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The Chloroplast Genome and Its Expression

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Chloroplasts

Part of the book series: Cellular Organelles ((CORG))

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Abstract

The studies of Schimper, Strasburger, and others in the 1880s demonstrated that chloroplasts in a sense have an existence of their own. Chloroplasts were found to proliferate by division of existing plastids and were passed on to daughter cells at the time of cell division. But more recent findings have indicated that the chloroplasts’ independence is quite limited. Plastids have their own DNA, which is quite distinct from nuclear DNA, and also have the ability to express the genetic information in their DNA. A question with much current interest, however, is the critical one of how much information chloroplast DNA actually contains. Although the total mass of DNA in a chloroplast is generally somewhat more than that in a bacterial cell, the genetic capacity of chloroplast DNA is much less than that of the bacterial chromosome. The reason for this paradox is that chloroplasts contain multiple copies of a relatively small molecule of DNA. As with mitochondria, the information in chloroplast DNA apparently is only that which is required, separate from the nucleus, to synthesize a few necessary functional proteins. However, even to accomplish the synthesis of these relatively few proteins, the chloroplast must contain its own ribosomes and complete machinery for protein synthesis. As work on the biosynthetic capabilities of the chloroplast proceeds, it is becoming quite clear that most of the plastid’s proteins and properties are determined by the nuclear genome and that most of its proteins are synthesized on cytoplasmic ribosomes.

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Literature Cited

  • Allet, B., and Rochaix, J.-D. (1979) Structure analysis at the ends of the intervening DNA sequences in the chloroplast 23S ribosomal genes of C. reinhardii, Cell 18:55–60.

    Article  PubMed  CAS  Google Scholar 

  • Bedbrook, J. R., Coen, D. M., Beaton, A. R., Bogorad, L., and Rich, A. (1979) Location of the single gene for the large subunit of ribulosebisphosphate carboxylase in the maize chloroplast chromosome, J. Biol. Chem. 254:905–910.

    PubMed  CAS  Google Scholar 

  • Blair, G. E., and Ellis, R. J. (1973) Protein synthesis in chloroplasts, I. Light-driven synthesis of the large subunit of fraction I protein by isolated pea chloroplasts. Biochim. Biophys. Acta 319:223–234.

    PubMed  CAS  Google Scholar 

  • Boffey, S. A., and Leech, R. M. (1982) Chloroplast DNA levels and the control of chloroplast division in light-grown wheat leaves, Plant Physiol. 69:1387–1391.

    Article  PubMed  CAS  Google Scholar 

  • Bogorad, L. (1981) Chloroplasts, J. Cell Biol. 91:256s–270s.

    Article  PubMed  CAS  Google Scholar 

  • Bolen, P. L., Grant, D. M., Swinton, D., Boynton, J. E., and Gillham, N. W. (1982) Extensive methylation of chloroplast DNA by a nuclear gene mutation does not affect chloroplast gene transmission in Chlamydomonas, Cell 28:335–343.

    Article  PubMed  CAS  Google Scholar 

  • Bottomley, W., and Whitfeld, P. R. (1979) Cell-free transcription and translation of total spinach chloroplast DNA, Eur. J. Biochem. 93:31–39.

    Article  PubMed  CAS  Google Scholar 

  • BrĂĽgger, M., and Boschetti, A. (1975) Two-dimensional gel electrophoresis of ribosomal proteins from streptomycin-sensitive and streptomycin-resistant mutants of Chlamydomonas reinhardi, Eur. J. Biochem. 58:603–610.

    Article  PubMed  Google Scholar 

  • Burton, W. G., Grabowy, C. T., and Sager, R. (1979) Role of methylation in the modification and restriction of chloroplast DNA in Chlamydomonas, Proc. Natl. Acad. Sci. USA 76:1390–1394.

    Article  PubMed  CAS  Google Scholar 

  • Calagan, J. L., Pirtle, R. M., Pirtle, I. L., Kashdan, M. A., Vreman, H. J., and Dudock, B. S. (1980) Homology between chloroplast and prokaryotic initiator tRNA. Nucleotide sequence of spinach chloroplast methionine initiator tRNA, J. Biol. Chem. 255:9981–9984.

    PubMed  CAS  Google Scholar 

  • Chiang, K.-S. (1971) Replication, transmission and recombination of cytoplasmic DNAs in Chlamydomonas reinhardi, in Autonomy and Biogenesis of Mitochondria and Chloroplasts (N. K. Boardman, A. W. Linnane, and R. M. Smillie, eds.), Elsevier/North Holland, Amsterdam, pp. 235–249.

    Google Scholar 

  • Chiang, K.-S., and Sueoka, N. (1967) Replication of chloroplast DNA in Chlamydomonas reinhardi during vegetative cell cycle: its mode and regulation, Proc. Natl. Acad. Sci. USA 57:1506–1513.

