Abstract
Since its inception two decades ago, functional magnetic resonance imaging (fMRI) has become a leading tool for noninvasive studies of the human brain. fMRI studies require both the rapid acquisition of many brain images over a sustained period of time and a high level of MRI system stability in order to detect small activity-related fluctuations in the MR signal. These rigorous requirements have driven many improvements in the performance of MRI systems. Quality assurance (QA) procedures are critical for identifying issues with system performance and ensuring that the desired level of system stability and image quality is achieved. In addition, ongoing QA of experimental data is important for detecting issues with not only the MRI system but also other key experimental elements such as task performance, movement artifacts, and stimulus presentation equipment. Given the large size of the datasets generated by fMRI studies, QA processes rely heavily on computer-based analyses coupled with the assessment of the QA metrics by a human expert. A well-designed QA process is especially critical for ensuring data quality and uniformity for fMRI studies involving multiple sites. These multicenter studies have a number of advantages, such as increased sample size, and are becoming more widely adopted.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Behzadi Y, Restom K, Liau J, Liu TT (2007) A component based noise correction method (CompCor) for BOLD and perfusion based fMRI. Neuroimage 37:90–101
Birn RM, Diamond JB, Smith MA, Bandettini PA (2006) Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI. Neuroimage 31:1536–1548
Birn RM, Murphy K, Bandettini PA (2008) The effect of respiration variations on independent component analysis results of resting state functional connectivity. Hum Brain Mapp 29:740–750
Brown GG, McCarthy G, Bischoff-Grethe A, Ozyurt B, Greve D, Potkin SG, Turner JA, Notestine R, Calhoun VD, Ford JM, Mathalon D, Manoach DS, Gadde S, Glover GH, Wible CG, Belger A, Gollub RL, Lauriello J, O’Leary D, Lim KO (2009) Brain-performance correlates of working memory retrieval in schizophrenia: a cognitive modeling approach. Schizophr Bull 35:32–46
Brown GG, Mathalon DH, Stern H, Ford J, Mueller B, Greve DN, McCarthy G, Voyvodic J, Glover G, Diaz M, Yetter E, Ozyurt IB, Jorgensen KW, Wible CG, Turner JA, Thompson WK, Potkin SG, FBIRN (2011) Multisite reliability of cognitive BOLD data. Neuroimage 54:2163–2175
Casey BJ, Cohen JD, O’Craven K, Davidson RJ, Irwin W, Nelson CA, Noll DC, Hu X, Lowe MJ, Rosen BR, Truwitt CL, Turski PA (1998) Reproducibility of fMRI results across four institutions using a spatial working memory task. Neuroimage 8:249–261
Chang C, Glover GH (2009) Effects of model-based physiological noise correction on default mode network anti-correlations and correlations. Neuroimage 47:1448–1459
Chang C, Cunningham JP, Glover GH (2009) Influence of heart rate on the BOLD signal: the cardiac response function. Neuroimage 44:857–869
Cox RW, Jesmanowicz A, Hyde JS (1995) Real-time functional magnetic resonance imaging. Magn Reson Med 33:230–236
Cramer SC, Benson RR, Himes DM, Burra VC, Janowsky JS, Weinand ME, Brown JA, Lutsep HL (2005) Use of functional MRI to guide decisions in a clinical stroke trial. Stroke 36:e50–52
Ford JM, Roach BJ, Jorgensen KW, Turner JA, Brown GG, Notestine R, Bischoff-Grethe A, Greve D, Wible C, Lauriello J, Belger A, Mueller BA, Calhoun V, Preda A, Keator D, O’Leary DS, Lim KO, Glover G, Potkin SG, FBIRN, Mathalon DH (2009) Tuning in to the voices: a multisite FMRI study of auditory hallucinations. Schizophr Bull 35:58–66
Friedman L, Glover GH (2006) Report on a multicenter fMRI quality assurance protocol. J Magn Reson Imaging 23:827–839
Friedman L, Glover GH, Krenz D, Magnotta V, FBIRN (2006) Reducing inter-scanner variability of activation in a multicenter fMRI study: role of smoothness equalization. Neuroimage 32:1656–1668
Friedman L, Stern H, Brown GG, Mathalon DH, Turner J, Glover GH, Gollub RL, Lauriello J, Lim KO, Cannon T, Greve DN, Bockholt HJ, Belger A, Mueller B, Doty MJ, He J, Wells W, Smyth P, Pieper S, Kim S, Kubicki M, Vangel M, Potkin SG (2008) Test-retest and between-site reliability in a multicenter fMRI study. Hum Brain Mapp 29:958–972
Gadde S, Aucoin N, Grethe JS, Keator DB, Marcus DS, Pieper S, FBIRN, MBIRN, BIRN-CC (2012) XCEDE: an extensible schema for biomedical data. Neuroinformatics 10(1):19–32
Glover GH, Li TQ, Ress D (2000) Image-based method for retrospective correction of physiological motion effects in fMRI: RETROICOR. Magn Reson Med 44:162–167
Glover GH, Mueller BA, Turner JA, Erp TGMv, Liu TT, Greve DN, Voyvodic JT, Rasmussen J, Brown GG, Keator DB, Calhoun VD, Lee HJ, Ford JM, Mathalon DH, Diaz M, O’Leary DS, Gadde S, Preda A, Lim KO, Wible CG, Stern HS, McCarthy G, Ozyurt B, Potkin SG, FBIRN (2012) Function biomedical informatics research network recommendations for prospective multi-center functional magnetic resonance imaging studies. J Magn Reson 36(1):39–54
Greve DN, Mueller BA, Liu T, Turner JA, Voyvodic J, Yetter E, Diaz M, McCarthy G, Wallace S, Roach BJ, Ford JM, Mathalon DH, Calhoun VD, Wible CG, Brown GG, Potkin SG, Glover G (2011) A novel method for quantifying scanner instability in fMRI. Magn Reson Med 65:1053–1061
Hu X, Le TH, Parrish T, Erhard P (1995) Retrospective estimation and correction of physiological fluctuation in functional MRI. Magn Reson Med 34:201–212
Jorgensen KW, Bischoff-Grethe AA, Brown GG, Fennema-Notestine C, Gadde S, Greve DN, Mueller BA, Notestine R, Ozyurt B, Potkin SG, Turner JA, Mathalon DH, FBIRN (2009) Assessing the impact of fMRI data quality on group level analyses in the FBIRN multi-site study of schizophrenia patients and healthy controls. Annual meeting of the Organization for Human Brain Mapping, San Francisco
Keator DB, Grethe JS, Marcus D, Ozyurt B, Gadde S, Murphy S, Pieper S, Greve D, Notestine R, Bockholt HJ, Papadopoulos P, FBIRN, MBIRN, BIRN-CC (2008) A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN). IEEE Trans Inf Technol Biomed 12:162–172
Kim DI, Manoach DS, Mathalon DH, Turner JA, Mannell M, Brown GG, Ford JM, Gollub RL, White T, Wible C, Belger A, Bockholt HJ, Clark VP, Lauriello J, O’Leary D, Mueller BA, Lim KO, Andreasen N, Potkin SG, Calhoun VD (2009) Dysregulation of working memory and default-mode networks in schizophrenia using independent component analysis, an fBIRN and MCIC study. Hum Brain Mapp 30:3795–3811
Kundu P, Inati S, Evans JW, Luh W-M, Bandettini PA (2012) Differentiating BOLD and Non-BOLD Signals in fMRI time series using multi-echo EPI. Neuroimage 60(3):1759–1770
Ojemann JG, Buckner RL, Akbudak E, Snyder AZ, Ollinger JM, McKinstry RC, Rosen BR, Petersen SE, Raichle ME, Conturo TE (1998) Functional MRI studies of word-stem completion: reliability across laboratories and comparison to blood flow imaging with PET. Hum Brain Mapp 6:203–215
Olsrud J, Nilsson A, Mannfolk P, Waites A, Ståhlberg, F (2008) A two-compartment gel phantom for optimization and quality assurance in clinical BOLD fMRI. Magn Reson Imaging 26:279–286
Ozyurt IB, Keator DB, Wei D, Fennema-Notestine C, Pease KR, Bockholt J, Grethe JS (2010) Federated web-accessible clinical data management within an extensible neuroimaging database. Neuroinformatics 8:231–249
Perlbarg V, Bellec P, Anton J-L, Pélégrini-Issac M, Doyon J, Benali H (2007) CORSICA: correction of structured noise in fMRI by automatic identification of ICA components. Magn Reson Imaging 25:35–46
Potkin SG, Ford JM (2009) Widespread cortical dysfunction in schizophrenia: the FBIRN imaging consortium. Schizophr Bull 35:15–18
Potkin SG, Turner JA, Brown GG, McCarthy G, Greve DN, Glover GH, Manoach DS, Belger A, Diaz M, Wible CG, Ford JM, Mathalon DH, Gollub R, Lauriello J, O’Leary D, van Erp TG, Toga AW, Preda A, Lim KO (2009a) Working memory and DLPFC inefficiency in schizophrenia: the FBIRN study. Schizophr Bull 35:19–31
Potkin SG, Turner JA, Guffanti G, Lakatos A, Fallon JH, Nguyen DD, Mathalon D, Ford J, Lauriello J, Macciardi F (2009b) A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype. Schizophr Bull 35:96–108
