Abstract
Repeated sequences provide the potential for altering and destabilizing the genome (reviewed by Petes and Hill, 1988). Multigene families, IS elements and shorter repeated sequences like REP (Higgins et al., 1982; Gibson et al., 1984; Stern et al., 1984; Dimri et al., 1992) and ERIC (Sharpies and Lloyd, 1990; Hulton et al., 1991) are dispersed throughout bacterial genomes (reviewed by Riley and Krawiec, 1987; Lupski and Weinstock, 1992; see also Chapters 4 and 5). These sequences provide regions of homology for unequal crossing-over events. Such ectopic recombination events can lead to inversions, deletions, or duplications of regions of the chromosome. An inversion results when the repeated sequences involved in the recombination event are in inverse orientation to one another on the chromosome. Deletions and tandem duplications result from ectopic recombination between repeated sequences in the same or tandem orientation (Figure 11-1).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Albertini, A. M., M. Hofer, M. P. Calos, J. H. Miller. 1982. On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions. Cell 29:319–328.
Anderson, R. P., C. G. Miller, J. R. Roth. 1976. Tandem duplications of the histidine operon observed following generalized transduction in Salmonella typhimurium. J. Mol. Biol. 105:201–218.
Anderson, R. P., J. R. Roth. 1977. Tandem genetic duplications in phage and bacteria. Ann. Rev. Microbiol. 31:473–505.
Anderson, R. P., J. R. Roth. 1978. Tandem chromosomal duplications in Salmonella typhimurium: Fusion of histidine genes to novel promoters. J. Mol. Biol. 119:147–166.
Anderson, R. P., J. R. Roth. 1979. Gene duplication in bacteria: Alteration of gene dosage by sister-chromosome exchanges. Cold Spring Harbor Symposium of Quantitative Biology 43:1083–1087.
Anderson, P., J. Roth. 1981. Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA (rrn) cistrons. Proc. Natl. Acad. Sci. USA 78:3113–3117.
Campbell, A. 1963. Segregates from lysogenic heterogenotes carrying recombinant lambda prophages. Virology 20:344–356.
Campbell, A. 1965. The steric effect in lysogenization by bacteriophage lambda. 1. Lysogenization of a partially diploid strain of Escherichia coli K-12. Virology 27:329–339.
Chumley, F. G., J. R. Roth. 1980. Rearrangement of the bacterial chromosome using Tn10 as a region of homology. Genetics 94:1–14.
Dimpfl, J., H. Echols. 1989. Duplication mutation as an SOS response in Escherichia coli: enhanced duplication formaton by a constitutively activated RecA. Genetics 123:255–260.
Dimri, G. P., K. E. Rudd, M. K. Morgan, H. Bayat, G. F.-L. Ames. 1992. Physical mapping of repetitive extragenic palindromic sequences in Escherichia coli and phylogenetic distribution among Escherichia coli strains and other enteric bacteria. J. Bacteriol. 174:4583–4593.
Edlund, T., S. Nomark. 1981. Recombination between short DNA homologies causes tandem duplications. Nature 292:269–271.
Gilson, E., J. M. Clement, D. Brutlag, M. Hofnung. 1984. A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli. EMBO J. 3:1417–1421.
Goldberg, I. and J. J. Mekalanos. 1986. Effect of a recA gene mutation on cholera toxin gene amplification and deletion events. J. Bacteriol. 165:723–731.
Haack, K. R., J. R. Roth. 1995. Recombination between chromosomal IS200 elements supports frequent duplication formation in Salmonella typhimurium. Genetics 141:1245–1252.
Heath, J. D. 1992. Control of chromosomal rearrangements in Escherichia coli Ph.D. Thesis University of Texas Health Science Center at Houston.
Heath, J. D., G. M. Weinstock. 1991. Tandem duplications of the lac region of the Escherichia coli chromosome. Biochimie. 73:343–352.
Higgins, C. F., G. F. L. Ames, W. M. Barnes, J. M. Clement, M. Hofnung. 1982. A Novel intercistronic regulatory element of prokaryotic operons. Nature 298:760–762.
Hill, C. W., G. Combriato. 1973. Genetic duplications induced at very high frequency by ultraviolet irradiation in Escherichia coli Molec. Gen. Genet. 127:197–214.
