Abstract
The synthesis of the peptide bonds takes place via the transfer of the activated peptidyl residue from peptidyl-tRNA to the aminoacyl residue of aa-tRNA. Although the ester bond of charged tRNAs is an energy-rich bond with the free energy of hydrolysis approximately equal to the free energy of hydrolysis of ATP (Loftfield, 1972), the reaction between peptidyl- and aminoacyl-tRNA does not occur spontaneously if the two charged tRNAs are allowed to react in buffered aqueous solutions. Even at high concentration of the charged tRNA species, a new peptide bond will not be formed in the absence of ribosomes. Therefore, the macromolecular components of the ribosomal translational apparatus must be involved either as a matrix surface or as a catalytic unit in the peptidyl transferase reaction.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Baksht, E., de Groot, N. (1974). Enzymic binding of aminoacyl-tRNA to reticulo-cyte ribosomes. Stimulatory effect of donor site bound peptidyl-tRNA. Mol. Biol. Rep 1: 493–498.
Baksht, E., de Groot, N., Sprinzl, M., Cramer, F. (1976). Properties of tRNA species modified in the 3’-terminal ribose moiety in a eukaryotic ribosomal sys-tem. Biochemistry 15: 3639–3645.
Barta, A., Steiner, G., Brosius, J., Noller, H.F., Kuechler, E. (1984). Identification of a site on 23S ribosomal RNA located at the peptidyl transferase center. Proc. Natl. Acad. Sci. USA 81: 3607–3611.
Bhuta, A., Quiggle, K., Ott, T., Ringer, D., Chladek, S. (1981). Stereochemical control of ribosomal peptidyltransferase reaction. Role of amino acid side-chain orientation of acceptor substrate. Biochemistry 20: 8–14.
Cech, T.R., Zang, A.T., Grabowski, P.J. (1981). In vitro splicing of the ribosomal RNA precursor of tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence. Cell 27: 487–496.
Cheney, V.B. (1974). Ab initio calculations on large molecules using molecular fragments, structural correlations between natural substrate moieties and some antibiotic inhibitors of peptidyl transferase. J. Med. Chem 17: 590–595.
Chinali, G., Sprinzl, M., Parmeggiani, A., Cramer, F. (1974). Participation in protein biosynthesis of transfer ribonucleic acids bearing altered 3/-terminal ribosyl residues. Biochemistry 13: 3001–3006.
Chladek, S., Sprinzl, M. (1985). The 3/-end of tRNA and its role in protein biosynthesis. Angewandete Chemie, Int. ed 24: 371–391.
Derwenskus, K.-H., Sprinzl, M. (1983). Interaction of cinnamyl-tRNA with Escherichia coli elongation factor Tu. FEBS Lett. 151: 143–147.
Fischer, W., Doi, T., Ikehara, M., Ohtsuka, E., Sprinzl, M. (1985). Interaction of methionine-specific tRNAs from Escherichia coli with immobilized elongation factor Tu. FEBS Lett. 192: 151–155.
Forchhammer, J., Lindhal, L. (1971). Growth rate of polypeptide chains as a func-tion of the cell growth rate in a mutant of Escherichia coli 15 J. Mol. Biol. 55: 563–568.
Fraser, T.H., Rich, A. (1973). Synthesis and aminoacylation of 3’-amino-3/-deoxy transfer RNA and its activity in ribosomal protein synthesis. Proc. Natl. Acad. Sci. USA 70: 2671–2675.
Garrett, R.A., Woolley, P. (1982). Identifying the peptidyl transferase centre. TIBS 7: 385–386.
Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N., Altman, S. (1983). The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35: 849–857.
Hay, R.W., Porter, F.J. (1967). Protein ionisation constants and kinetics of base hydrolysis of some a-amino acid esters in aqueous solution. J. Chem. Soc. (B): 1261–1264.
