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Sequence Skimming of Chromosome II of Rhodobacter sphaeroides 2.4.1 T

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Bacterial Genomes

Abstract

Rhodobacter sphaeroides is a photosynthetic member of the α-3 subgroup of Gram-negative bacteria (Woese, 1987). It is distinguished by a number of important characteristics which include at least six modes of growth. These accompany the ability of the organism to display a diverse range of metabolic activities, as well as other notable characteristics with respect to genome organization, evolution, and other processes (Table 43-1). This metabolic diversity may have evolved from a need to synthesize de novo a different range of compounds under each set of growth conditions.

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References

  • Allardet-Servent, A., S. Michaux-Charachon, E. Jumas-Bilak, L. Karayan, and M. Ramuz. 1993. Presence of one linear and one circular chromosome in the Agrobacterium tumefaciens C58 genome. J. Bacteriol. 175:7869–7874.

    PubMed  CAS  Google Scholar 

  • Allen, L. N., and R. S. Hanson. 1985. Construction of broad-host-range cosmid cloning vectors: identification of genes necessary for growth of Methylobacterium organophilum on methanol. J. Bacteriol. 161:955–962.

    PubMed  CAS  Google Scholar 

  • Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403–410.

    PubMed  CAS  Google Scholar 

  • Choudhary, M., C. Mackenzie, K. S. Nereng, E. Sodergren, G. M. Weinstock, and S. Kaplan. 1994. Multiple chromosomes in bacteria: structure and function of chromosome II of Rhodobacter sphaeroides 2.4.1T. J. Bacteriol. 176:7694–7702.

    PubMed  CAS  Google Scholar 

  • Chuang, S.-H, D. L. Daniels, and F. R. Blattner. 1993. Global regulation of gene expression in Escherichia coli. J. Bacteriol. 175:2026–2036.

    PubMed  CAS  Google Scholar 

  • Démolis, N., L. Mallet, F. Bussereau, and M. Jacquet. 1995. Improved strategy for large-scale sequencing using DNaseI cleavage for generating random subclones. Biotechniques 18:453–457.

    PubMed  Google Scholar 

  • Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucl. Acids Res. 12:387–395.

    Article  PubMed  CAS  Google Scholar 

  • Donohue, T. J., and S. Kaplan. 1991. Genetics of photosynthetic bacteria. Meth. Enzymol. 204:459–485.

    Article  PubMed  CAS  Google Scholar 

  • Dryden, S. C., and S. Kaplan. 1990. Localization and structural analysis of the ribosomal RNA operons of Rhodobacter sphaeroides. Nucl. Acids Res. 18:7267–7277.

    Article  PubMed  CAS  Google Scholar 

  • Hallenbeck, P. L., R. Lerchen, P. Hessler, and S. Kaplan. 1990a. Phosphoribulokinase activity and regulation of CO2 fixation critical for photosynthetic growth of Rhodobacter sphaeroides. J. Bacteriol. 172:1749–1761.

    PubMed  CAS  Google Scholar 

  • Hallenbeck, P. L., R. Lerchen, P. Hessler, and S. Kaplan. 1990b. Roles of CfxA, CfxB, and external electron acceptors in regulation of ribulose 1,5-bisphosphate carboxylase/ oxygenase expression in Rhodobacter sphaeroides. J. Bacteriol. 172:1736–1748.

    PubMed  CAS  Google Scholar 

  • Hensel, M., J. E. Shea, C. Gleeson, M. D. Jones, E. Dalton, and D. W. Holden. 1995. Simultaneous identification of bacterial virulence genes by negative selection. Science 269:400–403.

    Article  PubMed  CAS  Google Scholar 

  • Michaux, S., J. Paillisson, M.-J. Carles-Nurit, G. Bourg, A. Allardet-Servent, and M. Ramuz. 1993. Presence of two independent chromosomes in the Brucella melitensis 16M genome. J. Bacteriol. 175:701–705.

    PubMed  CAS  Google Scholar 

  • Neidle, E. L., and S. Kaplan. 1992. Rhodobacter sphaeroides rdxA, a homolog of Rhizobium meliloti fixG, encodes a membrane protein which may bind cytoplasmic [4Fe-4S] clusters. J. Bacteriol. 174:6444–6454.

    Google Scholar 

  • Neidle, E. L., and S. Kaplan. 1993. Expression of the Rhodobacter sphaeroides hemA and hemT genes encoding two 5-aminolevulinic acid synthase isozymes. J. Bacteriol. 175:2292–2303.

    PubMed  CAS  Google Scholar 

  • Sobral, B.W.S., R. J. Honeycutt, A. G. Atherly, and M. McClelland. 1991. Electrophoretic separation of the three Rhizobium meliloti replicons. J. Bacteriol. 173:5173–5180.

    PubMed  CAS  Google Scholar 

  • Suwanto, A., and S. Kaplan. 1989a. Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: genome size, fragment identification and gene localization. J. Bacteriol. 171:5840–5849.

    PubMed  CAS  Google Scholar 

  • Suwanto, A., and S. Kaplan. 1989b. Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: presence of two unique circular chromosomes. J. Bacteriol. 171:5850–5859.

    PubMed  CAS  Google Scholar 

  • Tabita, F. R., J. L. Gibson, B. Bowien, L. Dijkhuizen, and W. G. Meijer. 1992. Uniform designation for genes of the Calvin-Benson-Bassham reductive pentose phosphate pathway of bacteria. FEMS Microbiol. Lett. 99:107–110.

    Article  CAS  Google Scholar 

  • Ter Huume, A.A.H.M., S. Muir, M. van Houten, B.A.M. van der Zeijst, W. Gaastra, and J. G. Kusters, 1994. Characterization of three putative Serpulina hyodysenteriae hemolysins. Microb. Pathogen. 16:269–282.

    Article  Google Scholar 

  • Tobe, T., C. Sasakawa, N. Okada, Y. Honma, and M. Yoshikawa. 1992. vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri. J. Bacteriol. 174:6359–6367.

    PubMed  CAS  Google Scholar 

  • van Duin, J., G. P. Overbeek, and C. Backendorf. 1980. Functional recognition of phage RNA by 30-S ribosomal subunits in the absence of initiator tRNA. European J. Biochem. 110:593–597.

    Article  Google Scholar 

  • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221–271.

    PubMed  CAS  Google Scholar 

  • Zeilstra-Ryalls, J. H., and S. Kaplan. 1995. Aerobic and anerobic regulation in Rhodobacter sphaewides 2.4.1: the role of the fnrL gene. J. Bacteriol. 177:6422–6431.

    PubMed  CAS  Google Scholar 

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© 1998 Springer Science+Business Media New York

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Mackenzie, C., Chidambaram, M., Choudhary, M., Nereng, K.S., Kaplan, S., Weinstock, G.M. (1998). Sequence Skimming of Chromosome II of Rhodobacter sphaeroides 2.4.1 T. In: de Bruijn, F.J., Lupski, J.R., Weinstock, G.M. (eds) Bacterial Genomes. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-6369-3_43

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  • DOI: https://doi.org/10.1007/978-1-4615-6369-3_43

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4613-7925-6

  • Online ISBN: 978-1-4615-6369-3

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