Skip to main content

Evaluating Power Behavior of Nonparametric Combination Testing Methodology After Generalized Procrustes Analysis and Under Different Correlation Structures

  • Chapter
  • First Online:
  • 952 Accesses

Part of the book series: SpringerBriefs in Statistics ((BRIEFSSTATIST,volume 15))

Abstract

In this chapter we investigate the effect of Generalized Procrustes Analysis (GPA) superimposition on the power of NonParametric Combination (NPC) testing methodology. Through a simulation study, we show how GPA alters power function. Since GPA superimposition provides permutationally non-equivalent transformations, NPC tests are approximate. Moreover, we examine the case of correlated landmarks. Through a toy example, considering hypothetical configurations representing some 3D monkey skulls, we compare the behavior of traditional tests with that of nonparametric permutation tests in this particular case. Finally we introduce paired data problem that, in the context of shape analysis, relates to the study of symmetric structures. Inferential techniques for symmetric shapes are presented.

We call a thing big or little with reference to what it is wont to be, as we speak of a small elephant or a big rat.”.

On Growth and Form, 1917D’

Arcy Thompson

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  • Brombin C (2009) A nonparametric permutation approach to statistical shape analysis, ph.D. thesis. Padova, Italy: University of Padova

    Google Scholar 

  • Brombin C, Salmaso L, Villanova C (2009) Multivariate permutation shape analysis with application to aortic valve morphology. In: et al. VC (ed) Stereology and Image Analysis. Ecs10: Proceeding of the 10th European Conference of ISS, The MIRIAM Project Series, ESCULAPIO Pub. Co., Bologna, Italy, 2009., vol 4, pp 442–449

    Google Scholar 

  • Frost SR, Marcus LF, Bookstein FL, Reddy DP, Delson E (2003) Cranial allometry, phylogeography, and systematics of large-bodied papionins (primates: Cercopithecinae) inferred from geometric morphometric analysis of landmark data. The Anatomical Record (Part A) 275A:1048–1072

    Article  Google Scholar 

  • Good P (2000) Permutation tests: a practical guide to resampling methods for testing hypotheses. Springer, New York

    Book  MATH  Google Scholar 

  • Goodall CR (1991) Procrustes methods in the statistical analysis of shape. Journal of the Royal Statistical Society, Series B 53:285–339

    MathSciNet  MATH  Google Scholar 

  • Klingenberg CP, McIntyre GS (1998) Geometric morphometrics of developmental instability: analyzing patterns of fluctuating asymmetry with procrustes methods. Evolution 52:1363–1375

    Article  Google Scholar 

  • Klingenberg CP, Barluenga M, Meyer A (2002) Shape analysis of symmetric structures: quantifying variation among individuals and asymmetry. Evolution 56:1909–1920

    Google Scholar 

  • Mardia KV, Bookstein FL, Moreton IJ (2000) Statistical assessment of bilateral symmetry of shapes. Biometrika 87:285–300

    Article  MathSciNet  MATH  Google Scholar 

  • Palmer AR (1996) From symmetry to asymmetry: Phylogenetic patterns of asymmetry variation in animals and their evolutionary significance. Proceedings of the National Academy of Sciences (USA) 93:14279–14286

    Article  Google Scholar 

  • Palmer AR, Strobeck C (1997) Fluctuating asymmetry and developmental stability: Heritability of observable variation vs. heritability of inferred cause. Journal of Evolutionary Biology 10:39–49

    Article  Google Scholar 

  • Pesarin F (1997) An almost exact solution for the multivariate behrens-fisher problem. Metron 55(3–4):85–100

    MathSciNet  MATH  Google Scholar 

  • Pesarin F (2001) Multivariate Permutation tests: with application in Biostatistics. John Wiley & Sons, Chichester-New York

    Google Scholar 

  • Pesarin F, Salmaso L (2010) Permutation Tests for Complex Data: Theory, Applications and Software. Wiley

    Book  Google Scholar 

  • Robertson T, Wright FT, Dykstra RL (1988) Order Restricted Statistical Inference. Wiley, Chichester

    MATH  Google Scholar 

  • Rohlf FJ (2000) Statistical power comparisons among alternative morphometric methods. American Journal of Physical Anthropology 111:463–478

    Article  Google Scholar 

  • Rohlf FJ (2008) TPStri, Explore shapes of triangles, version 1.25. Department of Ecology and Evolution, State University of New York at Stony Brook

    Google Scholar 

  • Savriama Y, Klingenberg CP (2006) Geometric morphometrics of complex symmetric structures: Shape analysis of symmetry and asymmetry with procrustes methods. In: Barber S, Baxter PD, Mardia KV, Walls RE (eds) Interdisciplinary Statistics and Bioinformatics, Leeds University Press, pp 158–161, ISBN 0-85316-252-2

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media New York

About this chapter

Cite this chapter

Brombin, C., Salmaso, L. (2013). Evaluating Power Behavior of Nonparametric Combination Testing Methodology After Generalized Procrustes Analysis and Under Different Correlation Structures. In: Permutation Tests in Shape Analysis. SpringerBriefs in Statistics, vol 15. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-8163-8_3

Download citation

Publish with us

Policies and ethics