Potkin SG, Macciardi F, Vawter M, Guffanti G, Wang Q, Turner JA, Lakatos A, Miles M, Lander A, Xie X (2010) Identifying gene regulatory networks in Schizophrenia. Neuroimage 53:839–847
Pruessmann KP, Weiger M, Scheidegger MB, Boesiger P (1999) SENSE: sensitivity encoding for fast MRI. Magn Reson Med 42:952–962
Restom K, Behzadi Y, Liu TT (2006) Physiological noise reduction for arterial spin labeling functional MRI. Neuroimage 31:1104–1115
Rocca MA, Absinta M, Valsasina P, Ciccarelli O, Marino S, Rovira A, Gass A, Wegner C, Enzinger C, Korteweg T, Sormani MP, Mancini L, Thompson AJ, De Stefano N, Montalban X, Hirsch J, Kappos L, Ropele S, Palace J, Barkhof F, Matthews PM, Filippi M (2009) Abnormal connectivity of the sensorimotor network in patients with MS: a multicenter fMRI study. Hum Brain Mapp 30:2412–2425
Segall J, Bockholt HJ, Turner JA, van Erp T, Calhoun VD, FBIRN (2009) Voxel-based morphometric multi-center collaborative study on schizophrenia. Schizophr Bull 35(1):82–95
Simmons A, Moore E, Williams SC (1999) Quality control for functional magnetic resonance imaging using automated data analysis and Shewhart charting. Magn Reson Med 41:1274–1278
Stöcker T, Schneider F, Klein M, Habel U, Kellermann T, Zilles K, Shah NJ (2005) Automated quality assurance routines for fMRI data applied to a multicenter study. Hum Brain Mapp 25:237–246
Sutton BP, Goh J, Hebrank A, Welsh RC, Chee MWL, Park DC (2008) Investigation and validation of intersite fMRI studies using the same imaging hardware. J Magn Reson Imaging 28:21–28
Thomas CG, Harshman RA, Menon RS (2002) Noise reduction in BOLD-based fMRI using component analysis. Neuroimage 17:1521–1537
Vlieger E-J, Lavini C, Majoie CB, den Heeten GJ (2003) Reproducibility of functional MR imaging results using two different MR systems. Am J Neuroradiol 24:652–657
Voyvodic JT (1999) Real-time fMRI paradigm control, physiology, and behavior combined with near real-time statistical analysis. Neuroimage 10:91–106
Voyvodic JT, Glover GH, Greve D, Gadde S, FBIRN (2011) Automated real-time behavioral and physiological data acquisition and display integrated with stimulus presentation for fMRI. Front Neuroinform 5:27
Weiskopf N, Sitaram R, Josephs O, Veit R, Scharnowski F, Goebel R, Birbaumer N, Deichmann R, Mathiak K (2007) Real-time functional magnetic resonance imaging: methods and applications. Magn Reson Imaging 25:989–1003
Weisskoff RM (1996) Simple measurement of scanner stability for functional NMR imaging of activation in the brain. Magn Reson Med 36:643–645
Wible CG, Lee K, Molina I, Hashimoto R, Preus AP, Roach BJ, Ford JM, Mathalon DH, McCarthey G, Turner JA, Potkin SG, O’Leary D, Belger A, Diaz M, Voyvodic J, Brown GG, Notestine R, Greve D, Lauriello J, FBIRN (2009) fMRI activity correlated with auditory hallucinations during performance of a working memory task: data from the FBIRN consortium study. Schizophr Bull 35:47–57
Yeo BTT, Krienen FM, Sepulcre J, Sabuncu MR, Lashkari D, Hollinshead M, Roffman JL, Smoller JW, Zöllei L, Polimeni JR, Fischl B, Liu H, Buckner RL (2011) The organization of the human cerebral cortex estimated by intrinsic functional connectivity. J Neurophysiol 106:1125–1165
Zou KH, Greve DN, Wang M, Pieper SD, Warfield SK, White NS, Manandhar S, Brown GG, Vangel MG, Kikinis R, Wells WM, 3rd (2005) Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network. Radiology 237:781–789
Author information
Authors and Affiliations
Consortia
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2015 Springer New York
About this chapter
Cite this chapter
Liu, T. et al. (2015). Quality Assurance in Functional MRI. In: Uludag, K., Ugurbil, K., Berliner, L. (eds) fMRI: From Nuclear Spins to Brain Functions. Biological Magnetic Resonance, vol 30. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-7591-1_10
Download citation
DOI: https://doi.org/10.1007/978-1-4899-7591-1_10
Published:
Publisher Name: Springer, Boston, MA
Print ISBN: 978-1-4899-7590-4
Online ISBN: 978-1-4899-7591-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)