. J Bacteriol 129:1051–8
Ellwood DC, Tempest DW (1969) Control of teichoic acid and teichuronic acid biosyntheses in chemostat cultures of Bacillus subtilis var niger. Biochem J 111:1
Fox KF, Wunschel DS, Fox A, Stewart GC (1998) Complementarity of GC-MS and LC-MS analyses for determination of carbohydrate profiles of vegetative cells and spores of Bacilli. J Microbiol Methods 33:1–11
Sylvestre P, Couture-Tosi E, Mock M (2002) A Âcollagen-like surface glycoprotein is a structural component of the Bacillus anthracis exosporium. Mol Microbiol 45:169–78
Daubenspeck JM, Zeng HD, Chen P et al (2004) Novel oligosaccharide side chains of the collagen-like region of BclA, the major glycoprotein of the Bacillus anthracis exosporium. J Biol Chem 279:30945–53
Waller LN, Stump MJ, Fox KF et al (2005) Identification of a second collagen-like glycoprotein produced by Bacillus anthracis and demonstration of associated spore-specific sugars. J Bacteriol 187: 4592–7
Thompson BM, Waller LN, Fox KF, Fox A, Stewart GC (2007) The BclB glycoprotein of Bacillus anthracis is involved in exosporium integrity. J Bacteriol 189:6704–13
Hess W (1992) Walther and Angelina Hesse-Early contributors to bacteriology. ASM News 58:425
Chaoyuan W (ed) (1990) Properties, manufacture and application of seaweed polysaccharides – agar, carrageenan and algin, China. In: Training Manual on Gracilaria Culture and Seaweed Processing in China. Chap. 3. Food and agriculture organization of the United Nations.
Jol CN, Neiss TG, Penninkhof B, Rudolph B, De Ruiter GA (1999) A novel high-performance anion-exchange chromatographic method for the analysis of carrageenans and agars containing 3,6-anhydrogalactose. Anal Biochem 268:213–22
Melo MRS, Feitosa JPA, Freitas ALP, de Paula RCM (2002) Isolation and characterization of soluble sulfated polysaccharide from the red seaweed Gracilaria cornea. Carbohydr Polymers 49:491–8
Takano R, Hayashi K, Hara S (1995) Highly methylated agars with a high gel-melting point from the red seaweed, Gracilaria eucheumoides. Phytochemistry 40:487–90
Marinho-Soriano E, Bourret E (2003) Effects of season on the yield and quality of agar from Gracilaria species (Gracilariaceae, Rhodophyta). Bioresour Technol 90:329–33
Yaphe W (1960) Colorimetric determination of 3,6-anhydrogalactose and galatose in marine algal polysaccharides. Anal Chem 32:1327–30
Yaphe W, Arsenault GP (1965) Improved resorcinol reagent for determination of fructose and of 3,6-anhydrogalactose in polysaccharides. Anal Biochem 13: 143–48
Lahaye M, Yaphe W, Rochas C (1985) C-13-NMR-spectral analysis of sulfated and desulfated polysaccharides of the agar type. Carbohydr Res 143:240–5
Kiwitthaschemie K, Heims H, Steinhart H, Mischnick P (1993) The analysis of agarose by the reductive cleavage method. Carbohydr Res 248:267–75
Quemener B, Thibault JF (1990) Assessment of methanolysis for the determination of sugars in pectins. Carbohydr Res 206:277–87
Navarro DA, Stortz CA (2003) Determination of the configuration of 3,6-anhydrogalactose and cyclizable alpha-galactose 6-sulfate units in red seaweed galactans. Carbohydr Res 338:2111–8
Stevenson TT, Furneaux RH (1991) Chemical methods for the analysis of sulfated galactans from red algae. Carbohydr Res 210:277–98
Fenselau C (2005) In: 17th Sanibel conference on mass spectrometry: forensic science and counterÂterrorism, Sanibel conference.
Wunschel DS, Colburn HA, Fox A, Fox K, Harley W, Wahl J, Wahl K (2008) Detection of agar, by analysis of sugar markers, associated with Bacillus anthracis spores, after culture. J Microbiol Methods 74: 57–63
Fox A, Wright L, Fox K (1995) Gas chromatography-tandem mass spectrometry for trace detection of muramic acid, a peptidoglycan chemical marker, in organic dust. J Microbiol Methods 22:11–26
Yang L, Ma Y, Zhang YX (2007) Freeze-drying of live attenuated Vibrio anguillarum mutant for vaccine preparation. Biologicals 35:265–9
Higl B, Kurtmann L, Carlsen CU et al (2007) Impact of water activity, temperature, and physical state on the storage stability of Lactobacillus paracasei ssp paracasei freeze-dried in a lactose matrix. Biotechnol Prog 23:794–800
Kailasapathy K (2002) Microencapsulation of probiotic bacteria: technology and potential applications. Curr Issues Intest Microbiol 3:39–48
Acknowledgments
A portion of this work was supported by the US Department of Homeland Security Science and Technology within the bioforensics program at The Pacific Northwest National Laboratory, which is operated by Battelle for the US Department of Energy, under contract DE-AC05-76RLO1830. The views and conclusions contained in this document are those of the authors and should not be implied as representing the official policies either express or implied by the US government.
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Wunschel, D.S., Fox, A. (2012). Carbohydrate Markers of Organism Purity and Growth Environment. In: Cliff, J., Kreuzer, H., Ehrhardt, C., Wunschel, D. (eds) Chemical and Physical Signatures for Microbial Forensics. Infectious Disease. Springer, New York, NY. https://doi.org/10.1007/978-1-60327-219-3_4
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DOI: https://doi.org/10.1007/978-1-60327-219-3_4
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