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Structure and Post-Translational Modification of the Lipoyl Domain of 2-Oxo Acid Dehydrogenase Complexes: A New Family of Protein Domains

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Methods in Protein Sequence Analysis

Abstract

The 2-oxo acid dehydrogenase multienzyme complexes are among the best examples of multifunctional proteins fashioned from independently-folded protein domains joined by linker sequences of various lengths and degrees of conformational flexibility (Patel and Roche, 1990; Perham, 1991). The structural core of these complexes is provided by the dihydrolipoyl acyltransferase (E2) component, an aggregate of 24 or 60 polypeptide chains arranged with octahedral or icosahedral symmetry, respectively, according to the source. The E2 chains themselves are highly segmented: they comprise, from the N-terminus, up to three lipoyl domains, a peripheral subunit-binding domain, and a large core-forming acyltransferase domain, all linked together by long (25–30 residue) segments of polypeptide chain rich in alanine, proline and charged/hydrophilic amino acids (Reed and Hackert, 1990; Perham, 1991).

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References

  • Dardel, F., Packman, L. C. and Perham, R. N., 1990 Expression in Escherichia coli of a sub-gene encoding the lipoyl domain of the pyruvate dehydrogenase complex of Bacillus stearothermophilus, FEBS Lett. 264:206.

    Article  PubMed  CAS  Google Scholar 

  • Dardel, F., Laue, E. D. and Perham, R. N., 1991 Sequence-specific assignments and secondary structure of the lipoyl domain of the Bacillus stearothermophilus pyruvate dehydrogenase multienzyme complex, Eur. J. Biochem. 201:203.

    Article  PubMed  CAS  Google Scholar 

  • Dardel, F., Davis, A. L., Laue, E. D. and Perham, R. N., 1992 The three-dimensional structure of the lipoyl domain from Bacillus stearothermophilus pyruvate dehydrogenase multienzyme complex, J. Mol. Biol. in the press.

    Google Scholar 

  • Fujiwara, K., Okamura-Ikeda, K. and Motokawa, Y., 1991 Lipoylation of the H-protein of the glycine cleavage system, FEBS Lett. 293:115.

    Article  PubMed  CAS  Google Scholar 

  • Graham, L. D., Packman, L. C. and Perham, R. N., 1989 Kinetics and specificity of reductive acetylation of lipoyl domains from 2-oxo acid dehydrogenase complexes, Biochemistry 28:1574.

    Article  PubMed  CAS  Google Scholar 

  • Hale, G., Wallis, N. G. and Perham, R. N., 1992 Interaction of avidin with the lipoyl domains in the pyruvate dehydrogenase multienzyme complex: three-dimensional location and similarity to biotinyl domains in carboxylases, Proc. R. Soc. Lond. B. 248:247.

    Article  CAS  Google Scholar 

  • Hiraga, K. and Kikuchi, G., 1980 The mitochondrial glycine cleavage system: functional association of glycine decarboxylase and aminomethyl carrier proteins, J. Biol. Chem. 255:11671.

    PubMed  CAS  Google Scholar 

  • Kim, Y. H. and Oliver, D. J., 1990 Molecular cloning, transcriptional characterization, and sequence of cDNA encoding the H-protein of the mitochondrial glycine decarboxylase complex in peas, J. Biol. Chem. 265:848.

    PubMed  CAS  Google Scholar 

  • Kraulis, P. J., 1991 MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr. 24:946.

    Article  Google Scholar 

  • Lim, F., Morris, C. P., Occhiodoro, F. and Wallace, J.C., 1988 Sequence and domain structure of yeast pyruvate carboxylase, J. Biol. Chem. 263:11493.

    PubMed  CAS  Google Scholar 

  • Mattevi, A., Obmolova, G., Schulze, E., Kalk, K. H., Westphal, A., de Kok, A. and Hol, W. G. J., 1992 Atomic structure of the cubic core of the pyruvate dehydrogenase multienzyme complex, Science 255:1544.

    Article  PubMed  CAS  Google Scholar 

  • Packman, L. C., Perham, R. N. and Roberts, G. C. K., 1984 Domain structure and 1H-n.m.r. spectroscopy of the pyruvate dehydrogenase complex of Bacillus stearothermophilus, Biochem. J. 217:219.

    PubMed  CAS  Google Scholar 

  • Patel, M. S. and Roche, T. E., 1990 Molecular biology and biochemistry of pyruvate dehydrogenase complexes, FASEB J. 4:3224.

    PubMed  CAS  Google Scholar 

  • Perham, R. N., 1991 Domains, motifs and linkers in 2-oxo acid dehydrogenase multienzyme complexes: a paradigm in the design of a multifunctional protein, Biochemistry 30:8501.

    Article  PubMed  CAS  Google Scholar 

  • Reed, L. J. and Hackert, M. L., 1990 Structure-function relationships in dihydrolipoamide acyltransferases, J. Biol. Chem. 265:8971.

    PubMed  CAS  Google Scholar 

  • Robien, M. A., Clore, G. M., Omichinski, J. G., Perham, R. N., Appella, E., Sakaguchi, K. and Gronenborn, A., 1992 Three-dimensional solution structure of the E3-binding domain of the dihydrolipo amide succinyltransferase core from the 2-oxoglutarate dehydrogenase multienzyme complex of Escherichia coli, Biochemistry 31:3463.

    Article  PubMed  CAS  Google Scholar 

  • Russell, G. C and Guest, J. R., 1991 Sequence similarity within the family of dihydrolipoamide acyltransferases and discovery of a previously unidentified fungal enzyme, Biochim. Biophys. Acta 1076:225.

    Article  PubMed  CAS  Google Scholar 

  • Samols, D., Thornton, C. G., Murtif, V. L., Kumar, G. K., Haase, F. C. and Wood, H. G., 1988 Evolutionary conservation among biotin enzymes, J. Biol. Chem. 263:6461.

    PubMed  CAS  Google Scholar 

  • Sieker, L., Cohen-Addad, C., Neuberger, M. and Douce, R., 1991 Crystallographic data for H-protein from the glycine decarboxylase complex, J. Mol. Biol. 220:223.

    Article  PubMed  CAS  Google Scholar 

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© 1993 Springer Science+Business Media New York

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Perham, R.N., Wallis, N.G., Brocklehurst, S.M., Dardel, F., Davis, A.L., Laue, E.D. (1993). Structure and Post-Translational Modification of the Lipoyl Domain of 2-Oxo Acid Dehydrogenase Complexes: A New Family of Protein Domains. In: Imahori, K., Sakiyama, F. (eds) Methods in Protein Sequence Analysis. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-1603-7_37

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  • DOI: https://doi.org/10.1007/978-1-4899-1603-7_37

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4899-1605-1

  • Online ISBN: 978-1-4899-1603-7

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