    Article  PubMed  CAS  Google Scholar 

  • Chua, N.-H., and Gillham, N. W. (1977) The sites of synthesis of the principal thylakoid membrane polypeptides in Chlamydomonas reinhardtii, J. Cell Biol. 74:441–452.

    Article  PubMed  CAS  Google Scholar 

  • Crouse, E. J., Schmitt, J. M., Bohnert, H.-J., Gordon, K., Driesel, A. J., and Herrmann, R. G. (1978) Intramolecular compositional heterogeneity of Spinacia and Euglena chloroplast DNAs, in Chloroplast Development (G. Akoyunoglou and J. H. Argyroudi-Akoyunoglou, eds.), Elsevier/North Holland, Amsterdam, pp. 565–572.

    Google Scholar 

  • Deno, H., Kato, A., Shinozaki, K., and Sugiura, M. (1982) Nucleotide sequences of tobacco chloroplast genes for elongator tRNAMet and tRNAVal (UAC): The tRNAVal(UAC] gene contains a long intron, Nucleic Acids Res. 10:7511–7520.

    Article  PubMed  CAS  Google Scholar 

  • Dietrich, A., Souciet, G., Colas, B., and Weil, J.-H. (1983) Phaseolus vulgaris cytoplasmic leucyl-tRNA synthetase. Purification and comparison of its catalytic, structural, and immunological properties with those of the chloroplastic enzyme. J. Biol. Chem. 258:12386–12393.

    PubMed  CAS  Google Scholar 

  • Dron, M., Rahire, M., and Rochaix, J.-D. (1982a) Sequence of the chloroplast 16S rRNA gene and its surrounding regions of Chlamydomonas reinhardii, Nucleic Acids Res. 10:7609–7620.

    Article  PubMed  CAS  Google Scholar 

  • Dron, M., Rahire, M., and Rochaix, J.-O. (1982b) Sequence of the chloroplast DNA region of Chlamydomonas reinhardii containing the gene of the large subunit of ribulose bisphosphate carboxylase and parts of its flanking genes, J. Mol. Biol. 162:775–793.

    Article  PubMed  CAS  Google Scholar 

  • Dron, M., Rahire, M., Rochaix, J.-O., and Mets, L. (1983) First DNA sequence of a chloroplast mutation: A missense alteration in the ribulosebisphosphate carboxylase large subunit gene. Plasmid 9:321–324.

    Article  PubMed  CAS  Google Scholar 

  • Goodenough, U. W., and Weiss, R. L. (1975) Gametic differentiation in Chlamydomonas reinhardtii, III. Cell wall lysis and microfilament-associated mating structure activation in wild-type and mutant strains, J. Cell Biol. 67:623–637.

    Article  PubMed  CAS  Google Scholar 

  • Grant, D. M., Gillham, N. W., and Boynton, J. E. (1980) Inheritance of chloroplast DNA in Chlamydomonas reinhardtii, Proc. Natl. Acad. Sci. USA 77:6067–6071.

    Article  PubMed  CAS  Google Scholar 

  • Hartley, M. R., and Ellis, R. J. (1973) Ribonucleic acid synthesis in chloroplasts. Biochem. J. 134:249–262.

    PubMed  CAS  Google Scholar 

  • Hartley, M. R., and Head, C. (1979) The synthesis of chloroplast high-molecular-weight ribosomal ribonucleic acid in spinach, Eur. J. Biochem. 96:301–309.

    Article  PubMed  CAS  Google Scholar 

  • Hoober, J. K., and Blobel, G. (1969) Characterization of the chloroplastic and cytoplasmic ribosomes of Chlamydomonas reinhardi, J. Mol. Biol. 41:121–138.

    Article  PubMed  CAS  Google Scholar 

  • Howe, C. J., Bowman, C. M., Dyer, T. A., and Gray, J. C. (1982) Localization of wheat chloroplast genes for the beta and epsilon subunits of ATP synthesis, Mol. Gen. Genet. 186:525–530.

    Article  CAS  Google Scholar 

  • Howe, C. J., Bowman, C. M., Dyer, T. A., and Gray, J. C. (1983) The genes for the alpha and proton-translocating subunits of wheat chloroplast ATP synthase are close together on the same strand of chloroplast DNA, Mol. Gen. Genet. 190:51–55.

    Article  CAS  Google Scholar 

  • Howell, S. H., and Walker, L. L. (1976) Informational complexity of the nuclear and chloroplast genomes of Chlamydomonas reinhardi, Biochim. Biophys. Acta 418:249–256.

