Skip to main content

Molecular Analysis of the Human GAR1 Gene

A Candidate Gene for Retinal Degeneration

  • Chapter
Degenerative Diseases of the Retina

Abstract

A bovine glutamic acid rich protein (garp) was first reported as a soluble protein of unknown function which copurified with cGMP phosphodiesterase from rod outer segments (1). Characterization of bovine retina cDNA clones encoding garp identified a 65 kD protein with a high overall glutamate composition (24%), including one 109 amino acid domain near the C-terminus especially enriched (68/109 residues) in glutamate. This domain contained four repeats of a glutamate-rich 11 amino acid residue sequence (undecapeptide) and two repeats of a 26 amino acid peptide also rich in glutamic acid. Antibodies against a decamer corresponding to the undecapeptide from the glutamate rich region recognized a 65 kD protein in crude rod outer segment extracts. Northern analysis of poly A+ RNA from a variety of bovine tissues identified a 2.4 kb transcript only in the retina sample, suggesting that the expression may be retina-specific. More recently it was shown that garp is part of the 240 kD integral membrane protein complex that forms part of the cGMP-gated cation channel of bovine rod outer segments, thus identifing it as a third subunit (y) of the channel (2).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

eBook
USD 16.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Sugimoto, Y., Yatsunami, K., Tsujimoto, M., Khorana, H.G., and Ichikawa, A. (1991). The amino acid sequence of a glutamic-acid rich protein from bovine retina as deduced from the cDNA sequence. Proc. Natl. Acad. Sci. USA 88:3116–3119.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  2. Illing, M., Colville, C.A., Williams, A.J., and Molday, R.S. (1994). Sequencing, cloning, and characterization of a third subunit of the cyclic nucleotide-gated channel complex of rod outer segments. ARVO ABSTRACTS. Invest. Ophthalmol. Vis. Sci. Suppl., vol 35, 1022.

    Google Scholar 

  3. Cook, N.J., Hanke, W., and Kaupp, U.B. (1987). Identification, purification, and functional reconstitution of the cyclic GMP-dependent channel from rod photoreceptors. Proc. Natl. Acad. Sci. USA. 84:585–589.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  4. Kaupp, U.B., Niidome, T., Tanabe, T., Terada, S., Bönigk, W., Stühmer, Cook, N.J., Kangawa, K., Matsuo, H., Hirose, T., Miyata, T., and Numa, S. (1989). Primary structure and functional expression from complementary DNA of the rod photoreceptor cyclic GMP-gated channel. Nature 342:762–766.

    Article  CAS  PubMed  Google Scholar 

  5. Pittler, S.J., Lee, A.K., Altherr, M.R., Howard, T.A., Seldin, M.F., Hurwitz, R.L., Wasmuth, J.J., and Baehr, W. (1992). Primary structure and chromosomal localization of human and mouse rod photoreceptor cGMP-gated cation channel. J. Biol. Chem. 267:6257–6262.

    CAS  PubMed  Google Scholar 

  6. Dhallan, R.S., Macke, J.P., Eddy, R.L., Shows, T.B., Reed, R.R., Yau, K.-W., and Nathans, J. (1992). Human rod photoreceptor cGMP-gated channel: amino acid sequence, gene structure, and functional expression. J. Neurosci. 12:3248–3256.

    CAS  PubMed  Google Scholar 

  7. McGee, T.L., Lin, D., Berson, E.L., and Dryja, T.P. (1994). Defects in the rod cGMP-gated channel gene in patients with retinitis pigmentosa. ARVO ABSTRACTS. Invest. Ophthalmol. Vis. Sci. Suppl., vol 35, 2154.

    Google Scholar 

  8. Chen, T.-Y, Peng, Y.-W., Dhallan R.S., Ahamed, B., Reed, R.R., and Yau, K.-W. (1993). A new subunit of the cyclic nucleotide-gated cation channel in retinal rods. Nature 362:764–767.

    Article  CAS  PubMed  Google Scholar 

  9. Chen, T.-Y, Illing, M., Molday, L.L., Hsu, Y-T, Yau, K.-W, and Molday, R.S. (1994). Subunit 2 (or β) of retinal rod cGMP-gated cation channel is a component of the 240-kDa channel-associated protein and mediates Ca+2-calmodulin modulation. Proc. Natl. Acad. Sci. USA 91:11757–11761.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  10. Ardell, M.D., Makhija, A.K., Oliveira, L., Miniou, P., Viegas-Pequignot, E., and Pittler, S.J. cDNA, gene structure, and chromosomal localization of human GAR1 (CNCG3L), a homolog of the third subunit of bovine photoreceptor cGMP-gated channel. (1995) In press, Genomics.

    Google Scholar 

  11. Gordon, S.E., Brautigan, D.L., and Zimmerman, A.L. (1992). Protein phosphatases modulate the apparent agonist affinity of the light-regulated ion channel in retinal rods. Neuron 9:739–748.

    Article  CAS  PubMed  Google Scholar 

  12. Liu, M.-Y., Li, J., and Yau, K.W. (1994). Phosphorylation of the N-terminal domain of human rod cyclic nucleotide-gated channel by protein kinase C and the cAMP-dependent protein kinase. ARVO ABSTRACTS. Invest. Ophthalmol. Vis. Sci. Suppl. 35:1474.

    Google Scholar 

  13. Bennett, N., Ildefonse, M., Crouzy, S., Chapron, Y, and Clerc, A. (1989). Direct activation of cGMP-de-pendent channels of retinal rods by the cGMP phosphodiesterase. Proc. Natl. Acad. Sci. USA 86:3634–3638.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  14. Cook, N.J., Molday, L.L., Reid, D., Kaupp, U.B., and Molday, R.S. (1989). The cGMP-gated channel of bovine rod photoreceptors is localized exclusively in the plasma membrane. J. Biol. Chem. 264:6996–6999.

    CAS  PubMed  Google Scholar 

  15. Ahmad, I., Redmond, L.J., and Barnstable, C.J. (1990). Developmental and tissue-specific expression of the rod photoreceptor cGMP-gated ion channel gene. Biochem. Biophys. Res. Commun. 173:463–470.

    Article  CAS  PubMed  Google Scholar 

  16. Schachat, A.P. and Maumenee, I.H. (1982). The Bardet-Biedl syndrome and related disorders. Arch. Ophthalmol. 100:285–288.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1995 Springer Science+Business Media New York

About this chapter

Cite this chapter

Ardell, M.D., Makhija, A., Pittler, S.J. (1995). Molecular Analysis of the Human GAR1 Gene. In: Anderson, R.E., LaVail, M.M., Hollyfield, J.G. (eds) Degenerative Diseases of the Retina. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-1897-6_37

Download citation

  • DOI: https://doi.org/10.1007/978-1-4615-1897-6_37

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4613-5774-2

  • Online ISBN: 978-1-4615-1897-6

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics