Skip to main content

Initiation and regulation mechanisms of ribosomal RNA transcription in the eukaryote acanthamoeba castellanii

  • Chapter
Molecular Mechanisms of Cellular Growth

Abstract

Acanthamoeba rRNA transcription involves the binding of a transcription initiation factor (TIF) to the core promoter of rDNA to form the preinitiation complex. This complex is formed in the absence of RNA polymerase I, and persists for multiple rounds of initiation. Polymerase I next binds to form the initiation complex. This binding is DNA sequence-independent, and is directed by protein-protein contacts with TIF. DNA melting occurs in a separate step. In contrast to most prokaryotic transcription, melting occurs only following nucleotide addition and β-γ hydrolysis of ATP is not required as for polymerase II. Growth-dependent regulation of rRNA transcription is accomplished by modification of RNA polymerase I. The inactive form of polymerase (PolE) is unable to bind to the promoter and has altered heat stability. PolE is still active in elongation; thus, the modification affects the polymerase site involved in TIF contact. Modification of a polymerases I and III common subunit has been detected leading to the suggestion that transcription of stable RNAs of the ribosome might be co-regulated by this mechanism.

Dedicated to the memory of Preecha Kownin

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Paule MR, Iida CT, Perna PJ, Harris GH, Knoll DA, D’Alessio JM: In vitro evidence that eukaryotic ribosomal RNA transcription is regulated by modification of RNA polymerase I. Nuc Acids Res 12: 8161–8180, 1984

    Article  CAS  Google Scholar 

  2. Bateman E, Paule MR: Regulation of eukaryotic ribosomal RNA synthesis by RNA polymerase I modification. Cell 47: 445–450, 1986

    Article  PubMed  CAS  Google Scholar 

  3. Learned RM, Smale ST, Haitiner MM, Tjian R: Regulation of human ribosomal RNA transcription. Proc Natl Acad Sci USA 80: 3558–3562, 1983

    Article  PubMed  CAS  Google Scholar 

  4. Sollner-Webb B, Tower J: Transcription of cloned eukaryotic ribosomal RNA genes. Ann Rev Biochem 55: 801–830, 1986

    Article  PubMed  CAS  Google Scholar 

  5. Martindale DW: A conjugation-specific gene (cnjC) from Tetrahymena encodes a protein homologous to yeast RNA polymerase subunits (RPB3, RPC40) and similar to a portion of the prokaryotic RNA polymerase a subunit (rpoA). Nucleic Acids Res 18: 2953–2960, 1990

    Article  PubMed  CAS  Google Scholar 

  6. Learned RM, Learned TK, Haitiner MM, Tjian RT: Human rRNA transcription is modulated by the coordinate binding of two factors to an upstream control element. Cell 45: 847–857, 1986

    Article  PubMed  CAS  Google Scholar 

  7. Schnapp A, Clos J, Hædelt W, Schreck R, Cvekl A, Grummt I: Isolation and functional characterization of TIF-IB, a factor that confers promoter specificity to mouse RNA polymerase I. Nucleic Acids Res 18: 1385–1393, 1990

    Article  PubMed  CAS  Google Scholar 

  8. Pikaard CS, McStay B, Schultz MC, Bell SP, Reeder RH: The Xenopus ribosomal gene enhancers bind an essential polymerase I transcription factor, xUBF. Genes and Development 3: 1779–1788, 1989

    Article  PubMed  CAS  Google Scholar 

  9. Smith SD, Oriahi E, Lowe D, Yang-Yen H-F, O’Mahony D, Rose K, Chen K, Rothblum LI: Characterization of factors that direct transcription of rat ribosomal DNA. Mol Cell Biol 10: 3105–3116, 1990

    PubMed  CAS  Google Scholar 

  10. Jantzen H-M, Admon A, Bell SP, Tjian R: Nucleolar transcription factor hUBF contains a DNA binding motif with homology to HMG proteins. Nature 1990

    Google Scholar 

  11. Bell SP, Pikaard CS, Reeder RH, Tjian R: Molecular mechanisms governing species-specific transcription of ribosomal RNA. Cell 59: 489–497, 1989

    Article  PubMed  CAS  Google Scholar 

  12. Pikaard CS, Smith SD, Reeder RH, Rothblum L: rUBF, an RNA polymerase I transcription factor from rats, produces DNase I footprints identical to those produced by xUBF, its homolog from frogs. Mol Cell Biol 10: 3810–3812, 1980

    Google Scholar 

  13. Iida CT, Kownin P, Paule MR: Ribosomal RNA transcription: Proteins and DNA sequences involved in preinitiation complex formation. Proc Natl Acad Sci USA 82: 1668–1672, 1985

    Article  PubMed  CAS  Google Scholar 

  14. Bateman E, Iida CT, Kownin P, Paule MR: Footprinting of ribosomal RNA genes by transcription initiation factor and RNA polymerase I. Proc Natl Acad Sci USA 82: 8004–8008, 1985

    Article  PubMed  CAS  Google Scholar 

  15. Galas D, Schmitz A: DNAse footprinting: a simple method for the detection of protein-DNA binding specificity. Nuc Acids Res 5: 3157–3170, 1978

    Article  CAS  Google Scholar 

  16. Bateman E, Paule MR: Events during eukaryotic rRNA transcription initiation and elongation: Conversion from the closed to the open promoter complex requires nucleotide substrates. Mol Cell Biol 8: 1940–1946, 1988

    PubMed  CAS  Google Scholar 

  17. Kownin P, Iida CT, Brown-Shimer S, Paule MR: The ribosomal RNA promoter of Acanthamoeba castellanii determined by transcription in a cell-free system. Nuc Acids Res 13: 6237–6247, 1985

    Article  CAS  Google Scholar 

  18. Kownin P, Bateman E, Paule MR: Effects of single-base substitutions within the Acanthamoeba castellanii rRNA promoter on transcription and on binding of transcription initiation factor and RNA polymerase. Mol Cell Biol 8: 747–753, 1988

    PubMed  CAS  Google Scholar 

  19. Kownin P, Bateman E, Paule MR: Eukaryotic RNA polymerase I promoter binding is directed by protein contacts with transcription initiation factor and is DNA sequenceindependent. Cell 50: 693–699, 1987

    Article  PubMed  CAS  Google Scholar 

  20. Hertzberg RP, Dervan PB: Cleavage of double helical DNA by methidiumpropyl-EDTA iron(II). J Am Chem Soc 104: 313–315, 1982

    Article  CAS  Google Scholar 

  21. Reeder RH: Regulatory elements of the genetic ribosomal gene. Curr Opinion Cell Biol 1: 466–474, 1989

    Article  PubMed  CAS  Google Scholar 

  22. Yang-Yen H-F, Rothblum LI: Purification and characterization of an HMGlike, DNA-binding protein that stimulates ribosomal RNA synthesis in vitro. Mol Cell Biol 8: 3406–3414, 1988

    PubMed  CAS  Google Scholar 

  23. Mendel D, Dervan PB: Hoogsteen base pairs proximal and distal to echinomycin binding sites on DNA. Proc Natl Acad Sci USA 84: 910–914, 1987

    Article  PubMed  CAS  Google Scholar 

  24. Bunick D, Zandomeni R, Ackerman S, Weinmann R: Mechanism of RNA polymerase II-specific initiation of transcription in vitro: ATP requirement and uncapped runoff transcripts. Cell 29: 877–886, 1982

    Article  PubMed  CAS  Google Scholar 

  25. Detke S, Paule MR: DNA-dependent RNA polymerases from Acanthamoeba castellanii: Multiple forms of the class III enzyme and levels of activity of the polymerase classes during encystment. Biochim Biophys Acta 520: 131–138, 1978

    Article  PubMed  CAS  Google Scholar 

  26. Spindler S, Duester GL, D’Alessio JM, Paule MR: A rapid and facile procedure for the preparation of RNA polymerase I from Acanthamoeba castellanii: Purification and subunit structure. J Biol Chem 253: 4669–4675, 1978

    PubMed  CAS  Google Scholar 

  27. D’Alessio JM, Perna PJ, Paule MR: DNA-dependent RNA polymerases from Acanthamoeba castellanii: Comparative subunit structure of the homogeneous enzymes. J Biol Chem 254: 11282–11287, 1979

    PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1991 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Paule, M.R. et al. (1991). Initiation and regulation mechanisms of ribosomal RNA transcription in the eukaryote acanthamoeba castellanii. In: Morgan, H.E. (eds) Molecular Mechanisms of Cellular Growth. Developments in Molecular and Cellular Biochemistry, vol 7. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-3886-8_15

Download citation

  • DOI: https://doi.org/10.1007/978-1-4615-3886-8_15

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4613-6733-8

  • Online ISBN: 978-1-4615-3886-8

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics