Skip to main content

Tracking Cortical Surface Deformation Using Stereovision

  • Conference paper
  • First Online:
Mechanics of Biological Systems and Materials, Volume 5

Abstract

Tracking brain deformation is important for the understanding of brain biomechanical properties. However, accurate deformation tracking may be challenging especially in vivo. We present a completely noninvasive technique to track cortical surface deformation using intraoperative stereovision during open cranial neurosurgery. A sequence of stereo images was acquired to capture motion of the exposed cortical surface due to blood pressure pulsation during multiple respiration cycles for patients undergoing brain tumor resection surgery. Rigid registration was performed between the first and subsequent frames using features outside the craniotomy to compensate for accidental motion of the surgical microscope. A nonrigid registration based on optical flow was performed next between the first and subsequent frames. A reference image was then generated using pixel displacements averaged across an integer multiple of respiration cycles to serve as a reference state based on which a dense displacement field was determined for each image frame. The resulting displacement field was then locally smoothed to minimize noise, and was further spatially differentiated to compute in-plane surface strain using deformation gradient. The technique offers an effective approach to track deformation of soft tissue surface as long as sufficient tracking features are available, which is useful for soft tissue biomechanical characterization.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Fan X, Ji S, Hartov A, Roberts D, Paulsen K (2012) Registering stereovision surface with preoperative magnetic resonance images for brain shift compensation In: Holmes DR III, Wong KH (eds) Medical imaging 2012: image-guided procedures, robotic interventions, and modeling. Proceedings of SPIE, vol 8316 (SPIE, Bellingham, WA 2012) 83161C

    Google Scholar 

  2. Sun H, Lunn KE, Farid H, Wu Z, Roberts DW, Hartov A, Paulsen KD (2005) Stereopsis-guided brain shift compensation. IEEE Trans Med Imag 24(8):1039–1052

    Article  Google Scholar 

  3. Paul P, Morandi X, Jannin P (2009) A surface registration method for quantification of intraoperative brain deformations in image-guided neurosurgery. IEEE Trans Info Tech Biomed 13(6):976–983

    Article  Google Scholar 

  4. Ji S, Hartov A, Roberts DW, Paulsen KD (2009) Data assimilation using a gradient descent method for estimation of intraoperative brain deformation. Med Image Anal 13(5):744–756

    Article  Google Scholar 

  5. Ji S, Fan X, Roberts DW, Paulsen KD (2011) Cortical surface strain estimation using stereovision. In: Fichtinger G, Martel A, Peters T (eds) MICCAI 2011, Part I, LNCS 6891, pp 412–419

    Google Scholar 

  6. Horn BKP, Schunck BG (1981) Determining optical flow. Artif Intell 17(1–3):185–203

    Article  Google Scholar 

  7. Lucas BD, Kanade T (1981) An Iterative Image Registration Technique with an Application to Stereo Vision (DARPA), Proceedings of the 1981 DARPA Image Understanding Workshop, April 1981, pp. 121–130

    Google Scholar 

  8. Brox T, Bruhn A, Papenberg N, Weickert J (2004) High accuracy optical flow estimation based on a theory for warping. In: Pajdla, T., Matas, J(G.) (eds.) ECCV 2004. LNCS, vol. 3024, pp. 25–36

    Google Scholar 

  9. Black MJ, Anandan P (1996) The robust estimation of multiple motions: parametric and piecewise-smooth flow fields. Comput Vis Image Underst 63(1):75–104

    Article  Google Scholar 

  10. Meer P (2004) Robust techniques for computer vision. Emerging Topics in Computer Vision, Gerard Medioni and Sing Bing Kang (Eds.), Prentice Hall, 107–190

    Google Scholar 

  11. Liu C (2009) Beyond pixels: exploring new representations and applications for motion analysis. Doctoral thesis, Massachusetts Institute of Technology, May 2009

    Google Scholar 

  12. Brigham EO (2002) The fast Fourier Transform. Prentice-Hall, New York

    Google Scholar 

  13. Fredric H (1978) On the use of windows for harmonic analysis with the Discrete Fourier Transform. Proc IEEE 66(1):51–83

    Article  Google Scholar 

  14. Pan B, Qian K, Xie H, Asundi A (2009) Two-dimensional digital image correlation for in-plane displacement and strain measurement: a review. Meas Sci Technol 20:062001

    Article  Google Scholar 

  15. Lai WM, Rubin D, Krempl E (1993) Introduction to continuum mechanics. Pergamon, Oxford

    Google Scholar 

Download references

Acknowledgement

This work was supported in part by National Institutes of Health grant number R01 CA159324–01 awarded by the National Cancer Institute.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Songbai Ji .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 The Society for Experimental Mechanics, Inc.

About this paper

Cite this paper

Ji, S., Fan, X., Roberts, D.W., Hartov, A., Paulsen, K.D. (2013). Tracking Cortical Surface Deformation Using Stereovision. In: Prorok, B., et al. Mechanics of Biological Systems and Materials, Volume 5. Conference Proceedings of the Society for Experimental Mechanics Series. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-4427-5_24

Download citation

  • DOI: https://doi.org/10.1007/978-1-4614-4427-5_24

  • Published:

  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-1-4614-4426-8

  • Online ISBN: 978-1-4614-4427-5

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics