Abstract
In the past several years we have witnessed a significant upsurge in the use of fluorescence in biochemical systems. Until recently, fluorescence spectroscopy was mainly a research tool in biochemistry and biophysics. Today, we see fluorescence being used to determine the DNA sequence of genomes, discover new drugs at unprecedented speed by high throughput screening (HTS) and simultaneously watch thousands of genes turn on and off using DNA arrays or gene chips. Because of the sensitivity of fluorescence detection, and the expense and difficulties of handling radioactive substances, there is a continuing trend towards fluorescencebased measurements and tests. As an example, in the medical field, enzymelinked immunoassays (ELISA) and fluorescence polarization immunoassays have become standard diagnostic tests. In cell biology, the movement and localization of intracellular substances are monitored by fluorescence microscopy. Additionally, cell identification and sorting is accomplished by flow cytometry.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsPreview
Unable to display preview. Download preview PDF.
References
Albisson, B., Kubista, M., Norden, B., and Thulstrup, E.W., 1989,J. Phys. Chem. 93:6646.
Ansorge, W., Sproat, B. S., Stegemeann, J., and Schwager, C, 1986,J. Biochem. Biophys.Methods 13:315.
Baird, G. S., Zacharias, D. A., and Tsien, R. Y., 2000,Proc. Nati Acad. Sci. USA 97:11984.
Brochon, J.-C, Wahl, P., Monnuese-Doublet, M.-O., and Olomucki, A., 1977,Biochemistry 16:4594.
Bruno, J. Horrocks, W. DeW., and Zauhar, R. J., 1992,Biochemistry 31:7016.
Burstein, E.A., Vedenkina, N.S., and Ivkova, M.N., 1974,Photochem. Photobiol 18:263.
Callis, P.R., 1997,Methods Enzymol. 278:113.
Chalfie, M., Tu, Y., Euskirchen, C, Ward, W. W., and Prasher, D. C, 1994,Science 263:802.
Chan, A. W. S., Chong, K. Y., Martinovich, C, Simerly, C, and G. Schatten, 2001,Science 291:309.
Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X. C, Stern, D., Winkler, J., Lockhart, D. J., Morris, M. S., and Fodor, S. P. A., 1996,Science 274:610.
Crameri, A., Whitehorn, E. A., Tate, E., and Stemmer, W. P. C, 1996,Nature Biotechnol. 14:315.
Cubitt, A. B., Heim, R., Adams, S. R., Boyd, A. E., Gross, L. A., and Tsien, R. Y., 1995,Trends Biochem. Soc. 20:448.
Czarnik, A. W. (ed.), 1993,Fluorescent Chemosensors for Ion and Molecule Recognition, American Chemical Society, Washington, D. C.
Demas, J. N. and DeGraff, B. A., 1994, Design and applications of highly luminescent transition metal complexes. InTopics in Fluorescence Spectroscopy, Volume 4, Probe Design and Chemical Sensing (J. R. Lakowicz, ed.), Plenum Press, New York, pp. 71-107.
Demchenko, A.P., Apell, H.-J., Sturmer, W., and Fedderson, B., 1993,Biophys. Chem. 48:135.
Eftink, M. R., 1990,Methods Biochem. Anal. 35:117.
Eftink, M.R., Selvidge, L.A., Callis, P.R., and Rehms, A. A., 1990,J. Phys. Chem. 94:3469.
Ehrig, T., O'Kane, D. J., and Pendergast, F. G., 1995,FEBSLett. 367:163.
Fradkov, A. F., Chen, Y., Ding, L., Barsova, E. V., Matz, M.V., and Lukyanov, S. A., 2000,FEBS Lett. 479:127.
Friedman, A. E., Chambron, J.-C, Sauvage, J.-P., Turro, N. J., and Barton, J. K., 1990,J. Am. Chem. Soc. 112:4960.
Gafni, A. and Brand, L., 1976,Biochemistry 15:3165.
Glazer, A.N. and Stryer, L., 1984,Trends Biochem. Soc.423.
Glazer, A. N., Peck, K., and Matheis, R. A., 1990,Proc. Natl. Acad. Sci. USA 87:3851.
Guo, X.-Q., Castellano, F. N., Li, L., and Lakowicz, J. R., 1998,Anal. Chem. 70:632.
Haugland, R. P., 1996,Handbook of Fluorescent Probes and Research Chemicals, Molecular Probes, Inc., Eugene, Oregon.