Hill, C. W., R. H. Grafstrom, B. W. Harnish, B. S. Hillman. 1977. Tandem duplications resulting from recombination between ribosomal RNA genes in Escherichia coli. J. Mol. Biol. 116:407–428.
Hoffman, G. R., R. W. Morgan, R. C. Harvey. 1978. Effects of chemical and physical mutagens on the frequency of a large genetic duplication in Salmonella typhimurium I. Induction of duplications. Mutation Research 52:73–80.
Horiuchi, R., S. Horiuchi, A. Novick. 1963. The genetic basis of hypersynthesis of ß-galactosidase. Genetics 48:157–169.
Hulton, C. S. J., C. F. Higgins, P. M. Sharp. 1991. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5:825–834.
Li W-H, D. Graur. 1991. Fundamentals of molecular evolution. Sinauer Associates, Inc., Sunderland, Massachusetts.
Lin, R. J., M. Capage, C. W. Hill. 1984. A repetitive DNA sequence rhs, responsible for duplications within the Escherichia coli K-12 chromosome. J. Mol. Biol. 177:1–18.
Lupski, J. R., J. R. Roth, G. M. Weinstock. 1996. Chromosomal duplications in bacteria, fruit flies, and humans. Am. J. Hum. Genet. 58:21–27.
Lupski, J. R., G. M. Weinstock. 1992. Short, interspersed repetitive DNA sequences in prokaryotic genomes. J. Bacteriol. 174:4525–4529.
Ohno, S. 1970. Evolution by Gene Duplication. Springer-Verlag, Berlin.
Petes, T. D., C. W. Hill. 1988. Recombination between repeated genes in microorganisms. Ann. Rev. Genet. 22:147–168.
Petit. M.-A., J. Dimpfl, M. Radman, H. Echols. 1991. Control of large chromosomal duplications in Escherichia coli by the mismatch repair system. Genetics 126:327–332.
Riley, M., A. Anilionia. 1978. Evolution of the bacterial genome. Ann. Rev. Microbiol. 32:519–560.
Riley, M., S. Krawiec. 1987. Evolutionary history of enteric bacteria, pp. 967–981. In, F. C. Neidhardt, J. L. Ingraham, L. B. Low, B. Magasanik, M. Schaechter, H. E. Umbarger (ed.), Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, vol. 2. American Society for Microbiology, Washington, D.C.
Roth, J. R., N. Benson, T. Galitski, K. Haack, J. Lawrence, L. Miesel. 1996. Rearrangements of the bacterial chromosome: formation and applications. In: Neidhardt F.C. (ed) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology. American Society for Microbiology, Washington, D.C. (in press).
Sharpies, G. J., R. G. Lloyd. 1990. A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes. Nucleic. Acids. Res. 18:6503–6508.
Shyamala, V., E. Schneider, G. F. L. Ames. 1990. Tandem chromosomal duplications: role of REP sequences in the recombination event at the joinpoint. EMBO J. 9:939–946.
Sonti, R. V., J. R. Roth. 1989. Role of gene duplications in the adaption of Salmonella typhimurium to growth on limiting carbon sources. Genetics 123:19–28.
Stern, M. J., G. F. L. Ames, N. H. Smith, E. C. Robinson, C. F. Higgins. 1984. Repetitive extragenic palindromic sequences: A major component of the bacterial genome. Cell 37:1015–1026.
Weinstock, G. M. 1994. Bacterial genomes: Mapping and stability. ASM News 60:73–78.
Yagi, Y. and D. B. Clewell. 1977. Identification and characterization of a small sequence located at two sites on the amplifiable tetracycline resistance plasmid pAMalphal in Streptococcus faecalis. J. Bacteriol. 129:400–406.
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1998 Springer Science+Business Media New York
About this chapter
Cite this chapter
Weinstock, G.M., Lupski, J.R. (1998). Chromosomal Rearrangements. In: de Bruijn, F.J., Lupski, J.R., Weinstock, G.M. (eds) Bacterial Genomes. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-6369-3_11
Download citation
DOI: https://doi.org/10.1007/978-1-4615-6369-3_11
Publisher Name: Springer, Boston, MA
Print ISBN: 978-1-4613-7925-6
Online ISBN: 978-1-4615-6369-3
eBook Packages: Springer Book Archive