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DNA-Protein Interactions and Protein-Protein Interactions in Filamentous Bacteriophage Assembly

Implications for Epitope Display

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Abstract

The virion of the filamentous bacteriophage fd (fl and M13 are very similar strains) is a flexible rod about 1 μm long and 6 nm in diameter, comprising a tubular sheath of approx. 2700 copies of the major coat protein subunit surrounding a DNA core. The DNA is a single-stranded circular molecule of 6408 nucleotides embodying 10 genes; these genes are tightly packed and, in some instances, overlapping, apart from a short region (the intergenic space) which encodes no protein component but which contains a double-stranded helical hairpin loop responsible for initiating assembly of the virion. There are a few copies (about 5) of each of two minor coat proteins at the two ends of the virion: gVIIp and gIXp at the end where assembly is initiated, and glllp and gVIp at the end where the process is terminated [for general reviews, see Model & Russe1,1988; Russel, 1991)].

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References

  • Cesareni, G., 1992, Peptide display on filamentous phage capsids. A new powerful tool to study protein-ligand interactions, FEBS Lett. 307: 66–70.

    Article  PubMed  CAS  Google Scholar 

  • Colnago, L.A., Valentine, K.G., and Opella, S.J., 1987, Dynamics of fd coat protein in the bacteriophage, Biochemistry 26: 847–854.

    Article  PubMed  CAS  Google Scholar 

  • Corey, D.R., Shiau, A.K., Yang, Q., Janowski, B.A., and Craik, C.S., 1993, Trypsin display on the surface of bacteriophage, Gene 128: 129–134.

    Article  PubMed  CAS  Google Scholar 

  • de la Cruz, V., Lal, A., and McCutchan, T., 1988, Immunogenicity and epitope mapping of foreign sequences via genetically engineered filamentous phage, J. Biol. Chem. 263: 4318–4322.

    PubMed  Google Scholar 

  • Felici. F., Castagnoli, L., Musacchio, A., Jappelli, R., and Cesareni, G., 1991, Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector, J.Mo1.Biol. 222: 301–310.

    Google Scholar 

  • Felici, F., Luzzago, A., Folgori, A., and Cortese, R., 1993, Mimicking of discontinuous epitopes by phage-displayed peptides, II. Selection of clones recognized by a protective monoclonal antibody against the Bortadella pertussisi toxin from phage peptide libraries, Gene 128: 21–27.

    Article  PubMed  CAS  Google Scholar 

  • Glucksman, M.J., Bhattacharjee, S., and Makowski, L., 1992, Three-dimensional structure of a cloning vector. X-ray diffraction studies of filamentous bacteriophage M13 at 7 A resolution, J. Mol. Biol. 226: 455–470.

    Article  PubMed  CAS  Google Scholar 

  • Greenwood, J., Hunter, G. J., and Perham, R. N., 1991a, Regulation of filamentous bacteriophage length by modification of electrostatic interactions between coat protein and DNA, J. Mol. Biol. 217: 223–227.

    Article  PubMed  CAS  Google Scholar 

  • Greenwood, J., Willis, A.E., and Perham, R.N., 199 lb, Multiple display of foreign peptides on a filamentous bacteriophage. Peptides from Plasmodium falciparum sporozoite protein as antigens, J.Mol.Biol. 220: 821–827.

    Google Scholar 

  • Hunter, G.J., Rowitch, D.H., and Perham, R.N., 1987, Interactions between DNA and coat protein in the structure and assembly of filamentous bacteriophage fd, Nature 327: 252–254.

    Article  PubMed  CAS  Google Scholar 

  • Huse, W.D., Stinchcombe, T.J., Glaser, S.M., Starr, L., MacLean, M., Hellström, K.E., Hellström, I., and Yelton, D.E., 1992, Application of a filamentous phage pVIII fusion protein system suitable for efficient production, screening, and mutagenesis of F(ab) antibody fragments, J. Immunol. 149: 3914–3920.

    PubMed  CAS  Google Scholar 

  • Il’ichev, A.A., Minenkova, O.O., Tat’kov, S.I., Karpyshev, N.N., Eroshkin, A.M., Petrenko, V.A., and Sandakhchiev, L.S., 1989, M13 filamentous bacteriophage in protein engineering, Doklady Akademii Nauk. SSSR. 307: 431–433.

    Google Scholar 

  • Kang, A.S., Barbas, C.F., Janda, K.D., Benkovic, S.J., and Lerner, R.A., 1991, Linkage of recognition and replication functions by assembling combinatorial antibody Fab libraries along phage surfaces, Proc. Natl. Acad. Sci. U.S.A. 88: 4363–4366.

