Skip to main content

Studies on the Transposition of IS1

  • Chapter
Plasmids in Bacteria

Abstract

The insertion sequence, IS1, is among the smallest insertion elements known. It is a member of a class of elements which includes IS10, IS50, and IS903 which are frequently found in pairs flanking a nontransposable DNA segment. In concert, the 2 flanking elements are able to promote transposition of the entire structure. This type of transposable element has been called a compound or composite transposon. The best characterized IS1-flanked compound transposon is perhaps Tn9 in which 2 directly repeated copies of IS1 flank a 1.1-kb segment of DNA which encodes chloramphenicol acetyltransferase (CAT) (1). Unlike most other elements of this class, however, IS1 is present in the chromosomes of a variety of enterobacteria, in some cases in many copies (2).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. MacHattie, L.A., and J.B. Jakowski (1977) Physical Structure and deletion properties of the chloramphenicol resistance transposon Tn9 in phage lambda. InDNA Insertion Elements, Plasmids and Episomes, A.I. Bukhari, J.A. Shapiro, and S.L. Adhya, eds. Cold Spring Harbor Laboratory, New York, pp. 219–228.

    Google Scholar 

  2. Nyman, K., K. Nakamura, H. Ohtsubo, and E. Ohtsubo (1981) Distribution of the insertion sequence IS1 in gram-negative bacteria.Nature 289:609–612.

    Article  PubMed  CAS  Google Scholar 

  3. Ptashne, K., and S.N. Cohen (1975) Occurrence of insertion sequence (IS) regions on plasmid deoxyribonucleic acid as direct and inverted nucleotide duplications.J. Bact. 122:776.

    PubMed  CAS  Google Scholar 

  4. Kopecko, D.J., J. Brevet, and S.N. Cohen (1976) Involvement of multiple translocating DNA segments and recombinational hot-spots in the structural evolution of bacterial plasmids.J. Mol. Biol. 108:333–360.

    Article  PubMed  CAS  Google Scholar 

  5. Sharp, P.A., S.N. Cohen, and N. Davidson (1973) Electron microscope heteroduplex studies of sequence relations among plasmids ofE. coli: Structure of drug resistance (R) factors and F factors.J. Mol. Biol. 75:235–255.

    Article  PubMed  CAS  Google Scholar 

  6. Rownd, R.H., and S. Mickel (1971) Dissociation and reassociation of RTF and r-determinants of the R factor NR1 inProteus mirabilis.Nature 234:40–43.

    Article  CAS  Google Scholar 

  7. Chandler, M., E. Boy de la Tour, D. Willems, and L. Caro (1979) Some properties of the chloramphenicol resistance transposon Tn9.Mol. Gen. Genet. 176:221–231.

    PubMed  CAS  Google Scholar 

  8. Iida, S., C. Hanni, C. Echarti, and W. Arber (1981) Is the IS1- flanked r-determinant of the plasmid NR1 a transposon?J. Gen. Microb. 126:413–425.

    CAS  Google Scholar 

  9. Chandler, M., J. Sechaud, and L. Caro (1982) A mutant of the plasmid R100.1 capable of producing autonomous circular forms of its resistance determinant.Plasmid 7:251–262.

    Article  PubMed  CAS  Google Scholar 

  10. Grindley, N.D.F. (1978) IS1 Insertion generates a duplication of a nine base pair sequence at its target site.Cell 13:419–426.

    Article  PubMed  CAS  Google Scholar 

  11. Calos, M.P., L. Johnsrud and J.H. Miller (1978) DNA Sequence at the Integration Site of the Insertion Element IS1.Cell 13:411–418.

    Article  PubMed  CAS  Google Scholar 

  12. Iida, S., R. Marcoli, and T.A. Bickle (1981) Variant insertion element IS1 generates 8-base pair duplications of the target sequence.Nature 294:374–376.

    Article  PubMed  CAS  Google Scholar 

  13. Ohtsubo, E., M. Zenilman, and H. Ohtsubo (1980) Plasmids containing insertion sequences are potential transposons.Proc. Natl. Acad. Sci., USA 77:750–754.

