Abstract
In this chapter we present an updated revision of the mathematical interpretation leading to further development of the theory and practice associated with quantum similarity measures (QSM) [1–40]. The role of QSM can be resumed on their ability to be the vehicle producing discrete ndimensional mathematical representations of molecular structures. This property transforms QSM into a general source of unbiased molecular descriptors. QSM descriptors are general indeed, because of their quantum chemical origin: They can be computed, in principle, for any quantum system or any molecular structure possessing arbitrary geometrical conformation or state. Moreover, QSM descriptors are unbiased, because their values are not chosen by a priori designs: They are built up as a consequence of the theoretical quantum framework results and only depend on the nature and topological characteristics of the studied molecular set.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsPreview
Unable to display preview. Download preview PDF.
References
R. Carbó, M. Arnau, and L. Leyda, Int. J. Quantum Chem. 17, 1185 (1980).
E. E. Hodgkin and W. G. Richards, Int. J. Quantum Chem. 14, 105 (1987).
C. Burt, W. G. Richards, and P. Huxley, J. Comput. Chem. 11, 1139 (1990).
A. C. Good, E. E. Hodgkin, and W. G. Richards, J. Chem. Inf. Comput. Sci. 32, 188 (1992).
A. C. Good, S.-S. So, and W. G. Richards, J. Med. Chem. 36, 433 (1993).
C. Good and W. G. Richards, J. Chem. Inf. Comput. Sci. 33, 112 (1993).
D. L. Cooper and N. L. Allan, J. Comput.-Aided Mol. Des. 3, 253 (1989).
D. L. Cooper and N. L. Allan, J. Am. Chem. Soc. 114, 4773 (1992).
D. L. Cooper, K. A. Mort, N. L. Allan, D. Kinchington, and C. McGuidan, J. Am. Chem Soc. 115, 12615 (1993).
N. L. Allan and D. L. Cooper, Top. Curr. Chem. 173, 85 (1995).
J. Cioslowski and E. D. Fleishmann, J. Am. Chem. Soc. 113, 64 (1991).
J. B. Ortiz and J. Cioslowski, Chem. Phys. Lett. 185, 270 (1991).
J. Cioslowski and M. Challacombe, Int. J. Quantum Chem. S25, 81 (1991).
J. Cioslowski and S. T. Mixon, Can. J. Chem. 70, 443 (1992).
J. Cioslowski and A. Nanayakkara, J. Am. Chem. Soc. 115, 1213 (1993).
J. Cioslowski, B. B. Stefanov, and P. Constans, J. Comput. Chem. 17, 1352 (1996).
R. Ponec and M. Strnad, Collect. Czech. Chem. Commun. 55, 896 (1990).
R. Ponec and M. Strnad, Collect. Czech. Chem. Commun. 55, 2583 (1990).
R. Ponec and M. Strnad, J. Phys. Org. Chem. 4, 701 (1991).
R. Ponec and M. Strnad, J. Math. Chem. 8, 103 (1991).
R. Ponec and M. Strnad, Int. J. Quantum Chem. 42, 501 (1992).
R. Ponec, J. Chem. Inf. Comput. Sci. 33, 805 (1993).
R. Ponec, Overlap Determinant Method in the Theory of Pericyclic Reactions, Lecture notes in Chemistry 65, Springer-Verlag, Berlin (1995).
P. G. Mezey, Shape in Chemistry: An Introduction to Molecular Shape and Topology, VCH, New York (1993).
P. G. Mezey, Top. Curr. Chem. 173, 63 (1995).
C. Lee and S. Smithline, J. Phys. Chem. 98, 1135 (1994).
C. Amovilli and R. McWeeny, J. Mol. Struct. (Theochem) 227, 1 (1991).
A. C. Good, J. Mol. Graph. 10, 144 (1992).
R. Benigni, M. Cotta-Ramusino, F. Giorgi, and G. Gallo, J. Med. Chem. 38, 629 (1995)
J. D. Petke, J. Comput. Chem. 14, 928 (1993).
A. Riera, J. Mol. Struct. (Theochem) 259, 83 (1992).
F. Fratev, O. E. Polansky, A. Mehlhorn, and V. Monev, J. Mol. Struct. 56, 245 (1979).
F. Fratev, V. Monev, A. Mehlhorn, and O. E. Polansky, J. Mol. Struct. (Theochem) 56, 255 (1979).
M. A. Johnson and G. Maggiora (eds.), Concepts and Applications of Molecular Similarity, John Wiley, New York (1990).
R. Carbó (ed.) Molecular Similarity and Reactivity: From Quantum Chemical to Phenomenological Approaches, Kluwer, Dordrecht (1995).