    Article  PubMed  CAS  Google Scholar 

  • Makowski, L., 1993, Structural constraints on the display of foreign peptides on filamentous bacteriophages, Gene 128: 5–11.

    Article  PubMed  CAS  Google Scholar 

  • Marvin, D. A., 1978, Structure of the filamentous phage virion. In The Single-stranded DNA Phages. ( Denhardt, D. T., Dressler, D & Ray, D. S., eds), pp. 583–603, Cold Spring Harbor Press, Cold Spring Harbor, New York.

    Google Scholar 

  • Marvin, D.A., Hale, R.D., Nave, C., and Citterich, M.H., 1994, Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages, J. Mol. Biol. 235: 260–286.

    Article  PubMed  CAS  Google Scholar 

  • Minenkova, O.O., Ilyichev, A.A., Kishchenko, G.P., and Petrenko, V.A., 1993, Design of specific immunogens using filamentous phage as the carrier, Gene 128: 85–88.

    Article  PubMed  CAS  Google Scholar 

  • Model, P. and Russel, M., 1988, Filamentous bacteriophage. In The Bacteriophages ( Calendar, R. ed.) vol. 2, pp. 375–456, Plenum Press, New York

    Chapter  Google Scholar 

  • Molina-Garcia, A. D., Harding, S. E., Diaz, F. G., de la Torre, J.-G., Rowitch, D., and Perham, R. N., 1992, Effect of coat protein mutations in bacteriophage fd studied by sedimentation analysis, Biophys. J. 63: 1293–1298.

    Article  PubMed  CAS  Google Scholar 

  • Nave, C., Brown, R. S., Fowler, A. G., Ladner, J. E., Marvin, D. A., Provencher, S. W., Tsugita, A., Armstrong, J., and Perham, R. N., 1981, Pfl filamentous bacterial virus. X-ray fibre diffraction analysis of two heavy-atom derivatives, J. Mol. Biol. 149, 675–707.

    Article  PubMed  CAS  Google Scholar 

  • Rowitch, D. H., Hunter, G. J., and Perham, R. N., 1988, Variable electrostatic interaction between DNA and coat protein in filamentous bacteriophage assembly. J. Mol. Biol. 204: 663–674.

    Article  PubMed  CAS  Google Scholar 

  • Russel, M.,1991, Filamentous phage assembly, Mol. Microbiol. 5: 1607–1613.

    Google Scholar 

  • Scott, J.K., 1992, Discovering peptide ligands using epitope libraries, Trends Biochem.Sci. 17: 241–245.

    Article  PubMed  CAS  Google Scholar 

  • Smith, G.P., 1985, Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface, Science 228: 1315–1317.

    Article  PubMed  CAS  Google Scholar 

  • Smith, G.P., 1993, Surface display and peptide libraries, Gene 128: 1–2.

    Article  Google Scholar 

  • Symmons, M.F., Welsh, L.C., Nave, C., Marvin, D.A., and Perham, R.N., 1995, Matching electrostatic charge between DNA and coat protein in filamentous bacteriophage. Fibre diffraction of charge-deletion mutants, J. Mol. Biol. 245: 86–91.

    Article  PubMed  CAS  Google Scholar 

  • Veronese, F. Di Marzo, Willis, A.E., Boyer-Thompson, C., Appella, E., and Perham, R.N., 1994, Structural mimicry and enhanced immunogenicity of peptide epitopes displayed on filamentous bacteriophage. The V3 loop of HIV-1 gp120. J. Mol. Biol., 243, 167–172.

    Article  CAS  Google Scholar 

  • Wachtel, E. J., Wiseman, R. L., Pigram, W. J., Marvin, D. A., and Manuelidis, L., 1974, Filamentous bacterial viruses. XIII. Molecular structure of the virion in projection. J. Mol. Biol. 88, 601–618.

    Article  PubMed  CAS  Google Scholar 

  • Willis, A.E., Perham, R.N., and Wraith, D., 1993, Immunological properties of foreign peptides in multiple display on a filamentous bacteriophage, Gene 128: 79–83.

    Article  PubMed  CAS  Google Scholar 

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Perham, R.N., Marvin, D.A., Symmons, M.F., Welsh, L.C., Terry, T.D. (1995). DNA-Protein Interactions and Protein-Protein Interactions in Filamentous Bacteriophage Assembly. In: Atassi, M.Z., Appella, E. (eds) Methods in Protein Structure Analysis. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-1031-8_30

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  • DOI: https://doi.org/10.1007/978-1-4899-1031-8_30

  • Publisher Name: Springer, Boston, MA

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