Abstract
Several bacterial species have regulatory networks that enable global alterations in gene expression in response to changes in local cell density. This process, commonly referred to as quorum sensing, typically leads to the regulation of cooperative processes such as bioluminescence and biofilm formation. Here, we provide an overview of the quorum-sensing network in the marine bacterium Vibrio harveyi and focus on studies based on theoretical modeling approaches. These studies have led to testable predictions for experiments that can further elucidate roles of pathway elements such as small RNAs in shaping and fine-tuning the quorum-sensing response to changes in cell density. Furthermore, single-cell analysis has provided new insights into information processing by the quorum sensing pathway and opened up new avenues for future research.
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References
Miller MB, Bassler BL (2001) Quorum sensing in bacteria. Annu Rev Microbiol 55:165–199
Waters CM, Bassler BL (2005) Quorum sensing: cell-to-cell communication in bacteria. Annu Rev Cell Dev Biol 21:319–346
Ng WL, Bassler BL (2009) Bacterial quorum-sensing network architectures. Annu Rev Genet 43:197–222
Appleby JL, Parkinson JS, Bourret RB (1996) Signal transduction via the multi-step phosphorelay: not necessarily a road less traveled. Cell 86:845–848
Laub MT, Goulian M (2007) Specificity in two-component signal transduction pathways. Annu Rev Genet 41:121–145
Henke JM, Bassler BL (2004) Three parallel quorum-sensing systems regulate gene expression in Vibrio harveyi. J Bacteriol 186:6902–6914
Mok KC, Wingreen NS, Bassler BL (2003) Vibrio harveyi quorum sensing: a coincidence detector for two autoinducers controls gene expression. EMBO J 22:870–881
Waters CM, Bassler BL (2006) The Vibrio harveyi quorum-sensing system uses shared regulatory components to discriminate between multiple autoinducers. Genes Dev 20:2754–2767
Tu KC, Bassler BL (2007) Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. Genes Dev 21:221–233
Bassler BL, Miller MB (2013) Quorum sensing. In: The prokaryotes. Springer, New York, pp 495–509
Banik SK, Fenley AT, Kulkarni RV (2009) A model for signal transduction during quorum sensing in Vibrio harveyi. Phys Biol 6:046008–046008
Long T, Tu KC, Wang Y, Mehta P, Ong NP, Bassler BL, Wingreen NS (2009) Quantifying the integration of quorum-sensing signals with single-cell resolution. PLoS Biol 7
Fenley AT, Banik SK, Kulkarni RV (2011) Computational modeling of differences in the quorum sensing induced luminescence phenotypes of Vibrio harveyi and Vibrio cholerae. J Theor Biol 274:145–153
Hunter GAM, Vasquez FG, Keener JP (2013) A mathematical model and quantitative comparison of the small RNA circuit in the Vibrio harveyi and Vibrio cholerae quorum sensing systems. Phys Biol 10(4):046007
Hunter GAM, Keener JP (2014) Mechanisms additive and redundant qrr phenotypes in Vibrio harveyi and Vibrio cholerae. J Theor Biol 340:38–49
Lenz DH, Mok KC, Lilley BN, Kulkarni RV, Wingreen NS, Bassler BL (2004) The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118:69–82
Levine E, Zhang Z, Kuhlman T, Hwa T (2007) Quantitative characteristics of gene regulation by small RNA. PLoS Biol 5:e229–e229
Levine E, Hwa T (2008) Small RNAs establish gene expression thresholds. Curr Opin Microbiol 11:574–579
Mehta P, Goyal S, Wingreen NS (2008) A quantitative comparison of sRNA-based and protein-based gene regulation. Mol Syst Biol 4:221–221
Mitarai N, Andersson AM, Krishna S, Semsey S, Sneppen K (2007) Efficient degradation and expression prioritization with small RNAs. Phys Biol 4:164–171
Mitarai N, Benjamin JA, Krishna S, Semsey S, Csiszovszki Z, Massé E, Sneppen K (2009) Dynamic features of gene expression control by small regulatory RNAs. Proc Natl Acad Sci USA 106:10655–10659
Chatterjee J, Miyamoto CM, Meighen EA (1996) Autoregulation of luxR: the Vibrio harveyi lux-operon activator functions as a repressor. Mol Microbiol 20:415–425
Teng SW, Schaffer JN, Tu KC, Mehta P, Lu W, Ong NP, Bassler BL, Wingreen NS (2011) Active regulation of receptor ratios controls integration of quorum-sensing signals in Vibrio harveyi. Mol Syst Biol 7:491–491
Mehta P, Goyal S, Long T, Bassler BL, Wingreen NS (2009) Information processing and signal integration in bacterial quorum sensing. Mol Syst Biol 5:325–325
Teng SW, Wang Y, Tu KC, Long T, Mehta P, Wingreen NS, Bassler BL, Ong NP (2010) Measurement of the copy number of the master quorum-sensing regulator of a bacterial cell. Biophys J 98:2024–2031
Svenningsen SL, Tu KC, Bassler BL (2009) Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing. EMBO J 28:429–439
Cai L, Friedman N, Xie XS (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440:358–362
Friedman N, Cai L, Xie XS (2006) Linking stochastic dynamics to population distribution: an analytical framework of gene expression. Phys Rev Lett 97:168302–168302
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB (2005) Gene regulation at the single-cell level. Science 307:1962–1965
Rosenfeld N, Perkins TJ, Alon U, Elowitz MB, Swain PS (2006) A fluctuation method to quantify in vivo fluorescence data. Biophys J 91:759–766
Timmen M, Bassler BL, Jung K (2006) Ai-1 influences the kinase activity but not the phosphatase activity of LuxN of Vibrio harveyi. J Biol Chem 281:24398–24404
Anetzberger C, Reiger M, Fekete A, Schell U, Stambrau N, Plener L, Kopka J, Schmitt-Kopplin P, Hilbi H, Jung K (2012) Autoinducers act as biological timers in Vibrio harveyi. PLoS ONE 7:e48310
Tu KC, Long T, Svenningsen SL, Wingreen NS, Bassler BL (2010) Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response. Mol Cell 37:567–579
Rutherford ST, van Kessel JC, Shao Y, Bassler BL (2011) AphA and LuxR/HapR reciprocally control quorum sensing in Vibrios. Genes Dev 25(4):397–408
van Kessel JC, Rutherford ST, Shao Y, Utria AF, Bassler BL (2013) Individual and combined roles of the master regulators AphA and LuxR in control of the Vibrio harveyi quorum-sensing regulon. J Bacteriol 195(3):436–443
Acknowledgements
AB is thankful to CSIR (09/015(0375)/2009-EMR-I) for research fellowship. SKB acknowledges support from Bose Institute through Institutional Programme VI—Development of Systems Biology. RVK would like to acknowledge funding support from the NSF through award PHY-0957430.
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Bandyopadhyay, A., Fenley, A.T., Banik, S.K., Kulkarni, R.V. (2015). Modeling of Signal Transduction by the Quorum-Sensing Pathway in the Vibrios. In: Hagen, S. (eds) The Physical Basis of Bacterial Quorum Communication. Biological and Medical Physics, Biomedical Engineering. Springer, New York, NY. https://doi.org/10.1007/978-1-4939-1402-9_2
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DOI: https://doi.org/10.1007/978-1-4939-1402-9_2
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