Abstract
The 2-oxo acid dehydrogenase multienzyme complexes are among the best examples of multifunctional proteins fashioned from independently-folded protein domains joined by linker sequences of various lengths and degrees of conformational flexibility (Patel and Roche, 1990; Perham, 1991). The structural core of these complexes is provided by the dihydrolipoyl acyltransferase (E2) component, an aggregate of 24 or 60 polypeptide chains arranged with octahedral or icosahedral symmetry, respectively, according to the source. The E2 chains themselves are highly segmented: they comprise, from the N-terminus, up to three lipoyl domains, a peripheral subunit-binding domain, and a large core-forming acyltransferase domain, all linked together by long (25–30 residue) segments of polypeptide chain rich in alanine, proline and charged/hydrophilic amino acids (Reed and Hackert, 1990; Perham, 1991).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Dardel, F., Packman, L. C. and Perham, R. N., 1990 Expression in Escherichia coli of a sub-gene encoding the lipoyl domain of the pyruvate dehydrogenase complex of Bacillus stearothermophilus, FEBS Lett. 264:206.
Dardel, F., Laue, E. D. and Perham, R. N., 1991 Sequence-specific assignments and secondary structure of the lipoyl domain of the Bacillus stearothermophilus pyruvate dehydrogenase multienzyme complex, Eur. J. Biochem. 201:203.
Dardel, F., Davis, A. L., Laue, E. D. and Perham, R. N., 1992 The three-dimensional structure of the lipoyl domain from Bacillus stearothermophilus pyruvate dehydrogenase multienzyme complex, J. Mol. Biol. in the press.
Fujiwara, K., Okamura-Ikeda, K. and Motokawa, Y., 1991 Lipoylation of the H-protein of the glycine cleavage system, FEBS Lett. 293:115.
Graham, L. D., Packman, L. C. and Perham, R. N., 1989 Kinetics and specificity of reductive acetylation of lipoyl domains from 2-oxo acid dehydrogenase complexes, Biochemistry 28:1574.
Hale, G., Wallis, N. G. and Perham, R. N., 1992 Interaction of avidin with the lipoyl domains in the pyruvate dehydrogenase multienzyme complex: three-dimensional location and similarity to biotinyl domains in carboxylases, Proc. R. Soc. Lond. B. 248:247.
Hiraga, K. and Kikuchi, G., 1980 The mitochondrial glycine cleavage system: functional association of glycine decarboxylase and aminomethyl carrier proteins, J. Biol. Chem. 255:11671.
Kim, Y. H. and Oliver, D. J., 1990 Molecular cloning, transcriptional characterization, and sequence of cDNA encoding the H-protein of the mitochondrial glycine decarboxylase complex in peas, J. Biol. Chem. 265:848.
Kraulis, P. J., 1991 MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr. 24:946.
Lim, F., Morris, C. P., Occhiodoro, F. and Wallace, J.C., 1988 Sequence and domain structure of yeast pyruvate carboxylase, J. Biol. Chem. 263:11493.
Mattevi, A., Obmolova, G., Schulze, E., Kalk, K. H., Westphal, A., de Kok, A. and Hol, W. G. J., 1992 Atomic structure of the cubic core of the pyruvate dehydrogenase multienzyme complex, Science 255:1544.
Packman, L. C., Perham, R. N. and Roberts, G. C. K., 1984 Domain structure and 1H-n.m.r. spectroscopy of the pyruvate dehydrogenase complex of Bacillus stearothermophilus, Biochem. J. 217:219.
Patel, M. S. and Roche, T. E., 1990 Molecular biology and biochemistry of pyruvate dehydrogenase complexes, FASEB J. 4:3224.
Perham, R. N., 1991 Domains, motifs and linkers in 2-oxo acid dehydrogenase multienzyme complexes: a paradigm in the design of a multifunctional protein, Biochemistry 30:8501.
Reed, L. J. and Hackert, M. L., 1990 Structure-function relationships in dihydrolipoamide acyltransferases, J. Biol. Chem. 265:8971.
Robien, M. A., Clore, G. M., Omichinski, J. G., Perham, R. N., Appella, E., Sakaguchi, K. and Gronenborn, A., 1992 Three-dimensional solution structure of the E3-binding domain of the dihydrolipo amide succinyltransferase core from the 2-oxoglutarate dehydrogenase multienzyme complex of Escherichia coli, Biochemistry 31:3463.
Russell, G. C and Guest, J. R., 1991 Sequence similarity within the family of dihydrolipoamide acyltransferases and discovery of a previously unidentified fungal enzyme, Biochim. Biophys. Acta 1076:225.
Samols, D., Thornton, C. G., Murtif, V. L., Kumar, G. K., Haase, F. C. and Wood, H. G., 1988 Evolutionary conservation among biotin enzymes, J. Biol. Chem. 263:6461.
Sieker, L., Cohen-Addad, C., Neuberger, M. and Douce, R., 1991 Crystallographic data for H-protein from the glycine decarboxylase complex, J. Mol. Biol. 220:223.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1993 Springer Science+Business Media New York
About this chapter
Cite this chapter
Perham, R.N., Wallis, N.G., Brocklehurst, S.M., Dardel, F., Davis, A.L., Laue, E.D. (1993). Structure and Post-Translational Modification of the Lipoyl Domain of 2-Oxo Acid Dehydrogenase Complexes: A New Family of Protein Domains. In: Imahori, K., Sakiyama, F. (eds) Methods in Protein Sequence Analysis. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-1603-7_37
Download citation
DOI: https://doi.org/10.1007/978-1-4899-1603-7_37
Publisher Name: Springer, Boston, MA
Print ISBN: 978-1-4899-1605-1
Online ISBN: 978-1-4899-1603-7
eBook Packages: Springer Book Archive