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Effects of Genetic Recombination and Population Subdivision on Nucleotide Sequence Variation in Drosophila ananassae

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Abstract

Genetic variation in regions of high and low recombination rates was quantified at the DNA sequence level for two natural Drosophila ananassae populations from Myanmar and India. Gene flow between these populations is limited. Levels of DNA sequence variation in regions of low crossing-over per physical length are significantly lower than in regions of intermediate to high crossing-over. Furthermore fixed between-population differences were found in low crossing-over regions but not in regions of high crossing-over. In the latter ones frequency shifts in polymorphisms between populations are more gradual. Simple models of directional selection in conjunction with hitchhiking explain these observations only partially. Local adaptive sweeps have to be postulated to account for the rapid genetic differentiation in regions of restricted recombination.

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References

  1. M. Aguadé, N. Miyashita and C. H. Langley. (1989). Reduced variation in theyellow-achaete-scuteregion in natural populations ofDrosophila melanogaster. Genetics 122607–615.

    Google Scholar 

  2. G. W. Beadle. (1932). A possible influence of spindle fibre on crossing over in Drosophila.Proc. Natl. Acad. Sci.USA18160–165.

    Article  PubMed  CAS  Google Scholar 

  3. D. J. Begun, and C. F. Aquadro. (1991). Molecular population genetics of the distal portion of theXchromosome in Drosophila: Evidence for genetic hitchhiking of theyellow-achaeteregion.Genetics 1291147–1158.

    PubMed  CAS  Google Scholar 

  4. D. J. Begun, and C. F. Aquadro. (1992). Levels of naturally occurring DNA polymorphism correlate with recombination rates inD. melanogaster. Nature 356519–520.

    Article  CAS  Google Scholar 

  5. D. J. Begun, and C. F. Aquadro. (1993). African and North American populations ofDrosophila melanogasterare very different at the DNA level.Nature 365548–550.

    Article  PubMed  CAS  Google Scholar 

  6. A. J. Berry, J. W. Ajioka and M. Kreitman. (1991). Lack of polymorphism on the Drosophila fourth chromosome resulting from selection.Genetics 1291111–1117.

    Google Scholar 

  7. I. R. Bock, and M. R. Wheeler. (1972). TheDrosophila melanogasterspecies group. Univ. Texas. Publ.72131–102.

    Google Scholar 

  8. B. Charlesworth, M. T. Morgan and D. Charlesworth. (1993). The effect of deleterious mutations on neutral molecular variation.Genetics 1341289–1303.

    PubMed  CAS  Google Scholar 

  9. T. Dobzhansky, and A. Dreyfus. (1943). Chromosomal aberrations in BrazilianDrosophila ananassae. Proc. Natl. Acad. Sci. USA 29301–305.

    Article  CAS  Google Scholar 

  10. C. W. Hinton. (1988). Formal relations betweenOmmutants and their suppressorsin Drosophila ananassae. Genetics 1201035–1042.

    CAS  Google Scholar 

  11. R. R. Hudson. (1982). Estimating genetic variability with restriction endonucleases.Genetics 100711–719.

    PubMed  CAS  Google Scholar 

  12. R. R. Hudson, M. Slatkin and W. P. Maddison. (1992). Estimation of levels of gene flow from DNA sequence data.Genetics 132583–589.

    PubMed  CAS  Google Scholar 

  13. F. M. Johnson. (1971). Isozyme polymorphisms inDrosophila ananassae:Genetic diversity among island populations in the South Pacific.Genetics 6877–95.

    PubMed  CAS  Google Scholar 

  14. N. L. Kaplan, R. R. Hudson and C. H. Langley. (1989). The “hitchhiking effect” revisited.Genetics 123887–899.

    Google Scholar 

  15. H. Kikkawa. (1938). Studies on the genetics and cytology ofDrosophila ananassae. Genetics 20458–516.

    Google Scholar 

  16. M. Kimura. (1983).The Neutral Theory of Molecular Evolution.Cambridge University Press, Cambridge (England).

    Book  Google Scholar 

  17. C. H. Langley, J. MacDonald, N. Miyashita and M. Aguadé. (1993). Lack of correlation between interspecific divergence and intraspecific polymorphism at thesuppressor of forkedregion inDrosophila melanogasterandDrosophila simulans. Proc. Natl. Acad. Sci. USA 901800–1803.

    Article  CAS  Google Scholar 

  18. M. Lynch, and T. J. Crease. (1990). The analysis of population survey data on DNA sequence variation.Mol. Biol. Evol. 7377–394.

