Skip to main content

High-Throughput Approaches for the Genetic Diagnosis of Retinal Dystrophies

  • Conference paper
  • First Online:
Retinal Degenerative Diseases

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 723))

Abstract

The genetic diagnosis of inherited retinal dystrophies has been deeply hampered by the extreme genetic and allelic heterogeneity of this group of disorders, with most families bearing rare or private pathogenic variants. Clinicians, patients, and the affected families are becoming aware of the benefits of a reliable molecular diagnosis: it facilitates genetic counseling and prenatal screening, improves the clinical diagnosis – providing prognostic information as genotype–phenotype correlations are being drawn, opens new venues for basic research, and guides therapy as the current clinical trials for retinal disorders are mainly gene-specific. The wide range of high-throughput techniques, now increasingly available and affordable for most laboratories, poses new questions to the clinical geneticists concerning the best approach to accurate genotyping on the basis of efficiency and cost-effectiveness. The comparison between available molecular diagnosis methodologies, in this rapidly moving field, leads to the conclusion that there is not an obvious preferential approach, but a combination of prioritized strategies is at present the optimal choice.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 189.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 249.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Bandah-Rozenfeld D, Mizrahi-Meissonnier L, Farhy C et al (2010) Homozygosity mapping reveals null mutations in FAM161A as a cause of autosomal-recessive retinitis pigmentosa. Am J Hum Genet 87:382–391

    Article  PubMed  CAS  Google Scholar 

  • Biesecker LG (2010) Exome sequencing makes medical genomics a reality. Nat Genet 42:13–14

    Article  PubMed  CAS  Google Scholar 

  • Booij JC, Bakker A, Kulumbetova J et al (2011) Simultaneous mutation detection in 90 retinal disease genes inmultiple patients using a custom-designed 300-kb resequencing chip. Ophthalmology 118:160–167

    Article  PubMed  Google Scholar 

  • Bowne SJ, Sullivan LS, Koboldt DC et al (2011) Identification of disease-causing mutations in autosomal dominant retinitis pigmentosa (adRP) using next-generation DNA sequencing. Invest Ophthalmol Vis Sci 52:494–503

    Article  PubMed  CAS  Google Scholar 

  • Choi M, Scholl UI, Weizhen J et al (2009) Genetic diagnosis by whole exome capture and massively parallel DNA sequencing. Proc Natl Acad Sci USA 106:19096–19101

    Article  PubMed  CAS  Google Scholar 

  • Clark GM, Crowe P, Muszynska D et al (2010) Development of a diagnostic genetic test for simplex and autosomal recessive retinitis pigmentosa. Ophthalmology 117:2169–77.e3

    Article  PubMed  Google Scholar 

  • Henderson RH, Waseem N, Searle R et al (2007) An assessment of the apex microarray technology in genotyping patients with Leber congenital amaurosis and early-onset severe retinal dystrophy. Invest Ophthalmol Vis Sci 48:5684–5689

    Article  PubMed  Google Scholar 

  • Klevering BJ, Yzer S, Rohrschneider K et al (2004) Microarray-based mutation analysis of the ABCA4 (ABCR) gene in autosomal recessive cone-rod dystrophy and retinitis pigmentosa. Eur J Hum Genet 12:1024–1032

    Article  PubMed  CAS  Google Scholar 

  • Koenekoop RK, Lopez I, den Hollander AI et al (2007) Genetic testing for retinal dystrophies and dysfunctions: benefits, dilemmas and solutions. Clin Experiment Ophthalmol 35:473–485

    Article  PubMed  Google Scholar 

  • Littink KW, Koenekoop RK, van den Born LI et al (2010) Homozygosity mapping in patients with cone-rod dystrophy: novel mutations and clinical characterizations. Invest Ophthalmol Vis Sci 51(11):5943–5951

    Article  PubMed  Google Scholar 

  • Mandal MN, Heckenlively JR, Burch T et al (2005) Sequencing arrays for screening multiple genes associated with early-onset human retinal degenerations on a high-throughput platform. Invest Ophthalmo Vis Sci 46:3355–3362

    Article  Google Scholar 

  • Ng SB, Turner EH, Robertson PD et al (2009) Targeted capture and massive parallel sequencing of 12 human exomes. Nature 461:272–278

    Article  PubMed  CAS  Google Scholar 

  • Pomares E, Marfany G, Brion MJ et al (2007) Novel high-throughput SNP genotyping cosegregation analysis for genetic diagnosis of autosomal recessive retinitis pigmentosa and Leber congenital amaurosis. Hum Mutat 28:511–516

    Article  PubMed  CAS  Google Scholar 

  • Pomares E, Riera M, Permanyer J et al (2010) Comprehensive SNP-chip for Retinitis Pigmentosa-Leber Congenital Amaurosis diagnosis: new mutations and detection of mutational founder effects. Eur J Hum Genet 18:118–124

    Article  PubMed  CAS  Google Scholar 

  • Stone EM (2009) Progress towards effective treatments for human photoreceptor degenerations. Curr Opin Genet Dev 19:283–289

    Article  PubMed  CAS  Google Scholar 

  • Thiadens AA, den Hollander AI, Roosing S et al (2009) Homozygosity mapping reveals PDE6C mutations in patients with early-onset cone photoreceptor disorders. Am J Hum Genet 85:240–247

    Article  PubMed  CAS  Google Scholar 

  • Zernant J, Kulm M, Dharmaraj S et al (2005) Genotyping microarray (disease chip) for Leber Congenital Amaurosis: detection of modifier alleles. Invest Ophthalmol Vis Sci 46:3052–3059

    Article  PubMed  Google Scholar 

Download references

Acknowledgments

We would like to acknowledge the generous support from the patients, their families, and patient’s associations, particularly to Andrés Mayor (Fundaluce, Hospital Central de Asturias). E. P. is under contract by CIBERER. This study was supported by grants SAF2009-08079 (Ministerio de Ciencia e Innovación, Gobierno de España) and SGR2009-1427 (Generalitat de Catalunya), CIBERER (U718), Fundaluce and ONCE to R.G.-D. We apologize to all the colleagues whose contributions to the genetic testing of retinal dystrophies could not be quoted due to space limitations.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Roser Gonzàlez-Duarte .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media, LLC

About this paper

Cite this paper

Pomares, E., Marfany, G., Gonzàlez-Duarte, R. (2012). High-Throughput Approaches for the Genetic Diagnosis of Retinal Dystrophies. In: LaVail, M., Ash, J., Anderson, R., Hollyfield, J., Grimm, C. (eds) Retinal Degenerative Diseases. Advances in Experimental Medicine and Biology, vol 723. Springer, Boston, MA. https://doi.org/10.1007/978-1-4614-0631-0_43

Download citation

Publish with us

Policies and ethics