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Chromosomal Rearrangements

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Bacterial Genomes

Abstract

Repeated sequences provide the potential for altering and destabilizing the genome (reviewed by Petes and Hill, 1988). Multigene families, IS elements and shorter repeated sequences like REP (Higgins et al., 1982; Gibson et al., 1984; Stern et al., 1984; Dimri et al., 1992) and ERIC (Sharpies and Lloyd, 1990; Hulton et al., 1991) are dispersed throughout bacterial genomes (reviewed by Riley and Krawiec, 1987; Lupski and Weinstock, 1992; see also Chapters 4 and 5). These sequences provide regions of homology for unequal crossing-over events. Such ectopic recombination events can lead to inversions, deletions, or duplications of regions of the chromosome. An inversion results when the repeated sequences involved in the recombination event are in inverse orientation to one another on the chromosome. Deletions and tandem duplications result from ectopic recombination between repeated sequences in the same or tandem orientation (Figure 11-1).

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References

  • Albertini, A. M., M. Hofer, M. P. Calos, J. H. Miller. 1982. On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions. Cell 29:319–328.

    Article  PubMed  CAS  Google Scholar 

  • Anderson, R. P., C. G. Miller, J. R. Roth. 1976. Tandem duplications of the histidine operon observed following generalized transduction in Salmonella typhimurium. J. Mol. Biol. 105:201–218.

    Article  PubMed  CAS  Google Scholar 

  • Anderson, R. P., J. R. Roth. 1977. Tandem genetic duplications in phage and bacteria. Ann. Rev. Microbiol. 31:473–505.

    Article  CAS  Google Scholar 

  • Anderson, R. P., J. R. Roth. 1978. Tandem chromosomal duplications in Salmonella typhimurium: Fusion of histidine genes to novel promoters. J. Mol. Biol. 119:147–166.

    Article  PubMed  CAS  Google Scholar 

  • Anderson, R. P., J. R. Roth. 1979. Gene duplication in bacteria: Alteration of gene dosage by sister-chromosome exchanges. Cold Spring Harbor Symposium of Quantitative Biology 43:1083–1087.

    Article  CAS  Google Scholar 

  • Anderson, P., J. Roth. 1981. Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA (rrn) cistrons. Proc. Natl. Acad. Sci. USA 78:3113–3117.

    Article  PubMed  CAS  Google Scholar 

  • Campbell, A. 1963. Segregates from lysogenic heterogenotes carrying recombinant lambda prophages. Virology 20:344–356.

    Article  PubMed  CAS  Google Scholar 

  • Campbell, A. 1965. The steric effect in lysogenization by bacteriophage lambda. 1. Lysogenization of a partially diploid strain of Escherichia coli K-12. Virology 27:329–339.

    Article  PubMed  CAS  Google Scholar 

  • Chumley, F. G., J. R. Roth. 1980. Rearrangement of the bacterial chromosome using Tn10 as a region of homology. Genetics 94:1–14.

    Google Scholar 

  • Dimpfl, J., H. Echols. 1989. Duplication mutation as an SOS response in Escherichia coli: enhanced duplication formaton by a constitutively activated RecA. Genetics 123:255–260.

    PubMed  CAS  Google Scholar 

  • Dimri, G. P., K. E. Rudd, M. K. Morgan, H. Bayat, G. F.-L. Ames. 1992. Physical mapping of repetitive extragenic palindromic sequences in Escherichia coli and phylogenetic distribution among Escherichia coli strains and other enteric bacteria. J. Bacteriol. 174:4583–4593.

    PubMed  CAS  Google Scholar 

  • Edlund, T., S. Nomark. 1981. Recombination between short DNA homologies causes tandem duplications. Nature 292:269–271.

    Article  PubMed  CAS  Google Scholar 

  • Gilson, E., J. M. Clement, D. Brutlag, M. Hofnung. 1984. A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli. EMBO J. 3:1417–1421.

    PubMed  CAS  Google Scholar 

  • Goldberg, I. and J. J. Mekalanos. 1986. Effect of a recA gene mutation on cholera toxin gene amplification and deletion events. J. Bacteriol. 165:723–731.

    PubMed  CAS  Google Scholar 

  • Haack, K. R., J. R. Roth. 1995. Recombination between chromosomal IS200 elements supports frequent duplication formation in Salmonella typhimurium. Genetics 141:1245–1252.

    PubMed  CAS  Google Scholar 

  • Heath, J. D. 1992. Control of chromosomal rearrangements in Escherichia coli Ph.D. Thesis University of Texas Health Science Center at Houston.

    Google Scholar 

  • Heath, J. D., G. M. Weinstock. 1991. Tandem duplications of the lac region of the Escherichia coli chromosome. Biochimie. 73:343–352.

    Article  PubMed  CAS  Google Scholar 

  • Higgins, C. F., G. F. L. Ames, W. M. Barnes, J. M. Clement, M. Hofnung. 1982. A Novel intercistronic regulatory element of prokaryotic operons. Nature 298:760–762.

    Article  PubMed  CAS  Google Scholar 

  • Hill, C. W., G. Combriato. 1973. Genetic duplications induced at very high frequency by ultraviolet irradiation in Escherichia coli Molec. Gen. Genet. 127:197–214.

    Article  PubMed  CAS  Google Scholar 

  • Hill, C. W., R. H. Grafstrom, B. W. Harnish, B. S. Hillman. 1977. Tandem duplications resulting from recombination between ribosomal RNA genes in Escherichia coli. J. Mol. Biol. 116:407–428.

    Article  PubMed  CAS  Google Scholar 

  • Hoffman, G. R., R. W. Morgan, R. C. Harvey. 1978. Effects of chemical and physical mutagens on the frequency of a large genetic duplication in Salmonella typhimurium I. Induction of duplications. Mutation Research 52:73–80.

    Article  Google Scholar 

  • Horiuchi, R., S. Horiuchi, A. Novick. 1963. The genetic basis of hypersynthesis of ß-galactosidase. Genetics 48:157–169.

    PubMed  CAS  Google Scholar 

  • Hulton, C. S. J., C. F. Higgins, P. M. Sharp. 1991. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5:825–834.

    Article  PubMed  CAS  Google Scholar 

  • Li W-H, D. Graur. 1991. Fundamentals of molecular evolution. Sinauer Associates, Inc., Sunderland, Massachusetts.

    Google Scholar 

  • Lin, R. J., M. Capage, C. W. Hill. 1984. A repetitive DNA sequence rhs, responsible for duplications within the Escherichia coli K-12 chromosome. J. Mol. Biol. 177:1–18.

    Article  PubMed  CAS  Google Scholar 

  • Lupski, J. R., J. R. Roth, G. M. Weinstock. 1996. Chromosomal duplications in bacteria, fruit flies, and humans. Am. J. Hum. Genet. 58:21–27.

    PubMed  CAS  Google Scholar 

  • Lupski, J. R., G. M. Weinstock. 1992. Short, interspersed repetitive DNA sequences in prokaryotic genomes. J. Bacteriol. 174:4525–4529.

    PubMed  CAS  Google Scholar 

  • Ohno, S. 1970. Evolution by Gene Duplication. Springer-Verlag, Berlin.

    Google Scholar 

  • Petes, T. D., C. W. Hill. 1988. Recombination between repeated genes in microorganisms. Ann. Rev. Genet. 22:147–168.

    Article  PubMed  CAS  Google Scholar 

  • Petit. M.-A., J. Dimpfl, M. Radman, H. Echols. 1991. Control of large chromosomal duplications in Escherichia coli by the mismatch repair system. Genetics 126:327–332.

    Google Scholar 

  • Riley, M., A. Anilionia. 1978. Evolution of the bacterial genome. Ann. Rev. Microbiol. 32:519–560.

    Article  CAS  Google Scholar 

  • Riley, M., S. Krawiec. 1987. Evolutionary history of enteric bacteria, pp. 967–981. In, F. C. Neidhardt, J. L. Ingraham, L. B. Low, B. Magasanik, M. Schaechter, H. E. Umbarger (ed.), Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, vol. 2. American Society for Microbiology, Washington, D.C.

    Google Scholar 

  • Roth, J. R., N. Benson, T. Galitski, K. Haack, J. Lawrence, L. Miesel. 1996. Rearrangements of the bacterial chromosome: formation and applications. In: Neidhardt F.C. (ed) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology. American Society for Microbiology, Washington, D.C. (in press).

    Google Scholar 

  • Sharpies, G. J., R. G. Lloyd. 1990. A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes. Nucleic. Acids. Res. 18:6503–6508.

    Article  Google Scholar 

  • Shyamala, V., E. Schneider, G. F. L. Ames. 1990. Tandem chromosomal duplications: role of REP sequences in the recombination event at the joinpoint. EMBO J. 9:939–946.

    PubMed  CAS  Google Scholar 

  • Sonti, R. V., J. R. Roth. 1989. Role of gene duplications in the adaption of Salmonella typhimurium to growth on limiting carbon sources. Genetics 123:19–28.

    PubMed  CAS  Google Scholar 

  • Stern, M. J., G. F. L. Ames, N. H. Smith, E. C. Robinson, C. F. Higgins. 1984. Repetitive extragenic palindromic sequences: A major component of the bacterial genome. Cell 37:1015–1026.

    Article  PubMed  CAS  Google Scholar 

  • Weinstock, G. M. 1994. Bacterial genomes: Mapping and stability. ASM News 60:73–78.

    Google Scholar 

  • Yagi, Y. and D. B. Clewell. 1977. Identification and characterization of a small sequence located at two sites on the amplifiable tetracycline resistance plasmid pAMalphal in Streptococcus faecalis. J. Bacteriol. 129:400–406.

    PubMed  CAS  Google Scholar 

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Weinstock, G.M., Lupski, J.R. (1998). Chromosomal Rearrangements. In: de Bruijn, F.J., Lupski, J.R., Weinstock, G.M. (eds) Bacterial Genomes. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-6369-3_11

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  • DOI: https://doi.org/10.1007/978-1-4615-6369-3_11

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