Abstract
We propose a time-adaptive finite element method for the solution of a parameter identification problem for ODE which describes dynamical systems of biological models. We present framework of a posteriori error estimate in the Tikhonov functional, in Lagrangian, and in the reconstructed function. We also present time-mesh relaxation property in the adaptivity and formulate the time-mesh refinement recommendation and an adaptive algorithm which can be used to find optimal values of the distributed parameters in biological models.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
B.M. Adams, H.T. Banks, M. Davidian, H.-D. Kwon, H.T. Tran, S.N. Wynne and E.S. Rosenberg, HIV dynamics: Modeling, data analysis, and optimal treatment protocols, Journal of Computational and Applied Mathematics, 184, 10–49, 2005.
M. Asadzadeh and L. Beilina, A posteriori error analysis in a globally convergent numerical method for a hyperbolic coefficient inverse problem, Inverse Problems, 26, 115007, 2010.
A.B. Bakushinskii and M.Y. Kokurin, Iterative Methods for Approximate Solution of Inverse Problems, Springer, New York, 2004.
A.B. Bakushinsky, M.Y. Kokurin, A. Smirnova, Iterative Methods for Ill-posed Problems, Walter de Gruyter GmbH&Co., Berlin, 2011.
W. Bangerth and A. Joshi, Adaptive finite element methods for the solution of inverse problems in optical tomography, Inverse Problems, 24, 034011, 2008.
R. Becker and R. Rannacher, An optimal control approach to a posteriori error estimation in finite element method, Acta Numerica, 10, 1–102, 2001.
L. Beilina, Adaptive finite element/difference method for inverse elastic scattering waves, Applied and Computational Mathematics, 1, 158–174, 2002.
L. Beilina, Adaptive finite element method for a coefficient inverse problem for the Maxwell’s system, Applicable Analysis, 90, 1461–1479, 2011.
L. Beilina and C. Clason, An adaptive hybrid FEM/FDM method for an inverse scattering problem in scanning acoustic microscopy, SIAM Journal on Scientific Computing, 28, 382–402, 2006.
L. Beilina and C. Johnson, A hybrid FEM/FDM method for an inverse scattering problem. In Numerical Mathematics and Advanced Applications - ENUMATH 2001, Springer-Verlag, Berlin, 2001.
L. Beilina and C. Johnson, A posteriori error estimation in computational inverse scattering, Mathematical Models and Methods in Applied Sciences, 15, 23–37, 2005.
L. Beilina and M.V. Klibanov, A posteriori error estimates for the adaptivity technique for the Tikhonov functional and global convergence for a coefficient inverse problem, Inverse Problems, 26, 045012, 2010.
L. Beilina and M.V. Klibanov, Reconstruction of dielectrics from experimental data via a hybrid globally convergent/adaptive inverse algorithm, Inverse Problems, 26, 125009, 2010.
L. Beilina and M.V. Klibanov, Synthesis of global convergence and adaptivity for a hyperbolic coefficient inverse problem in 3D, Journal of Inverse and Ill-posed Problems, 18, 85–132, 2010.
L. Beilina and M.V. Klibanov, Relaxation property of the adaptivity technique for some ill-posed problems, preprint, Department of Mathematical Sciences, Chalmers University of Technology and Göteborg University, ISSN 1652–9715; nr 2012:4.
L. Beilina and M.V. Klibanov, Approximate Global Convergence and Adaptivity for Coefficient Inverse Problems, Springer, New York, 2012.
L. Beilina, M.V. Klibanov and M.Yu Kokurin, Adaptivity with relaxation for ill-posed problems and global convergence for a coefficient inverse problem, Journal of Mathematical Sciences, 167, 279–325, 2010.
V.A. Chereshnev, S.I. Bazhan, B.A. Bakhmetev, I.A. Gainova and G.A. Bocharov, Systems analysis of HIV infection pathogenesis, Biology Bulletin Reviews, 132(2), 115–140, 2012.
K. Eriksson, D. Estep and C. Johnson,Calculus in Several Dimensions, Springer, Berlin, 2004.
T. Feng, N. Yan and W. Liu, Adaptive finite element methods for the identification of distributed parameters in elliptic equation, Advances in Computational Mathematics, 29, 27–53, 2008.
R. Fletcher, Practical Methods of Optimization, John Wiley and Sons, Ltd, New York, 1986.
A. Griesbaum, B. Kaltenbacher and B. Vexler, Efficient computation of the Tikhonov regularization parameter by goal-oriented adaptive discretization, Inverse Problems, 24, 025025, 2008.
B. Kaltenbacher, A. Krichner and B. Vexler, Adaptive discretizations for the choice of a Tikhonov regularization parameter in nonlinear inverse problems, Inverse Problems, 27, 125008, 2011.
B. Kaltenbacher, A. Neubauer and O. Scherzer, Iterative Regularization Methods for Nonlinear Ill-Posed Problems, de Gruyter, New York, 2008.
N.A. Koshev and L. Beilina, A posteriori error estimates for the Fredholm integral equation of the first kind, accepted to book series Springer Proceedings in Mathematics, 2012.
O.A. Ladyzhenskaya, Boundary Value Problems of Mathematical Physics, Springer Verlag, Berlin, 1985.
R. Medzhitov and D. Littman, HIV immunology needs a new direction: Commentary, Nature, 455(7213), 591, 2008.
A.N. Tikhonov and V.Y. Arsenin, Solutions of Ill-Posed Problems, Winston and Sons, Washington, DC, 1977.
A.N. Tikhonov, A.V. Goncharsky, V.V. Stepanov and A.G. Yagola, Numerical Methods for the Solution of Ill-Posed Problems, Kluwer, London, 1995.
Acknowledgements
This research was supported by the Swedish Research Council, the Swedish Foundation for Strategic Research (SSF) through the Gothenburg Mathematical Modelling Centre (GMMC), the Swedish Institute, Visby Program, the program of the Russian Academy of Sciences “Basic Research for Medicine,” and the Russian Foundation for Basic Research (Grant 11-01-00117).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2013 Springer Science+Business Media, LLC
About this paper
Cite this paper
Beilina, L., Gainova, I. (2013). Time-Adaptive FEM for Distributed Parameter Identification in Biological Models. In: Beilina, L. (eds) Applied Inverse Problems. Springer Proceedings in Mathematics & Statistics, vol 48. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-7816-4_3
Download citation
DOI: https://doi.org/10.1007/978-1-4614-7816-4_3
Published:
Publisher Name: Springer, New York, NY
Print ISBN: 978-1-4614-7815-7
Online ISBN: 978-1-4614-7816-4
eBook Packages: Mathematics and StatisticsMathematics and Statistics (R0)