Heim, R and Tsien, R. Y., 1996,Curr. Biol. 6:178.
Hemmila, I. A., 1992,Applications of Fluorescence in Immunoassays, John Wiley & Sons, New York.
Holzwarth, A.R., Wendler, J., and Suter, G.W., 1987,Biophys. J. 51:1.
Horn, C. and Wimmer, E. A., 2000,Dev. Genes Evol. 210:630.
Horrocks, W. DeW., and Sudnick, D. R., 1981,Acc. Chem. Res. 14:384.
Ichnose, N., Schwedt, G., Schnepel, F. M., and Adachi, K., 1987,Fluorometric Analysis in Biomedical Chemistry, John Wiley & Sons, New York.
Ju, J., Ruan, C, Fuller, C. W., Glazer, A. N., and Mathies, R. A., 1995,Proc. Natl. Acad. Sci. USA 92:4347.
Ju, J., Glazer, A. N., and Mathies, R. A., 1996,Nat. Med. 2:246.
Kerr, R., Lev-Ram, V., Baird, G., Vincent, P., Tsien, R. Y., Schafer W. R., 2000,Neuron 26:583.
Kinnumen, P. K. J., Koiv, A., and Mustonen, P., 1993, Pyrene-labeled lipids as fluorescent probes in studies on biomembrandes and membrane models. InFluorescence Spectroscopy: New Methods and Applications(O. S. Wolfbeis, ed.), Springer-Verlag, New York, pp. 159-171.
Kobasyashi, Y., Amitani, K., Watatnabe, G., and Miyai, K., 1979,Clin. Chim. Acta 37:1924.
Kotarsky, K., Owman, C, and Olde, B, 2001,Anal. Biochem. 288:209.
Kronick, M.N. and Grossman, P.D., 1983,Clin. Chem. 29:1582.
Kronick, M.N., 1986,J. Immun. Methods 92:1-13.
Lakowicz, J. R. (ed.), 1994,Topics in Fluorescence Spectrocopy, Volume 4, Probe Design and Chemical Sensing, Plenum Press, New York.
Lakowicz, J. R. and Gryczinski, I., 1991, Frequency-domain fluorescence Spectroscopy. InTopics in Fluorescence Spectroscopy, Volume 1, Techniques (J. R. Lakowicz. ed.), Plenum Press, New York,pp. 293-355.
Lamture, J. B. and Wensel, T. G., 1993,Tetrahedron Lett. 34:4141.
Lamture, J. B. and Wensel, T. G., 1995,ßioconjug. Chem. 6:88.
Li, H. Y., Ng, E., Lee, S. M., Kotaka, M., Tsui, S. K., Lee, C. Y., Fung K.P., and Waye M. M.,2OO1,J. Cell Biochem. 80:293.
Li, M. and Selvin, P. R., 1995,J. Am. Chem. Soc. 117:8132.
Longworth, J. W., 1971, Luminescence of polypeptides and proteins. InExcited States of Proteins and Nucleic Acids (R. F. Steiner and I. Weinryb, eds.), Plenum Press, New York, pp. 319-484.
MacColl, R. and Guard-Friar, D., 1987, Phycobiliproteins, CRC Press, Boca Raton, Florida.
Miyawaki, A., Llopis, J., Heim, R., McCaffery, J. M., Adams, J. A., Ikura, M., and Tsien, R. Y., 1997, Nature 388:882.
Nguyen, D. C, Keller, R. A., Jett, J. H., and Martin, J. C, 1987, Anal. Chem. 59:2158.
Oi, V. T., Glazer, A. N., and Stryer, L., 1982, J. Cell Biol. 93:981.
Ormo, M., Cubitt, A.B., Kallio, K., Gross, L. A., Tsien, R. Y., and Remington, S. J., 1996, Science 273:1392.
Ozinskas, A. J., 1994, Principles of fluorescence immunoassay. In Topics in Fluorescence Spectroscopy, Volume 4, CRC Press, Boca Raton, Florida.
Pendergast, F. G., Meyer, M., Carlson, G. L., Iida, S., and Potter, J. D., 1983, J. Biol. Chem. 258:7541.
Rayner, D.M. and Szabo, A.G., 1978, Can. J. Chem. 56:743.
Rye, H. S., Yue, S., Wemmer, D. E., Quesada, M. A., Haugland, R. P., Mathies, R. A., and Glazer, A. N., 1992, Nucleic Acids Res. 20:2803.
Richardson, F. S., 1982, Chem. Rev. 82:541.
Robbins, R.J., Fleming, G.R., Beddard, C.S., Robinson, G.W., Thistlethwaite, P.J., and Woolfe, G.J., 1980, J. Am. Chem. Soc. 102:6271.
Sabbatini, N. and Guardigli, M., 1993, Coord. Chem. Rev. 123:201.
Sanger, F., Nicklen, S., and Coulson, A. R., 1977, Proc. Natl. Acad. Sci. USA 74:5463.
Schena, M., Shalon, D., Davis, R. W., Brown, P. O., 1996, Science 270:467.
Schröck, E., du Manoir, S., Veldman, T., Schoell, B., Wienberg, J., Ferguson-Smith, M. A., Ning, Y., Ledbetter, D. H., Bar-Am, I., Soenksen, D., Garini, Y., and Reid, T., 1996, Science 273:494.
Slavik, J., 1982, Biochim. Biophys. Acta 694:1.
Speicher, M. R., Ballard, S. G., and Ward, D. C, 1996, Nat. Genet. 12:368.
Steiner, R. R. and Kubota, Y., 1983, Fluorescent dye-nucleic acid complexes. In Excited States of Biopolymers (R. F. Steiner. ed.), Plenum Press, New York, pp. 203-254.
Stenroos, K., Hurskainen, P., Eriksson, S., Hemmila, I., Blomberg, K., and Lindqvist, C., 1998, Cytokine 10:495.
Suh, D. and Chaires, J. B., 1995, Bioorg. Med. Chem. 3:723-728.
Szabo, A.G. and Rayner, D. M., 1980, J. Am. Chem. Soc. 102:554.
Szmacinski, H., Terpetschnig, E., and Lakowicz, J. R., 1996, Biophys. Chem. 62:109.
Terpetschnig, E., Szmacinski, H., and Lakowicz, J. R., 1997, Methods Enzymol. 278:295.
The International Human Genome Mapping Consortium, 2001, Nature 409:934.
Thompson, R. B., 1994, Red and near-infrared fluorometry. In Topics in Fluorescence Spectroscopy, Volume 4, Probe Design and Chemical Sensing (J. R. Lakowicz, ed.), Plenum Press, New York, pp. 151-222.
Tsukamoto T., Hashiguchi, N., Janicki, S.M., Tumbar, T., Belmont A.S., and Spector D. L., 2000, Nat. Cell Biol. 2:871.
Vaccari, S., Benci, S., Peracchi, A., and Mozarelli, A., 1997, J. Fluoresc. 7:135S.
Velick, S. F., 1958, J. Biol. Chem, 233: 1455.
Venter, J. C., et al, 2001, Science 291: 1304-1351.
Vo-Dinh, T., Sepaniak, M. J., Griffin, G. D., and Alarie, J. P., 1993, Immunomethods 38:85.
Waggoner, A., 1995, Methods Enzymol. 246:363.
Wall, M. A., Socolich, M., and Ranganathan, R. 2000, Nat. Struct. Biol. 7:1133.
Weber, G. and Farris, F. J., 1979, Biochemistry 18:3075.
Wolfbies, O. S., 1991, Oxygen sensors. In Fiber Optic Chemical Sensors and Biosensors, Vol. II. (O. S. Wolfbeis, ed.), CRC Press, Boca Raton, Florida, pp. 15-93.
Xiao, G.-S. and Zhou, J.-M., 1996, Biochim. Biophys. Acta 1294:1.
Zacharias, D. A., Baird, G. S., and Tsien, R. Y., 2000, Curr. Opin. Neurobiol. 10:416.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2002 Springer Science+Business Media New York
About this chapter
Cite this chapter
Tolosa, L., Nowaczyk, K., Lakowicz, J. (2002). Fluorescence Probes for Biochemical Systems. In: Andrews, D.L., Demidov, A.A. (eds) An Introduction to Laser Spectroscopy. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-0727-7_5
Download citation
DOI: https://doi.org/10.1007/978-1-4615-0727-7_5
Publisher Name: Springer, Boston, MA
Print ISBN: 978-1-4613-5213-6
Online ISBN: 978-1-4615-0727-7
eBook Packages: Springer Book Archive