Abstract
An important requirement for a detailed understanding of the molecular basis of the interaction of a carbohydrate with its protein receptor is a high-resolution three dimensional structure of the complex. Historically, such structural information has derived from crystallographic studies which can illustrate in detail the precise nature of certain carbohydrate-protein interactions in the solid state (reviewed by Cambillau (1995)). In contrast, few high-resolution structural studies of glycan-protein interactions in solution using nuclear magnetic resonance have been reported. The solution structure of the complex is of importance since a comparison with the solution structure of the free ligand may be more meaningful, and moreover the dynamics of the system are accessible from relaxation time measurements.
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Andrews, J. S., Weimar, T., Frandsen, T. B., Svensson, B., Pinto, B. M., 1995, Novel disaccharides containing sulfur in the ring and nitrogen in the interglycosidic linkage-conformation of methyl 5′ — thio — 4 — N-alpha-inhibitor. J. Am. Chem. Soc. 117: 10799.
Arepalli, S. R., Glaudemans, C. P. J., Daves, G. D., Kovac, P., and Bax, A., 1995, Identification of protein-mediated indirect nOe effects in a disaccharide-Fab’ complex by transferred ROESY, J. Magn. Reson. B. 106: 195.
Asensio, J. L., Cañada, F. J. and Jimenez-Barbero, J., 1995, Studies of the bound conformations of methyl alpha-lactoside and methyl beta-allolactoside to ricin b-chain using transferred NOE experiments in the laboratory and rotating frames, assisted by molecular mechanics and dynamics calculations, Eur. J. Biochem. 233: 618.
Bax, A., Clore, G. M., Driscoll, P. C., Gronenborn, A. M., Ikura, M. and Kay, L. E., 1990, Practical aspects of proton-carbon-carbon-proton 3-dimensional correlation spectroscopy of C-13-labelled proteins, J. Magn. Reson. 87: 620–627.
Bevilacqua, V. L., Thomson, D. S. and Prestegard, J. H., 1992, Conformation of methyl beta-lactoside bound to the ricin-b-chain — interpretation of transferred nuclear Overhauser effects facilitated by spin simulation and selective deuteration, Biochemistry 29: 5529.
Bundle, D. R., Baumann, H., Brisson, J. R., Gagne, S. M., Zdanov, A. and Cygler, M., 1994, Solution structure of a trisaccharide-antibody complex — comparison of NMR measurements with a crystal structure, Biochemistry 33: 5183.
Cambillau, C., 1995, The structural features of carbohydrate-protein interactions revealed by x-ray crystallography, in “New Comprehensive Biochemistry” eds. Neuberger A. and van Deenen, L. L. M. Vol 29a: pp 29–65.
Clore, G. M. and Gronenborn, A. M., 1982, Theory and applications of the transferred Overhauser effect to the study of the conformations of small ligands bound to proteins, J. Magn. Reson. 48: 402.
Clore, G. M. and Gronenborn, A. M., 1983, Theory of the time-dependent transferred nuclear Overhauser effect: applications to structural analysis of ligand-protein complexes in solution., J. Magn. Reson. 53: 423.
Glaudemans, C. P. J., Lerner, L., Daves, G. D., Kovac, P., Venable, R. and Bax, A., 1990, Significant conformational changes in an antigenic carbohydrate epitope upon binding to a monoclonal antibody, Biochemistry 29: 10906.
Homans, S. W. and Forster, M., 1992, Application of restrained minimization, simulated annealing and molecular dynamics simulations for the conformational analysis of oligosaccharides, Glycobiology 2: 143.
Ikura, M., Kay, L. E. and Bax, A., 1990, A novel approach for sequential assignment of 1H, 13C and 15N spectra of larger proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin, Biochemistry 29: 4659.
London, R. E., Perlman, M. E., and Davis, D. G., 1992, Relaxation matrix analysis of the transferred Overhauser effect for finite exchange rates, J. Magn. Reson. 97:79.
Low, D. G., Probert, M. A., Embleton, G., Seshadri, K., Field, R. A., Homans, S.W., Windust, J. and Davis, P. J., 1996, Structure of a glycoconjugate in solution and in complex with an antibody Fv fragment, Glycobiology in press.
Ni, F., 1994, Recent developments in transferred NOE methods. Progr. NMR Spectr. 26: 517.
Nyholm, P-G., Magnusson, G., Zheng, Z., Norel, R., Binnington-Boyd, B. and Lingwood, C. A., 1996, Two distinct binding sites for globotriaosyl ceramide on verotoxins: identification by molecular modelling and confirmation using deoxy analogues and a new glycolipid receptor for all verotoxins, Chemistry and Biology 3: 263.
Perkins, S. J., 1982, Application of ring current calculations to the protein and transfer RNA, in “Biological Magnetic Resonance” (eds. Berliner, L., and Reuben, J.) Plenum Press, New York. Vol. 4, Chapter 4, pp 193–336.
Petros, A. M., Kawai, M., Luly, J. R. and Fesik, S. W., 1992, Conformation of two immunosuppresive FK506 analogues when bound to FKBP by isotope-filtered NMR, FEBS Letts. 308: 309.
Poppe, L., Dabrowski, J., von der Lieth, C-W., Koike, K. and Ogawa, T., 1990, Three-dimensional structure of the oligosaccharide terminus of globotriaosylceramide and isoglobotriaosylceramide in solution, Eur. J. Biochem. 189: 313.
Richardson, J. M., Milton, M. J. and Homans, S. W., 1995, Solution dynamics of the oligosaccharide moiety of ganglioside Gm 1: comparison of solution conformations with the bound state conformation in association with cholera toxin b-pentamer, J. Mol Recog. 8: 358.
Scheffler, K., Ernst, B., Katapodis, A., Magnani, J. L., Wang, W. T., Weiseman, R. and Peters, T., 1995, Determination of the bioactive conformation of the carbohydrate ligand in the e-selectin sialyl lewis(x) complex, Angew. Chem. Int. Ed. Engl. 34: 1841.
Stein, P. E., Boodhoo, A., Tyrrell, G. J., Brunton, J. L., and Read, R. J., 1992, Crystal structure of the cell-binding B oligomer of verotoxin-1 from E. coli, Nature 355: 748.
Weber, C., Wider, G., von Freyberg, B., Traber, R., Braun, W., Widmer, H. and Wüthrich, K., 1991, The NMR structure of cyclosporine-A bound to cyclophilin in aqueous solution, Biochemistry 30: 6563.
Weimar, T. and Peters, T., 1994, Aleuria aurantia agglutinin recognizes multiple conformations of α-L-Fuc(1–6)-β-D-GlcNAc-OMe, Angew. Chem. Int. Ed. Engl 33: 88.
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Homans, S.W., Field, R.A., Milton, M.J., Probert, M., Richardson, J.M. (1998). Probing Carbohydrate-Protein Interactions by High-Resolution NMR Spectroscopy. In: Axford, J.S. (eds) Glycoimmunology 2. Advances in Experimental Medicine and Biology, vol 435. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-5383-0_3
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DOI: https://doi.org/10.1007/978-1-4615-5383-0_3
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