The thermodynamic property of a molecule describes its energy state, often envisioned in terms of enthalpy, entropy, and free energy. Such a formulation accounts for energy flow and yields insight into the strength of molecular interaction as well as the direction of a chemical reaction. Despite its macroscopic overview, the energy states of thermodynamics have roots in the probability of quantum states. In a triumph of twentieth-century physics, Boltzmann linked entropy with the probability of quantum states and created a bridge from statistical to classical thermodynamics.
In the kinetic theory of gases, Boltzmann's ideas take form. Molecules diffuse randomly and exhibit velocities that follow a probability distribution and depend upon temperature. But each degree of motion contributes ½kT to the average energy of the system, where k is Boltzmann's constant and T is temperature. Because of the low density of molecules in gas, intermolecular collision doesn't significantly alter the average energy of the system. In liquid, these same laws still regulate molecular motion. However, they cannot overlook the concerns of intermolecular interaction as well as molecular size and shape. Molecules no longer exist in low density. Moreover, large molecules move slower than small molecules, and spherical shape molecules will move faster than a cylindrical one.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Further Study
de Graaf RA. 1998 In-vivo NMR spectroscopy. New York: John Wiley.
Jue T. 1994. Measuring tissue oxygenation with the 1H NMR signals of myoglobin. In NMR in physiology and biomedicine, pp. 196–204. Ed RJ Gillies. New York: Academic Press.
Weiss TF. 1996. Cellular biophysics: transport. Cambridge: MIT Press.
Liang ZP, Lauterbur PC. 2000. Principles of magnetic resonance imaging: a signal processing perspective. Piscataway, NJ: IEEE Press.
References
Lavalette D, Hink MA, Tourbez M, Tetreau C, Visser AJ. 2006. Proteins as micro viscosimeters: Brownian motion revisited. Eur Biophys J 35(6):517–522.
Lavalette D, Tetreau C, Tourbez M, Blouquit Y. 1999. Microscopic viscosity and rotational diffusion of proteins in a macromolecular environment. Biophys J 76(5):2744–2751.
Stejskal EO, Tanner JE. 1965. Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J Chem Phys 42(1):288–292.
Torrey HC. 1956. Bloch equations with diffusion terms. Phys Rev 104:563–565.
Price WS. 1997. Pulsed-field gradient nuclear magnetic resonance as a tool for studying translational diffusion, 1: basic theory. Conc Magn Reson 9(5):299–336.
Garrido L, Wedeen VJ, Kwong KK, Spencer UM, Kantor HL. 1994. Anisotropy of water diffusion in the myocardium of the rat. Circ Res 74(5):789–793.
Moonen CT, van Zijl PC, Le Bihan D, DesPres D. 1990. In vivo NMR diffusion spectroscopy: 31P application to phosphorus metabolites in muscle. Magn Reson Med 13(3):467–477.
Moonen CT, Pekar J, de Vleeschouwer MH, van Gelderen P, van Zijl PC, DesPres D. 1991. Restricted and anisotropic displacement of water in healthy cat brain and in stroke studied by NMR diffusion imaging. Magn Reson Med 19(2):327–332.
Nicolay K, Braun KPJ, de Graaf RA, Dijkhuizen RM, Kruiskamp MJ. 2001. Diffusion NMR spectroscopy. NMR Biomed 14(2):94–111.
van Gelderen P, DesPres D, van Zijl PC, Moonen CT. 1994. Evaluation of restricted diffusion in cylinders: phosphocreatine in rabbit leg muscle. J Magn Reson B 103(3):255–260.
Basser P, Mateillo J, LeBihan D. 1994. Estimation of the effective self-diffusion tensor from the NMR spin echo. J Magn Reson 103:247–254.
Wittenberg BA, Wittenberg JB. 1989. Transport of oxygen in muscle. Annu Rev Physiol 51:857–878.
Guyton GP, Stanek KS, Schneider RC, Hochachka PW, Hurford WE, Zapol DG, Liggins GC, Zapol WM. 1995. Myoglobin saturation in free-diving Weddell seals. J Appl Physiol 79(4):1148–1155.
Ponganis PJ, Kreutzer U, Sailasuta N, Knower T, Hurd R, Jue T. 2002. Detection of myoglobin desaturation in Mirounga angustirostris during apnea. Am J Physiol Regul Integr Comp Physiol 282:R267–R272.
Wittenberg JB, Wittenberg BA. 2003. Myoglobin function reassessed. J Exp Biol 206(Pt 12):2011–2020.
Chung Y, Jue T. 1996. Cellular response to reperfused oxygen in the postischemic myocardium. Am J Physiol 271:H687–H695.
Garry DJ, Ordway GA, Lorenz JN, Radford NB, Chin ER, Grange RW, Bassel-Duby R, Williams RS. 1998. Mice without myoglobin. Nature 395:905–908.
Gödecke A, Flogel U, Zanger K, Ding Z, Hirchenhain J, Decking UK, Schrader J. 1999. Disruption of myoglobin in mice induces multiple compensatory mechanisms. Proc Natl Acad Sci USA 96(18):10495–10500.
Wittenberg JB. 1970. Myoglobin-facilitated oxygen diffusion: role of myoglobin in oxygen entry into muscle. Physiol Rev 50:559–636.
Johnson RL, Heigenhauser GJF, Hsia CCW, Jones NL, Wagner PD. 1996. Determinants of gas exchange and acid-base balance during exercise. In Exercise: regulation and integration of multiple systems, pp. 515–584. Ed LB Rowell, JT Shepher. New York: Oxford UP.
Riveros-Moreno V, Wittenberg JB. 1972. The self-diffusion coefficients of myoglobin and hemoglobin in concentrated solution. J Biol Chem 247:895–901.
Baylor SM, Pape PC. 1988. Measurement of myoglobin diffusivity in the myoplasm of frog skeletal muscle fibres. J Physiol 406:247–275.
Moll W. 1968. The diffusion coefficient of myoglobin in muscle homogenate. Pflugers Arch Gesamte Physiol Menschen Tiere 299(3):247–251.
Verkman AS. 2003. Diffusion in cells measured by fluorescence recovery after photobleaching. Methods Enzymol 360:635–648.
Papadopoulos S, Endeward V, Revesz-Walker B, Jurgens KD, Gros G. 2001. Radial and longitudinal diffusion of myoglobin in single living heart and skeletal muscle cells. Proc Natl Acad Sci USA 98:5904–5909.
Groebe K. 1995. An easy-to-use model for O2 supply to red muscle: validity of assumptions, sensitivity to errors in data. Biophys J 68(4):1246–1269.
Chung Y, Jue T. 1999. Regulation of respiration in myocardium in the transient and steady state. Am J Physiol 277(4 Pt 2):H1410–H1417.
Kreutzer U, Jue T. 2004. The role of myoglobin as a scavenger of cellular NO in myocardium. Am J Physiol 286:H985–H991.
Kreutzer U, Wang DS, Jue T. 1992. Observing the 1H NMR signal of the myoglobin Val-E11 in myocardium: an index of cellular oxygenation. Proc Natl Acad Sci USA 89:4731–4733.
Kreutzer U, Chung Y, Butler D, Jue T. 1993. 1H-NMR characterization of the human myocardium myoglobin and erythrocyte hemoglobin signals. Biochim Biophys Acta 1161:33–37.
Lin PC, Kreutzer U, Jue T. 2007. Myoglobin translational diffusion in myocardium and its implication on intracellular oxygen transport. J Physiol 578:595–603.
Lin PC, Kreutzer U, Jue T. 2007. Anisotropy and temperature dependence of myoglobin translational diffusion in myocardium: implication on oxygen transport and cellular architecture. Biophy J 92:2608–2620.
Wang D, Kreutzer U, Chung Y, Jue T. 1997. Myoglobin and hemoglobin rotational diffusion in the cell. Biophys J 73:2764–2770.
Federspiel WJ. 1986. A model study of intracellular oxygen gradients in a myoglobin-containing skeletal muscle fiber. Biophys J 49:857–868.
Papadopoulos S, Jurgens KD, Gros G. 1995. Diffusion of myoglobin in skeletal muscle cells: dependence on fibre type, contraction and temperature. Pflugers Arch Eur J Physiol 430:519–525.
Jurgens KD, Peters T, Gros G. 1994. Diffusivity of myoglobin in intact skeletal muscle cells. Proc Natl Acad Sci USA 91:3829–3833.
Iles RA, Stevens AN, Griffiths JR, Morris PG. 1985. Phosphorylation status of the liverby 31P NMR spectroscopy and its implications for metabolic control. Biochem J 229:141–151.
Gros G, Lavalette D, Moll W, Gros H, Amand B, Pochon F. 1984. Evidence for rotational contribution to protein-facilitated proton transport. Proc Natl Acad Sci USA 81(6):1710–1714.
Wyman J. 1966. Facilitated diffusion and the possible role of myoglobin as a transport mechanism. J Biol Chem 241:115–121.
Bentley TB, Meng H, Pittman RN. 1993. Temperature-dependence of oxygen diffusion and consumption in mammalian striated-muscle. Am J Physiol 264(6):H1825–H1830.
Kreutzer U, Mekhamer Y, Tran TK, Jue T. 1998. Role of oxygen in limiting respiration in the in situ myocardium. J Mol Cell Cardiol 30:2651–2655.
Kreutzer U, Mekhamer Y, Chung Y, Jue T. 2001. Oxygen supply and oxidative phosphorylation limitation in rat myocardium in situ. Am J Physiol Heart Circ Physiol 280:H2030–H2037.
Zhang J, Murakami Y, Zhang Y, Cho Y, Ye Y, Gong G, Bache RJ, Ugurbil K, From AH. 1999. Oxygen delivery does not limit cardiac performance during high work states. Am J Physiol 276(45):H50–H57.
Chung Y, Glabe A, Huang SJ. 2006. Impact of myoglobin inactivation on myocardial function. Am J Physiol 290:C1616–C1624.
Glabe A, Chung Y, Xu D, Jue T. 1998. Carbon monoxide inhibition of regulatory pathways in myocardium. Am J Physiol 274:H2143–H2151.
Schenkman KA, Marble DR, Burns DH, Feigl EO. 1997. Myoglobin oxygen dissociation by multiwavelength spectroscopy. J Appl Physiol 82(1):86–92.
Mole PA, Chung Y, Tran TK, Sailasuta N, Hurd R, Jue T. 1999. Myoglobin desaturation with exercise intensity in human gastrocnemius muscle. Am J Physiol 277(1 Pt 2):R173–R180.
Chung Y, Mole PA, Sailasuta N, Tran TK, Hurd R, Jue T. 2005. Control of respiration and bioenergetics during muscle contraction. Am J Physiol Cell Physiol 288:C730–C738.
Wang Z, Noyszewski EA, Leigh JS. 1990. In vivo MRS measurement of deoxymyoglobin in human forearms. Magn Reson Med 14:562–567.
Mancini DM, Wilson JR, Bolinger L, Li H, Kendrick K, Chance B, Leigh JS. 1994. In vivo magnetic resonance spectroscopy measurement of deoxymyoglobin during exercise in patients with heart failure. Circulation 90:500–508.
Kindig CA, Howlett RA, Hogan MC. 2003. Effect of extracellular pO2 on the fall in intracellular pO2 in contracting single myocytes. J Appl Physiol 94:1964–1970.
Behnke BJ, Kindig CA, Musch TI, Koga S, Poole DC. 2000. Dynamics of microvascular oxygen pressure across the rest–exercise transition in rat skeletal muscle. Respir Physiol 126:53–63.
Blei ML, Conley KE, Kushmerick MJ. 1993. Separate measures of ATP utilization and recovery in human skeletal muscle. J Physiol 465:203–222.
Sako T, Hamaoka T, Higuchi H, Kurodawa Y, Katsumura T. 2000. Validity of NIR spectroscopy for quantitatively measuring muscle oxidative metabolic rate in exercise. J Appl Physiol 90:338–344.
Tran TK, Sailasuta N, Kreutzer U, Hurd R, Chung Y, Mole P, Kuno S, Jue T. 1999. Comparative analysis of NMR and NIRS measurements of intracellular pO2 in human skeletal muscle. Am J Physiol 276:R1682–R1690.
Kindig CA, Kelley KM, Howlett RA, Stary CM, Hogan MC. 2002. Assessment of O2 uptake dynamics in isolated single skeletal myocytes. J Appl Physiol 94:353–357.
Swaminathan R, Hoang CP, Verkman AS. 1997. Photobleaching recovery and anisotropy decay of green fluorescent protein GFP-S65T in solution and cells: cytoplasmic viscosity probed by green fluorescent protein translational and rotational diffusion. Biophys J 72(4):1900–1907.
Maughan DW, Godt RE. 1999. Parvalbumin concentration and diffusion coefficient in frog myoplasm. J Muscle Res Cell Motil 20(2):199–209.
Lide DR, Frederikse HPR. 1990. CRC handbook of chemistry and physics, 71st ed. Boca Raton: CRC Press.
Mastro AM, Babich MA, Taylor WD, Keith AD. 1984. Diffusion of a small molecule in the cytoplasm of mammalian-cells. Proc Natl Acad Sci USA 81(11):3414–3418.
Luby-Phelps K, Lanni F, Taylor DL. 1988. The submicroscopic properties of cytoplasm as a determinant of cellular function. Annu Rev Biophys Biophys Chem 17:369–396.
Kataoka M, Nishii I, Fujisawa T, Ueki T, Tokunaga F, Goto Y. 1995. Structural characterization of the molten globule and native states of apomyoglobin by solution x-ray-scattering. J Mol Biol 249(1):215–228.
de Graaf RA, van Kranenburg A, Nicolay K. 2000. In vivo 31P-NMR diffusion spectroscopy of ATP and phosphocreatine in rat skeletal muscle. Biophys J 78(4):1657–1664.
van Gelderen P, DesPres D, van Zijl PC, Moonen CT. 1994. Evaluation of restricted diffusion in cylinders: phosphocreatine in rabbit leg muscle. J Magn Reson B 103(3):255–260.
Arrio-Dupont M, Cribier S, Foucault G, Devaux PF, d'Albis A. 1996. Diffusion of fluorescently labeled macromolecules in cultured muscle cells. Biophy J 70:2327–2332.
Kirkwood SP, Munn EA, Brooks GA. 1986. Mitochondrial reticulum in limb skeletal muscle. Am J Physiol 251(3 Pt 1):C395–C402.
Kao HP, Abney JR, Verkman AS. 1993. Determinants of the translational mobility of a small solute in cell cytoplasm. J Cell Biol 120(1):175–184.
Seksek O, Biwersi J, Verkman AS. 1997. Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus. J Cell Biol 138(1):131–142.
Swaminathan R, Bicknese S, Periasamy N, Verkman AS. 1996. Cytoplasmic viscosity near the cell plasma membrane: translational diffusion of a small fluorescent solute measured by total internal reflection-fluorescence photobleaching recovery. Biophys J 71(2):1140–1151.
Fushimi K, Dix JA, Verkman AS. 1990. Cell membrane fluidity in the intact kidney proximal tubule measured by orientation-independent fluorescence anisotropy imaging. Biophys J 57(2):241–254.
Goodsell DS. 1991. Inside a living cell. Trends Biochem Sci 16(6):203–206.
Sumegi B, Sherry AD, Malloy CR, Evans C, Srere PA. 1991. Is there tight channelling in the tricarboxylic acid cycle metabolon? Biochem Soc Trans 19(4):1002–1005.
Welch GR, Marmillot PR. 1991. Metabolic “channeling” and cellular physiology. J Theor Biol 152(1):29–33.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2009 Humana Press
About this chapter
Cite this chapter
Jue, T. (2009). NMR Measurement of Biomolecule Diffusion. In: Jue, T. (eds) Fundamental Concepts in Biophysics. Handbook of Modern Biophysics. Humana Press. https://doi.org/10.1007/978-1-59745-397-4_7
Download citation
DOI: https://doi.org/10.1007/978-1-59745-397-4_7
Published:
Publisher Name: Humana Press
Print ISBN: 978-1-58829-973-4
Online ISBN: 978-1-59745-397-4
eBook Packages: Physics and AstronomyPhysics and Astronomy (R0)