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Sequencing of Mammalian Messenger RNA Using Oligonucleotide Primers: Application to Hypoxanthine Phosphoribosyltransferase and a Phosphoglycerate Kinase Variant

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Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 253A))

Abstract

We have investigated the suitability of applying primer directed dideoxynucleotide mediated sequencing methods to the characterization of low abundance messages. Direct mRNA sequence analysis is based on the priming of a target within a heterogeneous population of RNA by using oligonucleotide primers complimentary to the mRNA of interest. We have examined the minimal message abundance limits and mRNA amounts required for direct dideoxynucleotide RNA sequencing as a means of exploring the utility of this approach in characterizing point mutations.

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References

  1. D.J. Jolly, H. Okayama, P. Berg, A.C. Esty, D. Filpula, P. Bohlen, G.G. Johnson, J.E. Shively, T. Hunkapillar, and T. Friedmann, Isolation and characterization of a full-length expressible cDNA for human hypoxanthine phosphoribosyl-transferase, Proc. Natl. Acad. Sci. U.S.A. 80: 477 (1983).

    Article  PubMed  CAS  Google Scholar 

  2. A.M. Michelson, A.F. Markham, and S.H. Orkin, Isolation and DNA sequence of a full length cDNA clone for human X-chromosome-encoded phosphoglycerate kinase, Proc. Natl. Acad. Sci. U.S.A. 80: 472 (1983).

    Article  PubMed  CAS  Google Scholar 

  3. P.H. Hamylyn, M.J. Gait, and C. Milstein, Complete sequence of an immunoglobulin mRNA using specific priming and dideoxynucleotide method of RNA sequencing, Nucleic Acids Res. 15: 1067 (1981).

    Google Scholar 

  4. J. Geliebter, R.A. Zeff, R.W. Melvold, and S.G. Nathenson, Mitotic recombination in germ cells generated two major histocompatibility complex mutant genes shown to be identical by RNA sequence analysis: K (bm9) and K (bm6), Proc. Natl. Acad. Sci. U.S.A. 83: 3371 (1986).

    Article  PubMed  CAS  Google Scholar 

  5. J. Singer-Sam, R.L. Simmer, D.H. Keith, L. Shively, M. Teplitz, K. Itakura, S.M. Gartler, and A.D. Riggs, Isolation of a cDNA clone for human X-linked 3-phosphoglycerate kinase by use of a mixture of synthetic oligodeoxyribonucleotides as a detection probe, Proc. Natl. Acad. Sci. U.S.A. 80: 802 (1983).

    Article  PubMed  CAS  Google Scholar 

  6. D.W. Melton, D.S. Konecki, D.H. Ledbetter, J.F. Hejmanik, and C.T. Caskey, In vitro translation of hypoxanthine-guanine phosphoribosyltransferase mRNA: characterization of a mouse neuroblastoma cell line that has elevated levels of hypoxanthine-guanine phosphoribosyltransferase protein, Proc. Natl. Acad. Sci. U.S.A. 78: 6977 (1981).

    Article  PubMed  CAS  Google Scholar 

  7. R. Joshi and F.F. Snyder, in preparation.

    Google Scholar 

  8. H. Fujiia, S.-H. Chen, J. Akatsuka, S. Miwa, and A. Yoshida, Use of cultured lymphoblastoid cells for the study of abnormal enzymes: molecular abnormality of a phosphoglycerate kinase variant associated with hemolytic anemia, Proc. Natl. Acad. Sci. U.S.A. 78: 2587 (1981).

    Article  Google Scholar 

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© 1989 Plenum Press, New York

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Joshi, R., Snyder, F.F. (1989). Sequencing of Mammalian Messenger RNA Using Oligonucleotide Primers: Application to Hypoxanthine Phosphoribosyltransferase and a Phosphoglycerate Kinase Variant. In: Mikanagi, K., Nishioka, K., Kelley, W.N. (eds) Purine and Pyrimidine Metabolism in Man VI. Advances in Experimental Medicine and Biology, vol 253A. Springer, Boston, MA. https://doi.org/10.1007/978-1-4684-5673-8_78

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  • DOI: https://doi.org/10.1007/978-1-4684-5673-8_78

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4684-5675-2

  • Online ISBN: 978-1-4684-5673-8

  • eBook Packages: Springer Book Archive

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