Skip to main content

Catalytically Enhanced Endocellulase CeI5A from Acidothermus cellulolyticus

  • Chapter
Twenty-Sixth Symposium on Biotechnology for Fuels and Chemicals

Abstract

When Tyr245 in endocellulase Cel5A from Acidothermus cellulolyticus was changed to Gly (Y245G) by designed mutation, the value of K i for inhibition of the enzyme by the product cellobiose was increased more than 1480%. This reduction in product inhibition enabled the mutant enzyme (used in conjunction with Trichoderma reesei cellobiohydrolase-I) to release soluble sugars from biomass cellulose at a rate as much as 40% greater than that achieved by the wild-type (WT) enzyme. The mutant was designed on the basis of the previously published crystal structure of the WT enzyme/substrate complex (at a resolution of 2.4 Å), which provided insights into the enzyme mechanism at the atomic level and identified Tyr245 as a key residue interacting with a leaving group. To determine the origin of the change in activity, the crystal structure of Y245G was solved at 2.4-Å resolution to an R-factor of 0.19 (R-free = 0.25). To obtain additional information on the enzyme-product interactions, density functional calculations were performed on representative fragments of the WT Cel5A and Y245G. The combined results indicate that the loss of the platform (Y245G) and of a hydrogen bond (from a conformational change in Gln247) reduces the binding energy between product and enzyme by several kilo calories per mole. Both kinetic and structural analyses thus relate the increased enzymatic activity to reduced product inhibition.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 259.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Wyman, C. E., Bain, R. L, Hinman, N. D., and Stevens, D. J. (1993), in Renewable Energy: Sources for Fuels and Electricity, Johansson, T. B., Kelly, H., Reddy, A. K. N., and Williams, R. H., eds., Island Press, Washington, DC.

    Google Scholar 

  2. Sheehan, J. J. (1994), in Enzymatic Conversion of Biomass for Fuels Production, ACS Series 566, Himmel, M. E., Baker, J. O., and Overend, R. P., eds., American Chemical Society, Washington, DC, pp. 1–52.

    Google Scholar 

  3. Bergeron, P. (1996), in Handbook on Bioethanol Wyman, C. E., ed., Taylor & Francis, Washington, DC, pp. 61–88.

    Google Scholar 

  4. Hsu, T.-A. (1996), in Handbook on Bioethanol, Wyman, C. E. ed., Taylor & Francis, Washington, DC, pp. 179–195.

    Google Scholar 

  5. Himmel, M. E., Adney, W. S., Baker, J. O., Elander, R., McMillan, J. D., Nieves, R. A., Sheehan, J. J., Thomas, S. R., Vinzant, T. B., and Zhang, M. (1997), in Fuels and Chemicals from Biomass, ACS Series 666, American Chemical Society, Washington, DC, pp. 2–15.

    Google Scholar 

  6. Himmel, M. E., Adney, W. S., Grohmann, K., and Tucker, M. P. (1994), US patent 5,275,944.

    Google Scholar 

  7. Divne, C, Stahlberg, J., Reinikainen, T., Ruohonen, L., Pettersson, G., Knowles, J. K. C, Teeri, T. T., and Jones, A. (1994), Science 265, 524–528.

    Article  PubMed  CAS  Google Scholar 

  8. Baker, J. O., Adney, W. S., Thomas, S. R., Nieves, R. A., Chou, Y.-C, Vinzant, T. B., Tucker, M. P., Laymon, R. A., and Himmel, M. E. (1995), in Enzymatic Degradation of Insoluble Carbohydrates, ACS Series 618, Saddler, J. N., and Penner, M. H., eds., American Chemical Society, Washington, DC, pp. 113–141.

    Google Scholar 

  9. Irwin, D. C, Spezio, M., Walker, L. P., and Wilson, D. B. (1993), Biotechnol. Bioeng. 42, 1002–1013.

    Article  CAS  PubMed  Google Scholar 

  10. Sakon, J., Adney, W. S., Himmel, M. E., Thomas, S. R., and Karplus, P. A. (1996), Biochemistry 35, 10,648–10,660.

    Article  PubMed  CAS  Google Scholar 

  11. Koshland, D. E. J. (1953), Biol. Rev. 28, 416–36.

    CAS  Google Scholar 

  12. McCarter, J. D. and Withers, S. G. (1994), Curr. Opin. Struct. Biol. 4, 885–892.

    Article  PubMed  CAS  Google Scholar 

  13. Sinnott, M. L. (1990), Chem. Rev. 90, 1171–1202.

    Article  CAS  Google Scholar 

  14. Rouvinen, J., Bergfors, T., Teeri, T., Knowles, J. K. C, and Jones, T. A. (1990), Science 249, 380–386.

    Article  PubMed  CAS  Google Scholar 

  15. Spezio, M., Wilson, D. B., and Karplus, P. A. (1993), Biochemistry 32, 9906–9916.

    Article  PubMed  CAS  Google Scholar 

  16. Sakon, J., Irwin, D., Wilson, D. B., and Karplus, P. A. (1997), Nat. Struct. Biol. 4, 810–818.

    Article  PubMed  CAS  Google Scholar 

  17. Moreau, A., Shareck, E, Kluepfel, D., and Morosoli, R. (1994), Eur. J. Biochem. 219, 261–266.

    Article  PubMed  CAS  Google Scholar 

  18. Parr, R. G. and Yang, W. (1989), Density-Functional Theory of Atoms and Molecules, Oxford University Press, Oxford, UK.

    Google Scholar 

  19. Baker, J. O., Ehrman, C. I., Adney, W. S., Thomas, S. R., and Himmel, M. E. (1998), Appl. Biochem. Biotechnol. 70, 395–403.

    PubMed  Google Scholar 

  20. Baker, J. O., Vinzant, T. B., Ehrman, C. I., Adney, W. S., and Himmel, M. E. (1997), Appl. Biochem. Biotechnol. 63-65, 585–595.

    Article  CAS  PubMed  Google Scholar 

  21. Thomas, S. R., Laymon, R. A., Chou, Y.-C, Tucker, M. P., Vinzant, T. B., Adney, W. S., Baker, J. O., Nieves, R. A., Mielenz, J. R., and Himmel, M. E. (1995), in Enzymatic Degradation of Insoluble Polysaccharides, ACS Series 618, Saddler, J. N. and Penner, M. H., eds., American Chemical Society, Washington, DC, pp. 208–236.

    Google Scholar 

  22. Segel, I. H. (1975), in Enzyme Kinetics, John Wiley & Sons, New York, pp. 109–111.

    Google Scholar 

  23. Snedecor, G. W. and Cochran, W. G. (1967), Statistical Methods, Iowa State University Press, Ames.

    Google Scholar 

  24. Pearson, E. S. and Hartley, H. O. (1970), Biometrika Tables for Statisticians, Cambridge University Press, Cambridge, UK.

    Google Scholar 

  25. Otwinowski, Z. (1993), in Proceedings of the CCP4 Study Weekend: Data Collection and Processing, SERC Daresbury Laboratory, Warrington, UK.

    Google Scholar 

  26. Sheldrick, G. M. (1990), Ada Crystallogr. Sect. A 46, 467–473.

    Article  Google Scholar 

  27. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993), J. Appl. Crystallogr. 26, 283–291.

    Article  CAS  Google Scholar 

  28. Vriend, G. (1990), J. Mol. Graph. 8, 52–56.

    Article  PubMed  CAS  Google Scholar 

  29. Krishnan, R., Binkley, J. S., Seeger, R., and Pople, J. A. (1980), J. Chem. Phys. 72, 650–654.

    Article  CAS  Google Scholar 

  30. Becke, A. D. (1993), J. Chem. Phys. 98, 5648–5652.

    Article  CAS  Google Scholar 

  31. Frisch, M. J. (1995), Gaussian 94, Gaussian, Pittsburgh, PA.

    Google Scholar 

  32. Ramek, M., Momany, F. A., Miller, D. M., and Schäfer, L. (1996), J. Mol. Struct. 375, 189–191.

    Article  CAS  Google Scholar 

  33. Nidetzky, B., Steiner, W, and Claeyssens, M. (1994), Biochem. J. 303, 817–823.

    PubMed  CAS  Google Scholar 

  34. Ghose, T. K. (1987), Pure Appl. Chem. 59, 257–268.

    Article  CAS  Google Scholar 

  35. Karplus, P. A. (1996), Protein Sci. 5, 1406–1420.

    Article  PubMed  CAS  Google Scholar 

  36. Stites, W. E., Meeker, A. K., and Shortle, D. (1994), J. Mol. Biol. 235, 27–32.

    PubMed  CAS  Google Scholar 

  37. Kuriyan, J. and Weis, W. I. (1991), Proc. Natl. Acad. Sci. USA 88, 2773–2777.

    Article  PubMed  CAS  Google Scholar 

  38. Ringe, D. and Petsko, G. A. (1986), Methods Enzymol. 131, 389–433.

    PubMed  CAS  Google Scholar 

  39. Stroud, R. M. and Fauman, E. B. (1995), Protein Sci. 4, 2392–2404.

    PubMed  CAS  Google Scholar 

  40. Diederichs, K. and Karplus, P. A. (1997), Nat. Struct. Biol. 4, 269–275.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Humana Press Inc.

About this chapter

Cite this chapter

Baker, J.O. et al. (2005). Catalytically Enhanced Endocellulase CeI5A from Acidothermus cellulolyticus . In: Davison, B.H., Evans, B.R., Finkelstein, M., McMillan, J.D. (eds) Twenty-Sixth Symposium on Biotechnology for Fuels and Chemicals. ABAB Symposium. Humana Press. https://doi.org/10.1007/978-1-59259-991-2_12

Download citation

Publish with us

Policies and ethics