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Repeated Sequences and Genome Architecture

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Structure and Function of Plant Genomes

Part of the book series: NATO Advanced Science Institutes Series ((NSSA,volume 63))

Abstract

The nuclear genome can be defined as the complement of all the DNA sequences found in the chromosomes. How the sequences are arranged with respect to one another, and how they are organised into chromosomes determines the architecture of the genome. In this paper I wish to summarise some general features of plant genome architecture and its evolution, putting special emphasis on the role played by repeated nucleotide sequences.

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References

  • Appels, R., Dennis, E. S., Smyth, D. R., and Peacock, W. J., 1981, Two repeated DNA sequences from the heterochromatic regions of rye (Secale cereale) chromosomes, Chromosoma (Berl.) 84:265–277.

    Article  CAS  Google Scholar 

  • Baltimore, D., 1981 Gene conversion: some implications for immunoglobulin genes, Cell 24: 592–594.

    Article  PubMed  CAS  Google Scholar 

  • Bedbrook, J. R., Jones, J., O’Dell, M., Thompson, R. D. and Flavell, R. B., 1980a Molecular characterisation of telomeric heterochromatin in Secale species, Cell 19: 545–560.

    Article  PubMed  CAS  Google Scholar 

  • Bedbrook, J. R., O’Dell, M. and Flavell, R. B., 1980b Amplification of rearranged sequences in cereal plants, Nature 288: 133–137.

    Article  CAS  Google Scholar 

  • Bennett, M. D., 1972 Nuclear DNA content and minimum generation time in herbaceous plants, Proc. R. Soc. Lond. B 181: 109–135.

    Article  PubMed  CAS  Google Scholar 

  • Bennett, M. D., 1982, Nucleotypic basis of the spatial ordering of chromosomes in eukaryotes and the implications of the order for genome evolution and phenotypic variation, in: “Genome Evolution”, G. A. Dover and R. B. Flavell, eds., Academic Press, London.

    Google Scholar 

  • Britten, R. J. and Kohne, D. E., 1968 Repeated sequences in DNA, Science 161: 529–540.

    Article  PubMed  CAS  Google Scholar 

  • Burr, B. and Burr, F. A., 1982 Ds controlling elements of maize at the shrunken locus are large and dissimilar insertions, Cell 29: 977–986.

    Article  PubMed  CAS  Google Scholar 

  • Cavalier-Smith, T., 1978 Nuclear volume control by nucleoskeletal DNA, selection for cell volume and cell growth rate and the solution of the DNA C-value paradox, J. Cell Science 34: 247–278.

    PubMed  CAS  Google Scholar 

  • Dennis, E. S., Gerlach, W. L. and Peacock, W. J., 1980 Identical polypyrimidine polypurine satellite DNA in wheat and barley, Heredity 44: 345–366.

    Article  Google Scholar 

  • Deumling, B., 1981 Sequence arrangement of a highly methylated satellite DNA of a plant, Scilla: a tandemly repeated inverted repeat. Proc. Nat. Acad. Sei. 78: 338–342.

    Article  CAS  Google Scholar 

  • Deumling, B. and Greilhuber, J., 1982 Characterisation of heterochromatin in different species of the Scilla siberica group (Liliaceae) by in situ hybridisation of satellite DNAs and fluorochrome banding, Chromosorna 84: 535–555.

    Article  CAS  Google Scholar 

  • Dover, G. A., 1982 Molecular drive: a cohesive mode of species evolution, Nature 299: 111–117.

    Article  PubMed  CAS  Google Scholar 

  • Dover, G. A., Brown, S., Coen, E., Dallas, J., Strachan, T. and Trick, M., 1982, The dynamics of genome evolution and species differentiation, in “Genome Evolution”, G. A. Dover and R. B. Flavell, eds., Academic Press, London.

    Google Scholar 

  • Evans, G. M., Rees, H., Snell, C. L. and Sun, S., 1972, The relationship between nuclear DNA amount and the characterisation of the mitotic cycle, in “Chromosomes Today” Longman, London 3:24–31.

    Google Scholar 

  • Flavell, R. B., 1980, The molecular characterisation and organisation of plant chromosomal DNA sequences. Ann. Rev. Plant Physiol. 31:569–596.

    Article  CAS  Google Scholar 

  • Flavell, R. B., 1982, Amplification, deletion and rearrangement; major sources of variation during species divergence, in “Genome Evolution”, G. A. Dover and R. B. Flavell, eds. Academic Press, London, pp 301–324.

    Google Scholar 

  • Flavell, R. B., Bennett, M. D., Smith, J. B. and Smith, D. B., 1974, Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochemical Genetics 12:257–269.

    Article  PubMed  CAS  Google Scholar 

  • Flavell, R. B., O’Dell, M. and Hutchinson, J., 1981 Nucleotide sequence organisation in plant chromosomes and evidence for sequence translocation during evolution, Cold Spring Harbor Symp’m Quant. Biol. 45: 501–508.

    Article  CAS  Google Scholar 

  • Flavell, R. B., Rimpau, J. and Smith, D. B., 1977 Repeated sequence DNA relationships in four cereal genomes, Chromosorna (Berl.) 63: 205–222.

    Article  CAS  Google Scholar 

  • Flavell, R. B., Rimpau, J., Smith, D. B., O’Dell, M. and Bedbrook, J. R., 1979, The evolution of plant genome structure, in “Plant Genome Organisation and Expression”, C. J. Leaver, ed., Plenum Press, pp 35-47.

    Google Scholar 

  • Flavell, R. B. and Smith, D. B., 1974 Variation in nucleolus organiser rRNA gene multiplicity in wheat and rye, Chromosorna (Berl.) 47: 327–334.

    Article  CAS  Google Scholar 

  • Gerlach, W. L. and Peacock, W. J., 1980 Chromosomal locations of highly repeated DNA sequences in wheat, Heredity 44: 269–276.

    Article  CAS  Google Scholar 

  • Hinegardner, R., 1976, Evolution of genome size, in “Molecular Evolution”, F. J. Ayala, ed., Sinaver Associates Inc. Mass. pp 179-199.

    Google Scholar 

  • Hutchinson, J. and Lonsdale, D., 1982, The chromosomal distribution of cloned highly repetitive sequences from hexarploid wheat, Heredity 48, 371–376.

    Article  CAS  Google Scholar 

  • John, B. and Miklos, G. L. G., 1979 Functional aspects of heterochromatin and satellite DNA, Int. Rev. Cytol. 58: 1–114.

    Article  PubMed  CAS  Google Scholar 

  • Jones, J. D. G. and Flavell, R. B., 1982a, The organizing of highly repeated DNA families and their relationship to C bands in chromosomes of Secale cereale, Chromosoma, in press.

    Google Scholar 

  • Jones, J. D. G. and Flavell, R. B., 1982b, The structure, amount and chromosomal localisation of defined repeated DNA sequences in species of the genus Secale, Chromosoma, in press.

    Google Scholar 

  • Klein, H. L. and Petes, T. D., 1981 Intrachromosomal gene conversion in yeast, Nature 289: 144–148.

    Article  PubMed  CAS  Google Scholar 

  • Martin, P. G., 1966 Variation in the amounts of nucleic acids in the cells of different species, Exp’l Cell. Res. 44: 84–90.

    Article  CAS  Google Scholar 

  • Mikus, M. D. and Petes, T. D., 1982 Recombination between genes located on non-homologous chromosomes in Saccharymyces cerevisiae, Genetics 101: 369–404.

    PubMed  CAS  Google Scholar 

  • Nagylaki, T. and Petes, T. D., 1982 Intrachromosomal gene conversion and the maintenance of sequence homogeneity among repeated genes, Genetics 100: 315–337.

    PubMed  CAS  Google Scholar 

  • Petes, T. D., 1980 Unequal meiotic recombination within tandem arrays of yeast ribosomal DNA genes, Cell 19: 765–774.

    Article  PubMed  CAS  Google Scholar 

  • Rimpau, J., Smith, D. B. and Flavell, R. B., 1978 Sequence organisation analysis of the wheat and rye genomes by interspecies DNA/DNA hybridisation, J. Molec. Biol. 123: 327–359.

    Article  PubMed  CAS  Google Scholar 

  • Scherer, S. and Davis, R. W., 1980 Recombination of dispersed repeated DNA sequences in yeast, Science 209: 1380–1384.

    Article  PubMed  CAS  Google Scholar 

  • Schweizer, D. and Ehrendorfer, F., 1982, Evolution of C band patterns in Asteraceae-Anthemideae, Biol. Zbl., in press.

    Google Scholar 

  • Smith, G. P., 1976 Evolution of repeated DNA sequences by unequal crossover, Science 191: 528–535.

    Article  PubMed  CAS  Google Scholar 

  • Stern, H. and Hotta, Y., 1978 Regulatory mechanism in meiotic crossing over, Ann. Rev. Plant. Physiol. 29: 415–436.

    Article  CAS  Google Scholar 

  • Szostak, J. W. and Wu, R., 1980 Unequal crossing over in the ribosomal DNA of Saccharomyces cerevisiae, Nature 284: 426–430.

    Article  PubMed  CAS  Google Scholar 

  • Thomas, J. B. and Kaltsikes, P. J., 1976 A bouquet-like attachment plate for telomeres in leptotene of rye revealed by heterochromatin staining, Heredity 36: 155–162.

    Article  Google Scholar 

  • Thompson, W. F. and Murray, M. G., 1980, Sequence organisation in pea and mung bean DNA and a model for genome evolution, in “Fourth John Innes Symposium”, D. R. Davies and D. A. Hopwood, eds., John Innes Institute, Norwich, U.K., pp 31–45.

    Google Scholar 

  • Zimmer, E. A., Martin, S. L., Beverley, S. M., Kan, Y. W. and Wilson, A. C., 1980, Rapid duplication and loss of genes coding for the α chains of hemoglobin, Proc. Nat. Acad. Sei. USA, 77:2158–2162.

    Article  CAS  Google Scholar 

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© 1983 Plenum Press, New York

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Flavell, R.B. (1983). Repeated Sequences and Genome Architecture. In: Ciferri, O., Dure, L. (eds) Structure and Function of Plant Genomes. NATO Advanced Science Institutes Series, vol 63. Springer, Boston, MA. https://doi.org/10.1007/978-1-4684-4538-1_1

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  • DOI: https://doi.org/10.1007/978-1-4684-4538-1_1

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4684-4540-4

  • Online ISBN: 978-1-4684-4538-1

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