Abstract
The phenomenal pace of development of the genome project in recent years has been most beneficial to the field of linkage analysis. Many exciting theoretical and practical developments would not have been possible without the advances in molecular genetics. Presumably, the prospect that a complete human linkage map of approximately 2 cM resolution will soon be available will also have far reaching effects on society. In the not too distant future much of the genetic make-up of an individual may be recognized at birth. It is timely and demonstrates Haldane’s foresight that he envisioned this situation a long time ago. In an article entitled The future of biology written before 1927, he wrote of what are now called genetic markers and predicted that
“we could use them, by a method worked out on flies by Morgan of New York and his associates, as landmarks for the study of such characters as musical ability, obesity, and bad temper. When a baby arrived we should have a physical examination and a blood analysis done on him, and say something like this: ‘He has got— from his father, so it’s twenty to one that he will get the main gene that determined his father’s mathematical powers; but he’s got— from his mother— so it looks as if her father’s inability to keep away from alcohol would crop up in him again; you must look out for that.”
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References
Bell, J., and Haldane, J.B.S., 1937, The linkage between the genes for colour-blindness and haemophilia in manProc. Roy. Soc. Ser. B123:119.
Boehnke, M., 1986, Estimating the power of a proposed linkage study: a practical computer simulation approachAm. J. Hum. Genet.39:513.
Buetow, K.H., 1991, Influence of aberrant observations on high-resolution linkage analysis outcomes.Am. J. Hum. Genet.49:985.
Cannon-Albright, L.A., Goldgar, D.E., Meyer, L.J., Lewis, C.M., Anderson, D.E., Fountain, J.W., Hegi, M.E., Wiseman, R.W., Petty, E.M., Bale, A.E., Olopade, O.I., Diaz, M.O., Kwiatkowski, D.J., Piepkorn, M.W., Zone, J.J., and Skolnick, M.H., 1992, Assignment of a locus for familial melanoma, MLM, to chromosome 9p13-p22Science258:1148.
Curtis, D., and Gurling, H., 1993, A procedure for combining two-point into a summary multipoint map, Hum. Hered. (in press).
Diirner, M., Greenberg, D.A., and Hodge, S.E., Inter-and intrafamilial heterogeneity: effective sampling strategies and comparison of analysis methodsAm. J. Hum. Genet.51:859.
Elston, R.C., and Stewart, J., 1971, A general model for the analysis of pedigree dataHum. Hered.21:523.
Elston, R.C., George, V.T., and Severtson, F., 1992, The Elston-Stewart algorithm for continuous genotypes and environmental factorsHum. Hered.42:9.
Goradia, T.M., Lange, K., Miller, P.L., and Nadkarni, P.M., 1992, Fast computation of genetic likelihoods on human pedigree dataHum. Hered.42:42.
Guo, S.W., and Thompson, E.A., 1992, A Monte Carlo method for combined segregation and linkage analysisAm. J. Hum. Genet.51:1111.
Haldane, J.B.S., 1987, The future of biology, in: “On Being The Right Size,” J. Maynard Smith, ed. Oxford University Press, Oxford.
Hall, J.M., Lee, M.K., Newman, B., Morrow, J.E., Anderson, L.A., Huey, B., and King, M.C., 1990, Linkage of early-onset familial breast cancer to chromosome 17q21Science250: 1684.
Hammersley, J.M., and Handscomb, D.C., 1983, “Monte Carlo Methods,” Chapman and Hall, New York.
Hodge, S.E., and Greenberg, D.A., 1992, Sensitivity of lod scores to changes in diagnostic statusAm. J. Hum. Genet.50:1053.
Humphries, P., Kenna, P., and Farrar, G.J., 1992, On the molecular genetics of retinitis pigmentosaScience256:804.
Keats, B.J.B., Sherman, S.L., and Ott, J., 1990, Human Gene Mapping 10.5 - Report of the committee on linkage and gene orderCytogenet. Cell Genet.55:387.
Kidd, K.K., and Ott, J., 1984, Power and sample size in linkage studiesCytogenet. Cell Genet.37:510.
Knowles, J.A., Vieland, V.J., and Gilliam, T.C., 1992, Perils of gene mapping with microsatellite markersAm. J. Hum. Genet.51:905.
Kong, A., Frigge, M., Irwin, M., and Cox, N., 1992, Importance sampling. I. Computing multi-model p-values in linkage analysisAm. J. Hum. Genet. 51:1413.
Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., and Newburg, L., 1987, MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populationsGenomics1:174.
Lange, K., Weeks, D., and Boehnke, M., 1988, Programs for pedigree analysis: MENDEL, FISHER, and dGENEGenet. Epidemiol.5:471.
Lange, K., and Matthysse, S., 1989, Simulation of pedigree genotypes by random walksAm. J. Hum. Genet.45:959.
Lange, K., and Sobel, E., 1991, A random walk method for computing genetic location scoresAm. J. Hum. Genet.49:1320.
Lathrop, G.M., Lalouel, J.M., Julier, C., and Ott, J., 1984, Strategies for multilocus linkage analysis in humansProc. Natl. Acad. Sci. USA81:3443.
Lathrop, G.M., Lalouel, J.M., and White, R.L., 1986, Calculation of human linkage maps: likelihood calculations for multilocus linkage analysisGenet. Epidemiol.3:39.
Liberman, U., and Karlin, S., 1984, Theoretical models of genetic map functionsTheor. Popul. Biol.25:331.
Lincoln, S.E., and Lander, E.S., 1992, Systematic detection of errors in genetic linkage dataGenomics14:604.
Morton, N.E., 1955, Sequential tests for the detection of linkageAm. J. Hum. Genet.7:277.
Morton, N.E., and Andrews, V., 1989, MAP — an expert system for multiple pairwise linkage analysisAnn. Hum. Genet.53:263.
Neuman, R.J., and Rice, J.P., Two-locus models of diseaseGenet. Epidemiol.9:347.
Ott, J., 1974, Estimation of the recombination fraction in human pedigrees: efficient computation of the likelihood for human linkage studiesAm. J. Hum. Genet.26:588.
Ott, J., 1977, Linkage analysis with misclassification at one locusdin. Genet.12:110.
Ott, J., and Falk, C.T., 1982, Epistatic association and linkage analysis in human familiesHum. Genet.62:296.
Ott, J., 1989, Computer-simulation methods in human linkage analysisProc. Natl. Acad. Sci. USA86:4175.
Ott, J., 1991, “Analysis of Human Genetic Linkage,” Johns Hopkins University, Baltimore.
Ott, J., 1992a, The future of multilocus linkage analysisAnn. Med.24 (in press).
Ott, J., 1992b, Detecting marker inconsistencies in human gene mappingHum. Hered. (in press).
Ott, J., 1992c, Strategies for characterizing highly polymorphic markers in human gene mappingAm. J. Hum. Genet.51:283.
Ott, J., and Lathrop, M.G., 1987, Estimating the position of a locus on a known map of lociCytogenet. Cell Genet.46:674 (abstr).
Ott, J., and Terwilliger, J.D., 1992, Assessing the evidence for linkage in psychiatric genetics, in: “Genetic Research in Psychiatry,” J. Mendlewicz and H. Hippius, eds. Springer, New York.
Ploughman, L.M., and Boehnke, M., 1989, Estimating the power of a proposed linkage study for a complex genetic traitAm. J. Hum. Genet.44:543.
Rao, C.R., 1989, “Statistics and truth,” Council of Scientific and Industrial Research, New Delhi.
Risch, N., 1990, Linkage strategies for genetically complex traits. II. The power of affected relative pairsAm. J. Hum. Genet.46:229.
Risch, N., Claus, E., and Giuffra, L., 1989, Linkage and mode of inheritance in complex traits, in: “Multipoint Mapping and Linkage Based Upon Affected Pedigree Members: Genetic Analysis Workshop 6,” R.C. Elston, M.A. Spence, S.E. Hodge, and J.W. MacCluer, eds. Liss, New York.
Schork, N.J., Boehnke, M., Terwilliger, J.D., and Ott, J., 1993, Two-locus linkage analysis: an efficient strategy for mapping complex genetic traits, (in preparation).
Speer, M., Terwilliger, J.D., and Ott, J., 1992, A chromosome-based method for rapid computer simulation in human genetic linkage analysisAm. J. Hum. Genet.51 (suppl):A202 (abstr).
Spence, M.A., Bishop, D.T., Boehnke, M., Elston, R.C., Falk, C., Hodge, S.E., Ott, J., Rice, J., Merikangas, K., and Kupfer, D., 1993, Methodological issues in linkageanalysesfor psychiatric disorders: secular trends, assortative mating, bilineal pedigrees (report of the MacArthur Foundation Network I Task Force on Methodological Issues),Hum. Hered.(in press).
Suarez, B.K., Van Eerdewegh, P., and Hampe, C.L., Detecting loci for oligogenic traits by linkage analysisAm. J. Hum. Genet.49 (suppl):14 (abstr).
Terwilliger, J.D., Weeks, D.E., and Ott, J., 1990, Laboratory errors in the reading of marker alleles cause massive reductions in lod score and lead to gross overestimates of the recombination fractionAm. J. Hum. Genet.47:A201 (abstr).
Terwilliger, J.D., Lehner, T., and Ott, J., 1991, Differential sex dependent penetrance of autosomal dominant diseases mimic linkage to the boundary of the pseudoautosomal regionAm. J. H14171. Genet.49 (suppl):362 (abstr).
Terwilliger, J.D., Speer, M., and Ott, J., A chromosome-based method for rapid computer simulation in human genetic linkage analysisGenet. Epidemiol.(in press).
Thomas, D.C., and Cortessis, V., 1992, A Gibbs sampling approach to linkage analysisHum. Hered.42:63.
Vieland, V.J., Hodge, S.E., and Greenberg, D.A., 1992, Adequacy of single-locus approximations for linkage analyses of oligogenic traitsGenet. Epidemiol.9:45.
Vionnet, N., Stoffel, M., Takeda, J., Yasuda, K., Bell, G.I., Zouali, H., Lesage, S., Velho, G., Iris, F., Passa, Ph., Froguel, Ph., and Cohen, D., 1992, Nonsense mutation in the glucokinase gene causes early-onset non-insulin-dependent diabetes mellitusNature356:721.
Weeks, D.E., Ott, J., and Lathrop, G.M., 1990, SLINK: a general simulation program for linkage analysisAm. J. Hum. Genet.47:A204 (abstr).
Weeks, D.E., 1991, Human linkage analysis: strategies for locus ordering, in: “Advanced Tech-niques in Chromosome Research,” K.W. Adolph, ed. Marcel Dekker, New York.
Weeks, D.E., Lathrop, G.M., and Ott, J., 1993, Multipoint mapping under genetic interferenceHum. Hered.(in press).
Xie, X., and Ott, J., 1990 Determining the effect of a change in affection status on the lod score.Am. J. Hum. Genet.47:A205 (abstr).
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Ott, J. (1993). Recent Developments in the Theoretical Aspects of Linkage Analysis. In: Majumder, P.P. (eds) Human Population Genetics. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-2970-5_12
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DOI: https://doi.org/10.1007/978-1-4615-2970-5_12
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