K. Sen (ed.), Molecular Similarity. Top. Curr. Chem. Vols. 173 and 174, SpringerVerlag, Berlin (1995).
P. M. Dean (ed.), Molecular Similarity in Drug Design, Blackie Academic & Professional, London (1995).
R. Carbó-Dorca and P. G. Mezey (eds.), Advances in Molecular Similarity, Vol. 1, JAI Press, Greenwich (1996).
R. Carbó-Dorca and P. G. Mezey (eds.), Advances in Molecular Similarity, Vol. 2, JAI Press, Greenwich (1998).
R. Carbó and L. Domingo, lnt. J. Quantum Chem. 23, 517 (1987).
R. Carbó-Dorca, J. Math. Chem. 23, 353 (1998).
R. Carbó-Dorca, J. Math. Chem. 23, 365 (1998).
R. Carbó-Dorca, in Advances in Molecular Similarity, Vol. 2, R. Carbó-Dorca and P. G. Mezey (eds.), JAI Press, Greenwich (1998).
R. Carbó-Dorca and E. Besalú, J. Mol. Struct. (Theochem) 451, 11 (1998).
R. Carbó and B. Calabuig, Comput. Phys. Commun. 55, 117 (1989).
R. Carbó and B. Calabuig, J. Mol. Struct. (Theochem) 254, 517 (1992).
R. Carbó and B. Calabuig, in Computational Chemistry: Structure, Interactions and Reactivity, Vol. A., S. Fraga (ed.) Elsevier, Amsterdam (1992).
R. Carbó, B. Calabuig, L. Vera, and E. Besalú, Adv. Quantum Chem. 25, 253 (1994).
R. Carbó and B. Calabuig, Int. J. Quantum Chem. 42, 1681 (1992).
R. Carbó and E. Besalú, in Molecular Similarity and Reactivity: From Quantum Chemistry to Phenomenological Approaches, R. Carbó (ed.) Kluwer, Dordrecht (1995).
R. Carbó and B. Calabuig, J. Chem. lnf. Comput. Sci. 32, 600 (1992).
R. Carbó-Dorca, E. Besalú, L. Amat, and X. Fradera, in Advances in Molecular Similarity, Vol. 1, R. Carbó-Dorca and P. G. Mezey (eds.) JAI Press, Greenwich (1996).
D. Robert and R. Carbó-Dorca, J. Math. Chem. 23, 327 (1998).
D. Robert and R. Carbó-Dorca, Nuovo Cimento A 111, 1311 (1998).
R. Carbó, E. Besalú, L. Amat, and X. Fradera, J. Math. Chem. 18, 237 (1995).
X. Fradera, L. Amat, E. Besalú, and R. Carbó-Dorca, Quant. Struct. -Act. Relat. 16, 25 (1997).
M. Lobato, L. Amat, E. Besalú, and R. Carbó-Dorca, Scientia Gerundensis 23, 17 (1998).
M. Lobato, L. Amat, E. Besalú, and R. Carbó-Dorca, Quant. Struct.-Act. Relat. 16, 465 (1997).
D. Robert and R. Carbó-Dorca, J. Chem. Inf. Comput. Sci. 38, 620 (1998).
L. Amat, D. Robert, E. Besalú, and R. Carbó-Dorca, J. Chem. Inf. Comput. Sci. 38, 624 (1998).
D. Robert, L. Amat, and R. Carbó-Dorca, J. Chem. lnf. Comput. Sci. 39, 333 (1999).
R. Ponec, L. Amat, and R. Carbó-Dorca, J. Comput-Aided Mol. Des. 13, 259 (1999).
L. Amat, R. Carbó-Dorca, and R. Ponec, J. Comput. Chem. 19, 1575 (1998).
R. Ponec, L. Amat, and R. Carbó-Dorca, J. Phys. Org. Chem. 12, 447 (1999).
P. G. Mezey, R. Ponec, L. Amat, and R. Carbó-Dorca, Enantiomer 4, 371 (1999).
L. Amat, R. Carbó-Dorca, and R. Ponec, J. Med. Chem. 42, 5169 (1999).
D. Robert, X. Gironés, and R. Carbó-Dorca, J. Comput. -Aided Mol. Des. 13, 597 (1999).
X. Gironés, L. Amat, and R. Carbó-Dorca, R., SAR QSAR Environ. Res. 10, 545 (1999).
D. Robert and R. Carbó-Dorca, SAR QSAR Environ. Res. 10, 401 (1999).
C. Hansch, B. H. Venger, and A. Panthananickal, J. Med. Chem. 23, 459 (1980).
S. E. Sherman and S. J. Lippard, Chem. Rev. 87, 1153 (1987).
M. J. Frisch, G. W. Trucks, H. B. Schlegel, P. M. W. Gill, et al. Gaussian-94, (Revision E.2), Gaussian, Inc., Pittsburgh (1995).
E. Besalú, R. Carbó, J. Mestres, and M. Solà, Top. Curr. Chem. 173, 31 (1995).
R. Carbó and E. Besalú, J. Math. Chem. 20, 247 (1996).
R. Carbó, E. Besalú, L. Amat, and X. Fradera, J. Math. Chem. 19, 47 (1996).
D. Robert and R. Carbó-Dorca, J. Chem. Inf. Comput. Sci. 38, 469 (1998).
P. Constans, L. Amat, and R. Carbó-Dorca, J. Comput. Chem. 18, 826 (1997).
R. Carbó-Dorca, L. Amat, E. Besald, and M. Lobato, in Advances in Molecular Similarity, Vol. 2, R. Carbó-Dorca and P. G. Mezey (eds.), JAI Press, Greenwich (1998).
L. A. Zadeh, Inform. Control 8, 338 (1965).
E. Trillas, C. Alsina, and J. M. Terricabras, Introducción a la Lógica Difusa, Ariel Matemática, Barcelona (1995).
R. Carbó-Dorca, J. Math. Chem. 22, 143 (1997).
R. Carbó-Dorca, E. Besalú, and X. Gironés, Extended Density Functions and Quantum Chemistry, Technical Report: IT-IQC-99–02. Adv. Quantum Chem. in press.
J. S. Bell, Speakable and Unspeakable in Quantum Mechanics, Cambridge University Press, Cambridge (1993).
T. M. Vinigradov (ed.) Encyclopaedia of Mathematics, Vol. 8, Reidel-Kluwer, Dordrecht (1987).
J. von Neumann, Mathematical Foundations of Quantum Mechanics, Princeton University Press, Princeton (1955).
D. Bohm, Quantum Theory, Dover, New York (1989).
S. Goldstein, Physics Today, March, 42 (1988) and April, 38 (1988).
P. O. Löwdin, Phys. Rev. 97, 1474 (1955).
R. McWeeny, Revs. Mod. Phys. 32, 335 (1960).
R. McWeeny, Proc. Roy. Soc. A 253, 242 (1959).
E. R. Davidson, Reduced Density Matrices in Quantum Chemistry, Academic Press, New York (1976).
J. Mestres, M. Solà, M. Duran, and R. Carbó, J. Comput. Chem. 15, 1113 (1994).
P. Constans and R. Carbó, J. Chem. Inf. Comput. Sci. 35, 1046 (1995).
P. Constans, L. Amat, X. Fradera, and R. Carbó-Dorca, in Advances in Molecular Similarity, Vol. 1, R. Carbó-Dorca and P. G. Mezey (eds.), JAI Press, Greenwich (1996).
L. Amat, X. Fradera, and R. Carbó, Scientia Gerundensis 22, 97 (1996).
L. Amat and R. Carbó-Dorca, J. Comput. Chem. 18, 2023 (1997).
L. Amat and R. Carbó-Dorca, J. Comput. Chem. 20, 911 (1999).
E. V. Ludeña, in Química Teórica, Nuevas Tendencias, Vol. 4, S. Fraga (ed.), CSIC, Madrid (1987).
I. Shavitt, in Methods of Electronic Structure Theory, Modern Theoretical Chemistry, Vol. 3, H. F. Schaefer III (ed.), Plenum Press, New York (1977).
A. Lichnerowicz, Algèbre et Analyse Linéaires, Masson & Cie. Éditeurs, Paris (1947).
C. G. J. Jacobi, J. Reine Angew. Math. 30, 51 (1846).
R. Carbó and E. Besalú, in Strategies and Applications in Quantum Mechanics, Y. Ellinger and M. Defranceschi (eds.), Kluwer, Dordrecht (1996).
R. Carbb and E. Besalú, J. Math. Chem. 18, 37 (1995).
R. Carbó and E. Besalú, Comput. Chem. 18, 117 (1994).
R. Carbó and E. Besalú, J. Math. Chem. 13, 331 (1993).
P. Hohenberg and W. Kohn, Phys. Rev. B136, 864 (1964).
K. D. Sen, E. Besalú, and R. Carbó-Dorca, J. Math. Chem. 25, 253 (1999).
P. G. Mezey, J. Math. Chem. 23, 65 (1998).
S. K. Berberian, Introducción al Espacio de Hilbert, Teide, Barcelona (1970).
A. Jeffrey, Handbook of Mathematical Formulas and Integrals, Academic Press, New York (1995).
R. E. Moss, Advanced Molecular Quantum Mechanics, Chapman & Hall, London (1973).
W. Greiner, Relativistic Quantum Mechanics, Springer-Verlag, Berlin (1997).
R. Dedekind, Essays on the Theory of Numbers, Dover, New York (1963).
R. Carbó, B. Calabuig, E. Besalú and A. Martínez, Molecular Engineering 2, 43 (1992).
R. G. Parr, The Quantum Theory of Molecular Electronic Structure, W. A. Benjamin Inc., New York (1963).
R. Carbó and J. M. Riera, A general SCF Theory, Lecture Notes in Chemistry, Vol. 5, Springer-Verlag, Berlin (1978).
T. Akutsu, IEICE Trans. Inf. Sys. E-75D, 95 (1992).
T. Akutsu, IEICE Trans. Fund. Elec. Com. Comput. Sci. E-76A, 9(1993).
T. Asano, Theo. Comput. Sci. 38, 249 (1985).
D.J. Klein, J. Chem. Inf. Comput. Sci. 37, 656 (1997).
I.T. Jolliffe, Principal Component Analysis, Springer, New York (1986).
S. Wold, E. Johansson, and M. Cocchi, in 3D QSAR in Drug Design, H. Kubinyi (ed.), ESCOM, Leiden (1993).
S. Wold, in Chemometric Methods in Molecular Design, H. van de Waterbeemd (ed.), VCH, Weinheim (1995).
I. Borg and P. Groenen, Modern Multidimensional Scaling, Springer, New York (1997).
C.M. Cuadras and C. Arenas, Commun. Statist. Theor. Meth. 19, 2261 (1990).
D.M. Allen, Technometrics 16, 125 (1974).
S. Wold and L. Ericksson, in Chemometric Methods in Molecular Design, H. van de Waterbeemd (ed.), VCH, New York (1995).
L. Amnat, P. Constans, E. Besalú, and R. Carbó, MOLSIMIL 97, Institute of Computational Chemistry, University of Girona (1997).
L. Amat, D. Robert, and E. Besalú, TQSAR-SIM, Institute of Computational Chemistry, University of Girona (1997).
K. Yutani, K. Ogasahara, T. Tsujita, K. Kanemoto, et al.,J. Biol. Chem. 262, 13429 (1987).
K. Yutani, K. Ogasahara, K. Aoki, T. Kakuno, and Y. Sugino, J. Biol. Chem. 259, 14076 (1984).
K. Yutani, K. Ogasahara, and Y. Sugino, Adv. Biophys. 20, 13 (1985).
K. Yutani, K. Ogasahara, T. Tsujita, and Y. Sugino, Proc. Natl. Acad. Sci. USA 84, 4441 (1987).
J. Damborský, Prot. Eng. 11, 21 (1998).
PC Spartan Plus, Wavefunction Inc., Irvine CA, 92612 USA.
O. Exner, Correlation Analysis of Chemical Data, Plenum Press, New York (1988).
Y. Nozaki and C. Tanford, J. Theor. Biol. 67, 567 (1971).
M. R. Sweet and D. Eisenberg, J. Mol. Biol. 171, 479 (1983).
S. Rackovsky and H. A. Scheraga, Proc. Natl. Acad. Sci. USA 74, 5248 (1977).
R. D. Cramer III, D. E. Patterson, and J. D. Bunce, J. Am. Chem. Soc. 110, 5959 (1988).
R. F. Rekker, in Pharmacochemistry Library, W. T. Nauta and R. F. Rekker (eds.), Elsevier, New York (1977).
E. Urrestarazu, W. H. J. Vaes, H. J. M. Verhaar, and J. L. M. Hermens, J. Chem. Inf. Comput. Sci. 38, 845 (1998).
S. Karabunarliev, O. G. Mekenyan, W. Karcher, C. L. Russom, and S. P. Bradbury, Quant. Struct.-Act. Relat. 15, 311 (1996).
L. H. Hall, L. B. Kier, and G. Phipps, Environ. Toxicol. Chem. 3, 355 (1984).
B. D. Gute and S. C. Basak, SAR QSAR Environ. Res. 7, 117 (1997).
D. L. Geiger, L. T. Brooke, and D. J. Call (eds.) Acute toxicities of Organic Chemicals to Fathead Minnows (Pimephales promelas), Vol. 5, Center for Lake Environmental Studies, University of Wisconsin-Superior, Superior (1990).
M. J. S. Dewar, E. G. Zoebisch, E. F. Healy, and J. J. P. Stewart, J. Am. Chem. Soc. 107, 3902 (1985).
AMPAC 6.0, 1994 Semichem, 7128 Summit, Shawnee, KS 66216 D.A.
H.J. M. Verhaar, C. J. van Leeuwen, and J. L. M. Hermens, Chemosphere 25, 471 (1992).
P.G. Mezey, Molec. Phys. 96, 169 (1999).
N. S. E. Sargent, D. G. Upshall, and J. W. Bridges, Biochem. Pharmac. 31, 1309 (1982).
R. W. Taft, J. Am. Chem. Soc. 86, 5175 (1968).
L. P. Hammett, J. Am. Chem. Soc. 59, 96 (1937).
A. Streitweiser, Molecular Orbital Theory for Organic Chemists, Wiley, New York (1961).
A. K. Saxena, Quant. Struct. -Act. Relat. 14, 142 (1995).
M. Randic, J. Am. Chem. Soc. 97, 6609 (1975).
L. B. Kier, W. J. Murray, M. Randic, and L. M. Hall, J. Pharm. Sci. 65, 1226 (1976).
C.K. Chu, R. F. Schinazi, M. K. Ahn, G. V. Ullas, and Z. P. Gu, J. Med Chem. 32, 612 (1989).
A. T. Balaban, J. Chem. Inf. Comput. Sci. 35, 339 (1995).
M. Randic, B. Jerman-Blacic, and N. Trinajstic, Comput. Chem. 14, 237 (1990).
Z. Mihalic and N. Trinajstic, J. Chem. Educ. 69, 701 (1992).
M. Wagener, J. Sadowski, and J. Gasteiger, J. Am. Chem. Soc. 117, 7769 (1995).
http://iqc.udg.es/cat/similarity/QSAR/steroids.htm.
H. Hosoya, Bull. Chem. Soc. Jap. 45, 2332 (1971).
H. Hosoya, Bull. Chem. Soc. Jap. 45, 3415 (1971).
D. C. Montgomery and E. A. Peck, Introduction to Linear Regression Analysis, Wiley, New York (1992).
B.D. Silverman and D. E. Platt, J. Med. Chem. 39, 2130 (1996).
D. A. Pierre, Optimization Theory with Applications, Wiley, New York (1969).
R. Carbó, L. Molino, and B. Calabuig, J. Comput. Chem. 13, 155 (1992).
M. R. Spiegel, Mathematical Handbook, McGraw-Hill, New York (1968).
J.S. Binkley, J. A. Pople, and W. J. Hehre, J. Am. Chem. Soc. 102, 939 (1980).
M. S. Gordon, J. S. Binkley, J. A. Pople, W. J. Pietro, and W. J. Hehre, J. Am. Chem. Soc. 104, 2797 (1982).
R. Carbó-Dorca, ATOMIC Program 1995, based on: B. Roos, C. Salez, A. Veillard, and E. Clementi, A General Program for Calculation of SCF Orbitals by the Expansion Method, IBM Research/RJ518(#10901) (1968).
ASA coefficients and exponents can be downloaded from: http://iqc.udg.es/cat/similarity/ASA/func6–21.html
R. Bonaccorsi, E. Scrocco, and T. Tomasi, J. Chem. Phys. 52, 5270 (1970).
H. E. Bethe and E. E. Salpeter, Quantum Mechanics of One- and Two-Electron Systems, Springer-Verlag, London (1957).
R. E. Moss, Advanced Molecular Quantum Mechanics, Chapman & Hall, London (1973).
R. McWeeny, Methods of Molecular Quantum Mechanics, Academic Press, London (1978).
J. Almlöf and O. Gropen, Revs. Comput. Chem. 8, 203 (1996).
M. D. Miller, R. P. Sheridan, and S. K. Kearsley, J. Med. Chem. 42, 1505 (1999).
G. Sello, J. Chem. Inf. Comput. Sci. 38, 691 (1998).
D. D. Robinson, P. D. Lyne, and W. G. Richards, J. Chem. Inf. Comput. Sci. 39, 594 (1999).
J. Mestres, D. C. Rohrer, and G. M. Maggiora, J. Comput. Chem. 18, 934 (1997).
J. A. Grant, M. A. Gallardo, and B. T. Pickup, J. Comput. Chem. 17, 1653 (1996).
M. J. Sippl and H. Stegbuchner, Comput. Chem. 15, 73 (1991).
P. K. Redington, Comput. Chem. 16, 217 (1992).
A. T. Brint and P. Willett, J. Chem. Inf. Comput. Sci. 27, 152 (1987).
P. A. Bath, A. R. Poirrette, P. Willett, and F. H. Allen, J. Chem. Inf. Comput. Sci. 34, 141 (1994).
D. J. Wild and P. Willett, J. Chem. Inf. Comput. Sci. 34, 224 (1994).
D. A. Thorner, D. J. Wild, P. Willett, and P. M. Wright, J. Chem. Inf. Comput. Sci. 36, 900 (1996).
S. Handschuh, J. Chem. Inf Comput. Sci. 38, 220 (1998).
G. Bravi, E. Gancia, P. Mascagni, M. Pegna, R. Todeschini, and A. Zalianni, J. ComputAided Mol. Des. 11, 79 (1997).
G. E. Kellogg, L. B. Kier, P. Gaillard, and L. H. Hall, J. Comput-Aided Mol. Des. 10, 513 (1996).
F. H. Allen, S. Bellard, M. D. Brice, B. A. Cartwright, et al., Acta Cryst. B35, 2331 (1979).
P. J. Artymiuk, P. A. Bath, H. M. Grindley, C. A. Pepperrell, et al., J. Chem. Inf. Comput. Sci. 32, 617 (1992).
R. Attias, J. Chem. Inf. Comput. Sci. 23, 102 (1983).
C. W. Crandell and D. H. Smith, J. Chem. Inf. Comput. Sci. 23, 186 (1983).
J. K. Cringean and M. F. Lynch, J. Inf. Sci. 15, 211 (1989).
A. J. Gushurst, J. G. Nourse, W. D. Houndshell, B. A. Leland, and D. G. Raich, J. Chem. Inf. Comput. Sci. 31, 447 (1991).
T. R. Hagadone, J. Chem. Inf. Comput. Sci. 32, 515 (1992).
E. M. Rasmussen, G. M. Downs, and P. Willett, J. Comput. Chem. 9, 378 (1988).
P. Willet, J. Chem. Inf. Comput. Sci. 25, 114 (1985).
P. Willet, J. Inf. Sci. 15, 223 (1989).
P. Willet, V. Winterman, and D. Bawden, J. Chem. Inf. Comput. Sci. 26, 36 (1983).
P. Willet, V. Winterman, and D. Bawden, J. Chem. Inf. Comput. Sci. 26, 109 (1983).
H. Zhang, M. Minoh, and K. Ikeda, J. Inf. Proc. 15, 108 (1992).
E. Garcia and L. M. Reyes, J. Mol. Struct. (Theochem) 101, 101 (1993).
P. Kuner and B. Ueberreiter, Int. J. Pat. Recog. Art. Intel. 2, 527 (1988).
E. Bienenstock and C. von der Malsburg, Europhys. Lett. 4, 4 (1987).
R. Sitaraman and A. Rosenfeld, Patt. Recog. 22, 331 (1989).
A. Tomlin (ed.), The Pesticide Manual: a World Compendium:Incorporating the Agrochemicals Handbook, Royal Society of Chemistry, London (1995).
B. Böhm, J. Stürzbecher, and G. Klebe, J. Med. Chem. 42, 458 (1999).
W. E. Lorensen and H. E. Cline, Comput. Graphics 21, 163 (1987).
A. Watt and M. Watt, Advanced Animation and Rendering Techniques, Addison-Wesley, Reading (1992).
Marching cubes algorithm Internet site: http://exaflop.org/docs/marchcubes
Marching cubes algorithm Internet site: http://panda.uchc.edu/htbit/indiv/software_docs/marching_cubes.html
A Fortran 90 procedure for the MCA can be downloaded from: http://iqc.udg.es/cat/similarity/ASA/mca.html
GiD, Geometry and Data, a pre/post processor graphical interface. Internet site: http://gatxan.upc.es. International Center for Numerical Methods in Engineering (CIMNE), Barcelona (1999).
X. Gironés, L. Amat, and R. Carbó-Dorca, J. Mol. Graph. Model. 16, 190 (1998).
I. M. Vinogradov (ed.) Encyclopaedia of Mathematics, Vol. 7, Reidel-Kluwer, Dordrecht (1987).
R. Carbó-Dorca and K. D. Sen, J. Mol. Struct. (Theochem), 501, 173 (2000).
C. Roos, T. Terlaky, and J.-P. Vial, Theory and Algorithms for Linear Optimization, Wiley, New York (1997).
I. M. Vinogradov (ed.) Encyclopaedia of Mathematics, Vol. 4, Kluwer, Dordrecht (1989).
LF 95 Language Reference, Lahey Computer Systems, Incline Village NV (1998). For more details browse at: http://www.lahey.com.
R. Carbci-Dorca, J. Math. Chem. 23, 365 (1998).
H. Eyring, J. Walter, and G. E. Kimball, Quantum Chemistry, Wiley, New York (1940).
L. Pauling and E. B. Wilson Jr., Introduction to Quantum Mechanics, Dover, New York (1985).
For a recent matrix formulation, see: E. Besalú and R. Carbó-Dorca, J. Math. Chem. 22, 85 (1997).
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2001 Springer Science+Business Media New York
About this chapter
Cite this chapter
Carbó-Dorca, R., Amat, L., Besalú, E., Gironés, X., Robert, D. (2001). Quantum Molecular Similarity: Theory and Applications to the Evaluation of Molecular Properties, Biological Activities and Toxicity. In: Carbó-Dorca, R., Gironés, X., Mezey, P.G. (eds) Fundamentals of Molecular Similarity. Mathematical and Computational Chemistry. Springer, Boston, MA. https://doi.org/10.1007/978-1-4757-3273-3_12
Download citation
DOI: https://doi.org/10.1007/978-1-4757-3273-3_12
Publisher Name: Springer, Boston, MA
Print ISBN: 978-1-4419-3344-7
Online ISBN: 978-1-4757-3273-3
eBook Packages: Springer Book Archive