    Article  PubMed  CAS  Google Scholar 

  14. Reif, H.J., and H. Saedler (1975) IS1 is involved in deletion formation in the gal region ofE. coli K12.Mol. Gen. Genet. 137:17–28.

    PubMed  CAS  Google Scholar 

  15. Cornelis, G., and H. Saedler (1980) Deletions and inversion induced by a resident IS1 of the lactose transposon Tn951.Mol. Gen. Genet. 178:376–374.

    Article  Google Scholar 

  16. Kleckner, N. (1981) Transposable elements in procaryotes.Ann. Rev. Genet. 15:341–404.

    Article  PubMed  CAS  Google Scholar 

  17. Galas, D.J., and M. Chandler (1982) Structure and stability of Tn9-mediated cointegrates: Evidence for two pathways of transposition.J. Mol. Biol. 154:245–272.

    Article  PubMed  CAS  Google Scholar 

  18. Galas, D.J., and M. Chandler (1981) On the molecular mechanism of transposition.Proc. Natl. Acad. Sci., USA 78:4858.

    Article  PubMed  CAS  Google Scholar 

  19. Iida, S., J. Meyer, and W. Arber (1983) Procaryotic IS elements. InMovable Genetic Elements, J. Shapiro, ed. Academic Press, New York, pp. 159–221.

    Google Scholar 

  20. Chandler, M., M. Clerget, and D.J. Galas (1982) The transposition frequency of IS1-flanked transposons is a function of their size.J. Mol. Biol. 154:229–243.

    Article  PubMed  CAS  Google Scholar 

  21. Morisato, D., J.C. Way, H.-J. Kim, and N. Kleckner (1983) Tn10 transposase acts preferentially on nearby transposon endsin vivo.Cell 32:799–807.

    Article  PubMed  CAS  Google Scholar 

  22. Guyer, M.S., R.R. Reed, J.A. Steitz, and K.B. Low (1980) Identification of a Sex Factor Affinity Site in E. coli as γδ.Cold Spring Harbor Symp. Quant. Biol. 45:135–140.

    Google Scholar 

  23. Chandler, M., and D.J. Galas (1983) Cointegrate formation mediated by Tn9 II. Activity of IS1 is modulated by external DNA sequences.J. Mol. Biol. 170:61–91.

    Article  PubMed  CAS  Google Scholar 

  24. Stüber, D., and H. Bujard (1981) Organization of transcriptional signals in plasmids pBR322 and pACYC184.Proc. Natl. Acad. Sci., USA 78:167–171.

    Article  PubMed  Google Scholar 

  25. Machida, C., Y. Machida, H.-C. Wang, K. Ishizaki, and E. Ohtsubo (1983) Repression of cointegration ability of insertion element IS1 by transcriptional readthrough from flanking regions.Cell 34:135–142.

    Article  PubMed  CAS  Google Scholar 

  26. Sasakawa, C., J.B. Loew, L. McDivitt, and D.E. Berg (1982) Control of transposon Tn5 transposition inEscherichia coli.Proc. Natl. Acad. Sci., USA 79:7450–7454.

    Article  PubMed  CAS  Google Scholar 

  27. Chandler, M., E. Roulet, L. Silver, and L. Caro (1979) Tn10-mediated integration of the plasmid R100.1 in the bacterial chromosome: Inverse transposition.Mol. Gen. Genet. 173:23–30.

    Article  PubMed  CAS  Google Scholar 

  28. Reif, H.J. (1980) Genetic evidence for absence of transposition functions from the internal part of Tn981 a relative of Tn9.Mol. Gen. Genet. 177:667–674.

    Article  PubMed  CAS  Google Scholar 

  29. Rosner, J.L., and M.S. Guyer (1980) Transposition of IS1- bio- IS1 from a bacteriophage derivative carrying the IS1-cat-IS1 transposon (Tn9).Mol. Gen. Genet. 178:111–120.