    PubMed  CAS  Google Scholar 

  19. J. M. Martín-Campos, J. M. Comerón, N. Miyashita and M. Aguadé. (1992). Intraspecific and interspecific variation at they-ac-scregion ofDrosophila simulansandDrosophila melanogaster. Genetics 130805–816.

    Google Scholar 

  20. K. Mather. (1939). Crossing over and heterochromatin in chromosomes ofDrosophila melanogaster. Genetics 24413–435.

    CAS  Google Scholar 

  21. J. Maynard Smith, and J. Haigh. (1974). The hitchhiking effect of a favorable gene.Genet. Res. 2323–35.

    Article  Google Scholar 

  22. D. Moriwaki, and Y. N. Tobari. (1975).Drosophila ananassaepp. 513–535 inHandbook of GeneticsVol. 3, edited by R. C. King, Plenum, New York.

    Google Scholar 

  23. M. Nei, and W.-H. Li. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases.Proc. Nail. Acad. Sci. USA 765269–5273.

    Article  CAS  Google Scholar 

  24. J. T. Patterson, and W. S. Stone. (1952).Evolution in the Genus Drosophila.Macmillan, New York.

    Google Scholar 

  25. W. Stephan. (1989). Molecular genetic variation in the centromeric region of theXchromosome in threeDrosophila ananassaepopulations.II.TheOm(1D)Locus.Mol. Biol. Evol. 6624–635.

    PubMed  CAS  Google Scholar 

  26. W. Stephan, and C. H. Langley. (1989). Molecular genetic variation in the centromeric region of theXchromosome in threeDrosophila ananassaepopulations. I. Contrasts between thevermilionandforked loci. Genetics 12189–99.

    CAS  Google Scholar 

  27. W. Stephan, and S. J. Mitchell. (1992). Reduced levels of DNA polymorphism and fixed between-population differences in the centromeric region ofDrosophila ananassae. Genetics 1321039–1045.

    CAS  Google Scholar 

  28. W. Stephan, T. H. E. Wiehe and M. W. Lenz. (1992). The effect of strongly selected substitutions on neutral polymorphism: Analytical results based on diffusion theory.Theoret. Pop. Biol. 41237–254.

    Article  Google Scholar 

  29. F. Tajima. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.Genetics 123585–595.

    PubMed  CAS  Google Scholar 

  30. S. Tanda, A. E. Shrimpton, C. W. Hinton and C. H. Langley. (1989). Analysis of theOm(ID)locus inDrosophila ananassae. Genetics 123495–502.

    CAS  Google Scholar 

  31. S. Tavaré. (1984). Line-of-descent and genealogical processes and their applications in populations genetics models.Theoret. Pop. Biol. 26119–164.

    Article  Google Scholar 

  32. Y. N. Tobari. (1993). Linkage maps. In:Drosophila ananassae—Genetical and biological aspects(Y. N. Tobari, ed.). Japan Scientific Societies Press, Tokyo, and Karger, Basel.

    Google Scholar 

  33. Y. N. Tobari, B. Goñi, Y. Tomimura and M. Matsuda. (1993). Chromosomes. In:Drosophila ananassae—Genetical and biological aspects(Y. N. Tobari, ed.). Japan Scientific Societies Press, Tokyo, and Karger, Basel.

    Google Scholar 

  34. Y. Tomimura, M. Matsuda and Y. N. Tobari. (1993). Polytene chromosome variations ofDrosophila ananassaeand its relatives. In:Drosophila ananassae—Genetical and biological aspects(Y. N. Tobari, ed.). Japan Scientific Societies Press, Tokyo, and Karger, Basel.

    Google Scholar 

  35. B. S. Weir, and C. C. Cockerham. (1984). Estimating F-statistics for the analysis of population structure.Evolution 381358–1370.

    Article  Google Scholar 

  36. S. Wright. (1951). The genetical structure of populations.Ann. Eugenics 15323–354.

    Google Scholar 

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© 1994 Springer Science+Business Media Dordrecht

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Stephan, W. (1994). Effects of Genetic Recombination and Population Subdivision on Nucleotide Sequence Variation in Drosophila ananassae . In: Golding, B. (eds) Non-Neutral Evolution. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-2383-3_5

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  • DOI: https://doi.org/10.1007/978-1-4615-2383-3_5

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-0-412-05391-7

  • Online ISBN: 978-1-4615-2383-3

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