    PubMed  CAS  Google Scholar 

  • Kashdan, M. A., and Dudock, B. S. (1982) The gene for a spinach chloroplast isoleucine tRNA has a methionine anticodon, J. Biol. Chem. 257:11191–11194.

    PubMed  CAS  Google Scholar 

  • Koch, W., Edwards, K., and Kössel, H. (1981) Sequencing of the 16S–23S spacer in a ribosomal RNA operon of Zea mays chloroplast DNA reveals two split tRNA genes, Cell 25:203–213.

    Article  PubMed  CAS  Google Scholar 

  • Kolodner, R, and Tewari, K. K. (1972) Molecular size and conformation of chloroplast deoxyribonucleic acid from pea leaves, J. Biol. Chem. 247:6355–6364.

    PubMed  CAS  Google Scholar 

  • Kolodner, R, and Tewari, K. K. (1975) The molecular size and conformation of the chloroplast DNA from higher plants, Biochim. Biophys. Acta 402:372–390.

    PubMed  CAS  Google Scholar 

  • Link, G., Coen, D. M., and Bogorad, L. (1978) Differential expression of the gene for the large subunit of ribulose bisphosphate carboxylase in maize leaf cell types, Cell 15:725–731.

    Article  PubMed  CAS  Google Scholar 

  • Martin, N. C., and Goodenough, U. W. (1975) Gametic differentiation in Chlamydomonas reinhardtii, I. Production of gametes and their fine structure. J. Cell Biol. 67:587–605.

    Article  PubMed  CAS  Google Scholar 

  • Passavant, C. W., Stiegler, G. L., and Hallick, R. B. (1983) Location of the single gene for elongation factor Tu on the Euglena gracilis chloroplast chromosome, J. Biol. Chem. 258:693–695.

    PubMed  CAS  Google Scholar 

  • Pirtle, R., Calagan, J., Pirtle, I., Kashdan, M., Vreman, H., and Dudock, B. S. (1981) The nucleotide sequence of spinach chloroplast methionine elongator tRNA, Nucleic Acids Res. 9:183–188.

    Article  PubMed  CAS  Google Scholar 

  • Rochaix, J.-D. (1978) Restriction endonuclease map of the chloroplast DNA of Chlamydomonas reinhardii, J. Mol. Biol. 126:597–617.

    Article  PubMed  CAS  Google Scholar 

  • Rochaix, J.-D., and Darlix, J.-L. (1982) Composite structure of the chloroplast 23S ribosomal RNA genes of Chlamydomonas reinhardii. Evolutionary and functional implications, J. Mol. Biol. 159:383–395.

    Article  PubMed  CAS  Google Scholar 

  • Rochaix, J.-D., and Malnoe, P. (1978) Anatomy of the chloroplast ribosomal DNA of Chlamydomonas reinhardii, Cell 15:661–670.

    Article  PubMed  CAS  Google Scholar 

  • Sager, R (1972) Cytoplasmic Genes and Organelles, Academic Press, New York.

    Google Scholar 

  • Sager, R (1977) Genetic analysis of chloroplast DNA, Adv. Genet. 19:287–338.

    Article  PubMed  CAS  Google Scholar 

  • Sager, R., and Grabowy, C. (1983) Differential methylation of chloroplast DNA regulates maternal inheritance in a methylated mutant of Chlamydomonas, Proc. Natl. Acad. Sci. USA 80:3025–3029.

    Article  PubMed  CAS  Google Scholar 

  • Sagher, D., Grosfeld, H., and Edelman. M. (1976) Large subunit ribulosephosphate carboxylase messenger RNA from Euglena chloroplasts. Proc. Natl. Acad. Sci. USA 73:722–726.

    Article  PubMed  CAS  Google Scholar 

  • Sano, H., Grabowy, C., and Sager, R. (1981) Differential activity of DNA methyltransferase in the life cycle of Chlamydomonas reinhardi, Proc. Natl. Acad. Sci. USA 78:3118–3122.

    Article  PubMed  CAS  Google Scholar 

  • Schmidt, R. J., Richardson, C. B., Gillham, N. W., and Boynton, J. E. (1983) Sites of synthesis of chloroplast ribosomal proteins in Chlamydomonas, J. Cell Biol. 96:1451–1463.

    Article  PubMed  CAS  Google Scholar 

  • Swinton, D. C., and Hanawalt, P. C. (1972) In vivo specific labeling of Chlamydomonas chloroplast DNA, J. Cell Biol. 54:592–597.

    Article  PubMed  CAS  Google Scholar 

  • Tewari, K. K., Kolodner, R. D., and Dobkin, W. (1976) Replication of circular chloroplast DNA, in Genetics and Biogenesis of Chloroplasts and Mitochondria (T. BĂĽcher, W. Neupert, W. Sebald, and S. Werner, eds.), Elsevier/North-Holland, Amsterdam, pp. 379–386.

    Google Scholar 

  • Thomas, J. R., and Tewari, K. K. (1974) Ribosomal RNA genes in the chloroplast DNA of pea leaves, Biochim. Biophys. Acta 361:73–83.

    PubMed  CAS  Google Scholar 

  • Tiboni, O., and Ciferri, O. (1982) A rapid procedure for the purification of elongation factor Tu (EF-Tu/chl) from spinach chloroplasts., FEBS Lett. 146:197–200.

    Article  CAS  Google Scholar 

Additional Reading

  • Bogorad, L., Gubbins, E. J., Krebbers, E., Larrinua, I. M., Mulligan, B. J., Muskavitch, K. M. T., Orr, E. A., Rodermel, S. R., Schantz, R., Steinmetz, A. A., Vos, G. D., and Ye, K. K. (1983) Cloning and physical mapping of maize plastid genes, Meth. Enzymol. 97:524–554.

    Article  CAS  Google Scholar 

  • Buetow, D. (1982) Molecular biology of chloroplasts, in Photosynthesis: Development, Carbon Metabolism, and Plant Productivity, Vol. 2 (Govindjee, ed.), Academic Press, New York, pp. 43–88.

    Google Scholar 

  • Capel, M. S., and Bourque, D. P. (1982) Characterization of Nicotiana tabacum chloroplast and cytoplasmic ribosomal proteins, J. Biol. Chem. 257:7746–7755.

    PubMed  CAS  Google Scholar 

  • Edelman, M., Hallick, R. B., and Chua, N.-H. (eds.) Methods in Chloroplast Molecular Biology, Elsevier, Amsterdam.

    Google Scholar 

  • Ellis, R. J. (1977) Protein synthesis by isolated chloroplasts, Biochim. Biophys. Acta 463:185–215.

    CAS  Google Scholar 

  • Ellis, R. J. (1981) Chloroplast proteins: Synthesis, transport and assembly, Annu. Rev. Plant Physiol. 32:111–137.

    Article  CAS  Google Scholar 

  • Gillham, N. W. (1978) Organelle Heredity, Raven Press, New York.

    Google Scholar 

  • Hoober, J. K. (1976) Protein synthesis in chloroplasts, in Protein Synthesis (E. H. McConkey, ed.), Marcel Dekker, New York, pp. 169–248.

    Google Scholar 

  • Jolly, S. O., McIntosh, L., Link, G., and Bogorad, L. (1981) Differential transcription in vivo and in vitro of two adjacent maize chloroplast genes: The large subunit of ribulosebisphosphate carboxylase and the 2.2-kilobase gene, Proc. Natl. Acad. Sci. USA 78:6821–6825.

    Article  PubMed  CAS  Google Scholar 

  • Keller, S. J., and Ho, C. (1981) Chloroplast DNA replication in Chlamydomonas reinhardtii, Internatl. Rev. Cytol. 69:157–190.

    Article  CAS  Google Scholar 

  • Lake, J. A. (1981) The ribosome, Sci. Am. 245:(2)84–97.

    Article  PubMed  CAS  Google Scholar 

  • Palmer, J. D., Singh, G. P., and Pillay, D. T. N. (1983) Structure and sequence evolution of three legume chloroplast DNAs, Mol. Gen. Genet. 190:13–19.

    Article  CAS  Google Scholar 

  • Potter, J. W., and Black, C. C., Jr. (1982) Differential protein composition and gene expression of leaf mesophyll cells and bundle sheath cells of the C4 plant Digitaria sanguinalis (L.) Scop., Plant Physiol. 70:590–597.

    Article  PubMed  CAS  Google Scholar 

  • Rochaix, J.-D. (1981) Organization, function and expression of the chloroplast DNA of Chlamydomonas reinhardii, Experientia 37:323–332.

    Article  CAS  Google Scholar 

  • Schwarz, Zs. and Kassel, H. (1980) The primary structure of 16S rDNA from Zea mays chloroplast is homologous to E. coli 16S rRNA, Nature (London) 283:739–742.

    Article  CAS  Google Scholar 

  • Whitfeld, P. R., and Bottomley, W. (1983) Organization and structure of chloroplast genes, Annu. Rev. Plant Physiol. 34:279–309.

    Article  CAS  Google Scholar 

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© 1984 Plenum Press, New York

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Hoober, J.K. (1984). The Chloroplast Genome and Its Expression. In: Chloroplasts. Cellular Organelles. Springer, Boston, MA. https://doi.org/10.1007/978-1-4613-2767-7_7

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  • DOI: https://doi.org/10.1007/978-1-4613-2767-7_7

  • Publisher Name: Springer, Boston, MA

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