    Article  PubMed  CAS  Google Scholar 

  30. Ohtsubo, E., and H. Ohtsubo (1978) Nucleotide sequence of an insertion sequence, IS1.Proc. Natl. Acad. Sci., USA 75:615–619.

    Article  PubMed  CAS  Google Scholar 

  31. Johnsrud, L. (1978) DNA sequence of IS1, a transposable element.Mol. Gen. Genet. 169:213–218.

    Article  Google Scholar 

  32. Jaskunas, S.R., and M. Nomura (1977) Mapping of the ribosomal protein genes inE.coli by means of insertion mutations. InDNA Insertion Elements, Plasmids and Episomes, A.I. Bukhari, J.A. Shapiro, and S.L. Adhya, eds., Cold Spring Harbor Laboratory, New York, pp. 487–495.

    Google Scholar 

  33. Brewster, J.M., and E.M. Morgan (1981) Tn9 and IS1 inserts in a ribosomal ribonucleic acid operon ofE. coli are incompletely polar.J. Bact. 148:897–903.

    PubMed  CAS  Google Scholar 

  34. Grindley, N.F.D. (1983) Transposition of Tn3 and related transposons.Cell 32:3–5.

    Article  PubMed  CAS  Google Scholar 

  35. Wienert, T.A., N.A. Schaus, and N.D.F. Grindley (1983) Insertion sequence duplication in transpositional recombination.Science 222:755–765.

    Article  Google Scholar 

  36. Hirschel, B.J., D.J. Galas, and M. Chandler (182) Cointegrate formation by Tn5, but not transposition, is dependent on recA. Proc. Natl. Acad. Sci., USA 79:4530-4532.

    Google Scholar 

  37. Berg, D.E. (1983) Structural requirements for IS30-mediated gene transposition.Proc. Natl. Acad. Sci., USA 80:792–796.

    Article  PubMed  CAS  Google Scholar 

  38. Galas, D.J., M.P. Calos, and J.H. Miller (1980) Sequence Analysis of Tn9 insertions in the lacZ gene.J. Mol. Biol. 144:19–41.

    Article  PubMed  CAS  Google Scholar 

  39. Meyer, J., S. Iida, and W. Arber (1980) Does the insertion element IS1 transpose preferentially into A+T rich DNA segments?Mol. Gen. Genet. 178:471–473.

    Article  PubMed  CAS  Google Scholar 

  40. Sutcliffe, J.G. (1978) Complete nucleotide sequence of theEscherichia coli plasmid pBR322.Cold Spring Harbor Symp. Quant. Biol. 43:77–90.

    Google Scholar 

  41. Peden, K.W.C. (1983) Revised sequence of the tetracycline resistance gene of pBR322.Gene 22:275–280.

    Article  Google Scholar 

  42. Kline, R.D., E. Seising, and R.D. Wells (1980) A rapid micro-scale technique for isolation of recombinant plasmid DNA suitable for framing.Plasmid 3:88–91.

    Article  Google Scholar 

  43. Proctor, G.N., and R.H. Rownd (1982) Rosanilins: indicator dyes for cloramphenicol resistant enterobacteria containing chloramphenicol acetyltransferase.J. Bacter. 150:1375–1382.

    CAS  Google Scholar 

  44. Hyashi, K. (1980) A cloning vehicle suitable for strand separation.Gene 11:109–155.

    Article  Google Scholar 

  45. Devos, R., R. Contreras, J. van Emmelo, and W. Fiers (1979) Identification of the translocatable element IS1in a molecular chimera constructed with plasmid pBR322 DNA in which a bacteriophage MS2 DNA copy was inserted by the poly (dA) •Poly(dT) linker method.J. Mol. Biol. 128:621–632.

    Article  PubMed  CAS  Google Scholar 

  46. Arber, W., S. Iida, H. Jutte, P. Caspers, J. Meyer, and C. Hanni (1979) Rearrangements of genetic material in escherichia coli as observed in the bacteriophage P1 plasmid.Cold Spring Harbor Symp. Quant. Biol. 43:1197–1208

    PubMed  CAS  Google Scholar 

  47. Prentki, P., and H.M. Kirsch (1982) A modified pBR322 vector with improved properties for the cloning, recovery, and sequencing of blunt-ended DNA fragments.Gene 17:189–196.

    Article  PubMed  CAS  Google Scholar 

  48. Rak, B., M. Lusky, and M. Hable (1982) Expression of two proteins from overlapping and oppositely oriented genes on transposable DNA insertion element IS5.Nature 297:124–128.

    Article  PubMed  CAS  Google Scholar 

  49. Klaer, R., S. Kuhn, H.-J. Fritz, E. Tillmann, I. Saint-Girions, P. Haberman, D. Pfeifer, and P. Starlinger (1980) The sequence of IS4.Cold Spring Harbor Symp. Quant. Biol. 45:215–224.

    Google Scholar 

  50. Ohtsubo, H., K. Nyman, W. Doroskiewicz, and E. Ohtsbuo (1981) Multiple copies of isoinsertion sequence IS1 in gram-negative bacteria.Nature 292:640–643.

    Article  PubMed  CAS  Google Scholar 

  51. Shepherd, J.C.W. (1981) Method to determine the reading frame of a protein from the purine pyrimidine genome sequence and its possible evolutionary justification.Proc. Natl. Acad. Sci., USA 78:1596–1600.

    Article  PubMed  CAS  Google Scholar 

  52. Galas, D.J., and T.F. Smith (1984) The relationship between codon boundaries and multiple reading-frame preferences: Coding organization of bacterial insertion sequences.Mol. Biol. Evol. 1:260–268.

    PubMed  CAS  Google Scholar 

  53. Machida, Y., C. Machida, H. Ohtsubo, and E. Ohtsubo (1982) Factors determining frequency of plasmid cointegration mediated by insertion sequence IS1.Proc. Natl. Acad. Sci., USA 79:277–281.

    Article  PubMed  CAS  Google Scholar 

  54. Remaut, E., P. Stanssens, and W. Fiers (1981) Plasmid vectors for high efficiency expression controlled by the PI promoter of coliphage lambda.Gene 15:81–93.

    Article  PubMed  CAS  Google Scholar 

  55. Anderson, W.F., Y. Takeda, D.H. Olendorf, and B.W. Matthews (1982) Proposed α-helical super-secondary structure associated with protein DNA recognition.J. Mol. Biol. 159:745–751.

    Article  PubMed  CAS  Google Scholar 

  56. Shaw, D.J., D.W. Rice, and J.R. Guest (1983) Homology between CAP and Fnr, a regulator of anaerobic respiration inEscherichia coli.J. Mol. Biol. 116:241–47.

    Article  Google Scholar 

  57. Prentki, P., and H.M. Krisch (1984)In vitro insertional mutagenesis with a selectable DNA fragment.Gene (in press).

    Google Scholar 

  58. Roulet, E., B. Allet, and M. Chandler (1984) Cloning and expression of the Mu a gene.Gene (28:65–72).

    Article  PubMed  CAS  Google Scholar 

  59. Cesareni, G., M.A. Muesing, and B. Polisky (1982) Control of ColE1 DNA replication: The rop gene product negatively affects transcription from the replication primer promoter.Proc. Natl. Acad. Sci., USA 79:6313–6317.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1985 Plenum Press, New York

About this chapter

Cite this chapter

Chandler, M., Galas, D.J. (1985). Studies on the Transposition of IS1. In: Helinski, D.R., Cohen, S.N., Clewell, D.B., Jackson, D.A., Hollaender, A. (eds) Plasmids in Bacteria. Springer, Boston, MA. https://doi.org/10.1007/978-1-4613-2447-8_7

Download citation

  • DOI: https://doi.org/10.1007/978-1-4613-2447-8_7

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4612-9487-0

  • Online ISBN: 978-1-4613-2447-8

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics