Abstract
A wealth of sequence analysis and interpretation tools enables interested researchers to inspect, query and, ultimately, interpret DNA sequence data. In the context of sequencing an entire genome, the task of using each tool on each bit of DNA sequence data is daunting (see also Chapters 19, 35 to 39, 42 to 44 and 46). Even more formidable is the task of assessing and reassessing each output from each tool in the light of what is already known. The facts that sequence information in the public databases changes regularly and that new sequence analysis tools appear frequently compound the situation further.
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References
Gaasterland, T., and J. Lobo. 1994. Qualified Answers That Reflect User Needs and Preferences. In Proceedings of the International Conference on Very Large Databases, Santiago, Chile, 309–320.
Gaasterland, T., J. Lobo, N. Maltsev, and G. Chen. 1994. Assigning Function to CDS Through Qualified Query Answering. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, Stanford University.
Gaasterland, T., and E. Selkov. 1995. Reconstruction of Metabolic Networks Using Incomplete Information. In Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, England.
Gaasterland, T., and C. Sensen. 1996. MAGPIE: Automated Genome Interpretation. Trends in Genetics 12(2):76–78.
Rayl, K., T. Gaasterland, and T. Overbeek. 1994. Automating the Determination of 3d Protein Structure. Technical Report ANL-P417-0294, Argonne National Laboratory.
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Gaasterland, T., Sensen, C.W. (1998). MAGPIE: A Multipurpose Automated Genome Project Investigation Environment for Ongoing Sequencing Projects. In: de Bruijn, F.J., Lupski, J.R., Weinstock, G.M. (eds) Bacterial Genomes. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-6369-3_45
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DOI: https://doi.org/10.1007/978-1-4615-6369-3_45
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