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Cloning of Novel Genes from the Human Spinal Cord by Molecular Profiling

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Catecholamine Research

Part of the book series: Advances in Behavioral Biology ((ABBI,volume 53))

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Abstract

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease which etiology is unknown. In ALS, large motoneurons in the brain stem and the anterior horn of the spinal cord degenerate selectively and progressively. To uncover the pathogenic mechanism of ALS, it is crucial to identify molecules maintaining motor neuronal integrity or leading to eventual cell death. To this aim, it is necessary to explore the molecules expressed in the spinal cord, and to analyze its function and the interaction they have. Several high throughput methods have been developed to screen many gene expression simultaneously, such as differential displays and cDNA microarrays. Molecular indexing is a method developed by Kato1 to explore the wide range of expressed genes effectively and enables comparison of profiles of gene expression among two or more samples. In the previous study, we have got 70 genes differentially expressed in autopsied Alzheimer’s disease brain compared with normal brain2. In this study, we screened genes expressed in the human spinal cord anterior horn by molecular indexing. Using this technique, we cloned two novel genes, FI58G and FI39A.

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References

  1. K. Kato, Description of the entire mRNA population by a 3’ end cDNA fragment generated by class US restriction enzymes, Nucleic Acids Res. 23, 3685–3690 (1995).

    Article  PubMed  CAS  Google Scholar 

  2. M. Doyu, K. Sawada, N. Mitsuma, J. Niwa, M. Yoshimoto, Y. Fujii, G. Sobue, and K. Kato, Gene expression profile in Alzheimer’s brain screened by molecular indexing, Brain Res. Mol. Brain Res. 87,1–11 (2001).

    Article  PubMed  CAS  Google Scholar 

  3. U. Strähle, P. Blader, J. Adam, and P.W. Ingham, A simple and efficient procedure for non-isotopic in situ hybridization to sectioned material, Trends Genet. 10, 69–108 (1994).

    Article  Google Scholar 

  4. S. Ishigaki, J. Niwa, T. Yoshihara, N. Mitsuma, M. Doyu, and G. Sobue, Two novel genes, human neugrin and mouse m-neugrin, are upregulated with neuronal differentiation in neuroblastoma cells, Biochem. Biophys. Res. Commun. 279, 526–533 (2000).

    Article  PubMed  CAS  Google Scholar 

  5. J. Niwa, S. Ishigaki, M. Doyu, T. Suzuki, K. Tanaka, and G. Sobue, A novel centrosomal ring-finger protein, dorfin, mediates ubiquitin ligase activity, Biochem. Biophys. Res. Commun. 281, 706–713 (2001).

    Article  PubMed  CAS  Google Scholar 

  6. E. Morett, and P. Bork, A novel transactivation domain in parkin, Trends Biochem. Sci. 24, 229–231 (1999).

    Article  PubMed  CAS  Google Scholar 

  7. T.P. Moynihan, H.C. Ardley, U. Nuber, S.A. Rose, P.F. Jones, A.F. Markham, M. Scheffher, and P.A. Robinson, The ubiquitin-conjugating enzymes UbcH7 and UbcH8 interact with RING finger/IBR motif- containing domains of HHARI and H7-AP1, J. Biol. Chem. 274, 30963–30968 (1999)

    Article  PubMed  CAS  Google Scholar 

  8. H. Shimura, N. Hattori, S. Kubo, Y. Mizuno, S. Asakawa, S. Minoshima, N. Shimizu, K. Iwai, T. Chiba, K. Tanaka, and T. Suzuki, Familial Parkinson disease gene product, parkin, is a ubiquitin-protein ligase, Nat. Genet. 25, 302–305 (2000).

    Article  PubMed  CAS  Google Scholar 

  9. Z. Feng, and A.G. Porter, NF-kappaB/Rel proteins are required for neuronal differentiation of SH-SY5Y neuroblastoma cells, J. Biol. Chem. 274, 30341–30344 (1999).

    Article  PubMed  CAS  Google Scholar 

  10. M. Hanada, S. Krajewski, S. Tanaka, D. Cazals-Hatem, B.A. Spengler, R.A. Ross, J.L. Biedler, and J.C. Reed, Regulation of Bcl-2 oncoprotein levels with differentiation of human neuroblastoma cells, Cancer Res. 53, 4978–4986 (1993).

    PubMed  CAS  Google Scholar 

  11. J. Corcoran, and M. Maden, Nerve growth factor acts via retinoic acid synthesis to stimulate neurite outgrowth, Nat Neurosci. 2, 307–308 (1999).

    Article  PubMed  CAS  Google Scholar 

  12. G. Fenteany, and S.L. Schreiber, Lactacystin, proteasome function, and cell fate, J. Biol. Chem. 273, 8545–8548(1998).

    Article  PubMed  CAS  Google Scholar 

  13. M. Obin, E. Mesco, X. Gong, A.L. Haas, J. Joseph, and A. Taylor, Neurite outgrowth in PC12 cells. Distinguishing the roles of ubiquitylation and ubiquitin-dependent proteolysis, J. Biol. Chem. 274, 11789–11795 (1999).

    Article  PubMed  CAS  Google Scholar 

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© 2002 Springer Science+Business Media New York

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Niwa, Ji., Ishigaki, S., Doyu, M., Sobue, G. (2002). Cloning of Novel Genes from the Human Spinal Cord by Molecular Profiling. In: Nagatsu, T., Nabeshima, T., McCarty, R., Goldstein, D.S. (eds) Catecholamine Research. Advances in Behavioral Biology, vol 53. Springer, Boston, MA. https://doi.org/10.1007/978-1-4757-3538-3_123

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  • DOI: https://doi.org/10.1007/978-1-4757-3538-3_123

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4419-3388-1

  • Online ISBN: 978-1-4757-3538-3

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