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Sensitive and Rapid Detection and Quantification of Nucleic Acids

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Methods in DNA Amplification
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Abstract

The polymerase chain reaction (PCR; Saiki et al 1988) is increasingly being used to quantify the number of copies of nucleic acid target in a sample. PCR quantification is important for many research and clinical applications such as analysis of gene expression (Gilliand et al 1990; Murphy et al 1990; Hoof et al 1991) or monitoring viral (Kellog et al 1990; Holodniy et. al 1991; Menzo et al 1992; Bavin et al 1993) and bacterial (Leigh et al 1993) infections. Due to the sensitivity of PCR, small variations in the reaction efficiency will result in significant differences in the amount of final product formed. A number of strategies have been developed which can minimize the variability of the reaction and hence increase the robustness of using PCR as a quantitative technique (Ferre 1992).

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References

  • Bavin PJ, Giles JA, Decry J, Crow PD, Griffith PD, Emery VC and Walker PG. Use of semi-quantitative PCR for human papillomavirus DNA type 16 to identify women with high grade cervical disease in a population presenting with a mildly dyskaryotic smear report. Br. J. Cancer 1993, 67: 602–5.

    Article  PubMed  CAS  Google Scholar 

  • Becker-Andre M and Hahlbrock K. Absolute mRNA quantification using the polymerase chain reaction (PCR). A novel approach by a PCR aided transcript titration assay (PATTY). Nucl. Acids Res. 1989, 17: 9437–46.

    Article  PubMed  CAS  Google Scholar 

  • Bosworth N and Towers P. Scintillation proximity assay. Nature 1989, 341: 167–68.

    Article  PubMed  CAS  Google Scholar 

  • Chelly J, Kaplan J-C, Marie P, Gautron S and Kahn A. Transcription of the dystrophin gene in human muscle and non-muscle tissues. Nature 1988, 333: 858–60.

    Article  PubMed  CAS  Google Scholar 

  • Dickover RE, Donovan RM, Goldstein E, Dandekar, Bush CE and Carlson JR. Quantitation of human immunodificiency virus DNA by using the polymerase chain reaction. J. Clin. Microbiol. 1990: 2130–33.

    Google Scholar 

  • Ferre F. Quantitative or semi-quantitative PCR: reality versus myth. PCR Methods Applic. 1992, 2:1–9.

    Article  CAS  Google Scholar 

  • Fox JC, Griffith PD and Emery VC. Quantification of human cytomeglavirus DNA using the polymerase chain reaction. J. Gen. Virol. 1992, 73: 2405–8.

    Article  PubMed  CAS  Google Scholar 

  • Gilliand G, Perrin S, Blanchard K and Bunn HF. Analysis of cytokine mRNA and DNA: detection and quantitation by competitive polymerase chain reaction. Proc. Natl. Acad. Sci. USA 1990, 87: 2725–29.

    Article  Google Scholar 

  • Holodniy M, Katzenstein DA, Sengupta S, Wang AM, Casipit C, Schwartz DH, Konrad M, Groves E and Merigan TC. Detection and quantification of human immunodeficiency virus RNA in patient serum by use of the polymerase chain reaction. J. Infec. Dis. 1991, 163: 862–66.

    Article  CAS  Google Scholar 

  • Hoof T, Riordan JR and Tummler B. Quantitation of mRNA by the kinetic polymerase chain reaction assay: a tool for monitoring P-glycoprotein gene expression. Anal. Biochem. 1991, 196: 161–69.

    Article  PubMed  CAS  Google Scholar 

  • Kellog DE, Sninsky JJ and Kwok S. Quantitation of HIV-1 proviral DNA relative to cellular DNA by the polymerase chain reaction. Anal. Biochem. 1990, 189: 202–8.

    Article  Google Scholar 

  • Kinoshita T, Imamura J, Nagai H and Shimotohno K. Quantification of gene expression over a wide range by the polymerase chain reaction. Anal. Biochem. 1992, 206: 231–35.

    Article  PubMed  CAS  Google Scholar 

  • Leigh TR, Gazzard BG, Rowbottom A and Collins JV. Quantitative and qualitative comparison of DNA amplification by PCR with immunofluorescence staining for diagnosis of Pneumocystis carinii pneumonia. J. Clin. Pathol. 1993, 46: 140–44.

    Article  PubMed  CAS  Google Scholar 

  • Melby PC, Darnell BJ and Tyron VV. Quantitative measurement of human cytokine gene expression by polymerase chain reaction. J. Immunol. Methods 1993, 159: 235–44.

    Article  PubMed  CAS  Google Scholar 

  • Menzo S, Bagnarelli P, Giacca M, Manzin A, Varaldo PE and Clementi M. Absolute quantitation of viremia in human immunodificiency virus infection by competitive reverse transcription and polymerase chain reaction. J. Clin. Microbiol. 1992, 30: 1752–57.

    PubMed  CAS  Google Scholar 

  • Murphy LD, Herzog CE, Rudick JB, Fojo AT and Bates SE. Use of polymerase chain reaction in the quantitation of mdr-1 gene expression. Biochemistry 1990, 29: 10351–56.

    Article  PubMed  CAS  Google Scholar 

  • Piatak M, Luk K, Williams B and Lifson JD. Quantitative competitive polymerase chain reaction for accurate quantitation of HIV DNA and RNA species. BioTechniques 1993, 14: 70–80.

    PubMed  Google Scholar 

  • Platzer C, Richter G, Uberla K, Muller W, Blocker H, Diamantstein T and Blankenstein T. Analysis of cytokine mRNA levels in interleukin-4-transgenic mice by quantitative polymerase chain reaction. Eur. J. Immunol. 1992, 22: 1179–84.

    Article  PubMed  CAS  Google Scholar 

  • Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB and Erlich HA. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 1988, 239: 487–91.

    Article  PubMed  CAS  Google Scholar 

  • Siebert PD and Larrick JW. PCR MIMICS: competitive DNA fragments for use as internal standards in quantitiative PCR. BioTechniques 1993, 14: 244–49.

    PubMed  CAS  Google Scholar 

  • Stieger M, Demolliere C, Ahlborn-Laake L,and Mous J. Competitive polymerase chain reaction assay for quantitation of HIV-1 DNA and RNA. J. Virol. Methods 1991, 34: 149–60.

    Article  PubMed  CAS  Google Scholar 

  • Wang AM, Doyle MV and Mark D. Quantitation of mRNA by the polymerase chain reaction. Proc. Natl. Acad. Sci. USA 1989, 86: 9717–21.

    Article  PubMed  CAS  Google Scholar 

  • Yang B, Yolken R and Viscidi R. Quantitative polymerase chain reaction by monitoring enzyme activity of DNA polymerase. Anal. Biochem. 1993, 208: 110–16.

    Article  PubMed  CAS  Google Scholar 

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© 1994 Springer Science+Business Media New York

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Cross, L., Potts, C., Anson, J.G. (1994). Sensitive and Rapid Detection and Quantification of Nucleic Acids. In: Rolfs, A., Weber-Rolfs, I., Finckh, U. (eds) Methods in DNA Amplification. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-2530-1_3

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  • DOI: https://doi.org/10.1007/978-1-4615-2530-1_3

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-0-306-44908-6

  • Online ISBN: 978-1-4615-2530-1

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