Hecht, S.M. (1977). Utilization of isomeric aminoacyl transfer ribonucleic acids in peptide bond formation. Acct. Chem. Res 10: 239–245.
Hecht, S.M., Alford, B., Kuroda, Y, Kitano, S. (1978). “Chemical aminoacyla- tion” of tRNAs. J. Biol. Chem. 253:4517–4520.
Heckler, T.G., Zama, Y., Naka, T, Hecht, S.M. (1983). Dipeptide formation with misacylated tRNAs. J. Biol. Chem 258: 4492–4495.
Hentzen, D., Mandel, P., Garel, J.P. (1972). Relation between aminoacyl-tRNA stability and the fixed amino acid. Biochim. Biophys. Acta 281: 228–232.
Herve, G., Chapeville, F. (1965). Incorporation of phenyllactic acid in terminal position during polyphenyl alanine biosynthesis. J. Mol. Biol 13: 757–766.
Holschuh, K., Bonin, J., Gassen, G. (1980). Mechanism of translocation: effect of cognate transfer ribonucleic acids on the binding of AUGU to 70S ribosomes. Biochemistry 19: 5857–5863.
Jekowsky, E., Miller, D.L., Schimmel, P.R. (1977). Isolation, characterization, and structural implications of a nuclease-digested complex of aminoacyl transfer RNA and Escherichia coli elongation factor Tu. J. Mol. Biol 114: 451–458.
Joshi, R.L., Faulhammer, H., Chapeville, F., Sprinzl, M., Haenni, A.-L. (1984). Aminoacyl RNA domain of turnip yellow mosaic virus Val-RNA interacting with elongation factor Tu. Nucl. Acids Res 12: 7467–7473.
Knowlton, R.G., Yarus, M. (1980). Discrimination between aminoacyl groups on su+7 tRNA by eongation factor Tu. J. Mol. Biol 139: 721–729.
Kruse, T.A., Clark, B.F.C., Appel, B., Erdmann, V.A. (1980a). The structure of the CCA end of tRNA, aminoacyl-tRNA and aminoacyl-tRNA in the ternary complex. FEBS Lett. 117: 315–319.
Kruse, T.A., Siboska, G.E., Sprinzl, M, Clark, B.F.C. (1980b). The effect of chemical modification of the CCA end of yeast tRNAphe on its biological activity on ribosomes. Eur. J. Biochem 107: 1–6.
Labuda, D., Striker, G., Porschke, D. (1984). Mechanism of codon recognition by transfer RNA and codon-induced tRNA association. J. Mol. Biol 174: 587–595.
Leder, P. (1973). Elongation reactions in protein synthesis. Adv. Prot. Chem 27: 213–223.
Loftfield, R.B. (1972). Mechanism of aminoacylation to transfer RNA. Prog. Nucl. Acid Res. Mol. Biol 12: 87–91.
Lucas-Lenard, J., Tao, P., Haenni, A.-L. (1969). Further studies on bacterial polypeptide elongation. Cold Spring Harbor Symp. Quant. Biol 34: 455–462.
Maelicke, A., Sprinzl, M., von der Haar, F., Khwaja, T.A., Cramer, F. (1974). Structural studies on phenylalanine transfer ribonucleic acid from yeast with the spectroscopic label formycin. Eur. J. Biochem 43: 617–623.
McLaughlin, C.S., Ingram, V.M. (1965). Chemical studies on amino acid acceptor ribonucleic acids. IV. Position of the amino acid residue in aminoacyl s-RNA: chemical approach. Biochemistry 4: 1442–1448.
Möller, A., Wild, U., Riesner, D., Gassen, G.H. (1979). Evidence from ultraviolet absorbance measurements for a codon-induced conformational change in lysine tRNA from Escherichia coli. Proc. Natl. Acad. Sci. USA 76: 3266–3270.
Nierhaus, K.H. (1982). Structure, assembly, and function of ribosomes. Curr. Top. Microbiol. Immunol 97: 81–102.
Nierhaus, K.H., Schulz, H., Coopermann, B.S. (1980). Molecular mechanisms of the ribosomal peptidyltransferase center. Biochem. Int 1: 185–190.
Paulsen, H., Wintermeyer, W. (1984). Incorporation of 1,N6-ethenoadenosine into the 3’-terminus of tRNA using T4 RNA ligase. Eur. J. Biochem 138: 117–123.
Pingoud, A., Urbanke, C. (1980). Aminoacyl transfer ribonucleic acid binding site of the bacterial elongation factor Tu. Biochemistry 19: 2108–2114.
Ravel, J.M., Shorey, R.L., Shive, W. (1967). Evidence for a guanine nucleotide-aminoacyl-RNA complex as an intermediate in the enzymic transfer of amino- acyl-RNA to ribosomes. Biochem. Biophys. Res. Commun 29: 68–71.
Rich, A., RajBhandary, U.L. (1976). Transfer RNA: molecular structure, sequence, and properties. Ann. Rev. Biochem 45: 805–860.
Sedlaček, J., Jonák, J., Rychlik, I. (1976). Prevention of acylation of aminoacyl- tRNA bound in a complex with EF-Tu elongation factor. FEBS Lett. 68: 208–212.
Schuber, F., Pinck, M. (1974). On the chemical reactivity of aminoacyl-tRNA ester bond. Influence of pH and nature of the acyl group on the rate of hydrolysis. Biochimie 56: 383–390.
Schulman, L.H., Pelka, H., Sundari, R.M. (1974). Structural requirements for recognition of Escherichia coli initiator and non-initiator transfer ribonucleic acids by bacterial T factor. J. Biol. Chem 249: 7102–7110.
Sprinzl, M., Cramer, F. (1973). Accepting site for aminoacylation of tRNAphe from yeast. Nat. New Biol. (London) 245: 3–5.
Sprinzl, M., Cramer, F. (1975). Site of aminoacylation of tRNAs from Escherichia coli with respect to the 2or 3/-hydroxyl group of the terminal adenosine. Proc. Natl. Acad. Sci. USA 72: 3049–3053.
Sprinzl, M., Cramer, F. (1979). The C-C-A end of tRNA and its role in protein biosynthesis. Prog. Nucl. Acid Res. Mol. Biol 22: 1–21.
Sprinzl, M., Graeser, E. (1980). Role of the 5’-terminal phosphate of tRNA for its function during protein biosynthesis elongation cycle. Nucl. Acids Res 8: 4737–4746.
Sprinzl, M., Kucharzewski, M., Hobbs, J.B., Cramer, F. (1977a). Specificity of elongation factor Tu from Escherichia coli with respect to attachment of the amino acid to the 2’ or 3/-hydroxyl group of the terminal adenosine of tRNA. Eur. J. Biochem 78: 55–61.
Sprinzl, M., Siboska, G.E., Pedersen, J. (1978). Properties of tRNAphe from yeast carrying a spin label on the 3’-terminal. Interaction with yeast phenylalanyl-tRNA synthetase and elongation factor Tu from Escherichia coli. Nucl. Acids Res 5: 861–870.
Sprinzl, M., Sternbach, H., von der Haar, F., Cramer, F. (1977 b). Enzymatic incor-poration of ATP and CMP analogues into 3’ end of tRNA. Eur. J. Biochem 81: 579–585.
Taiji, M., Yokoyama, S., Miyazawa, T. (1983). Transacylation rates of (aminoacyl) adenosine moiety at the 3/-terminus of aminoacyl transfer ribonucleic acid. Biochemistry 22: 3220–3226.
Thang, M.N., Dondon, L., Rether, B. (1972). Effect of the presence of a pCpCpCpA 3/-terminus in Phe-tRNAphe yeast on the interaction with elongation factors and with the poly U-ribosome system. FEBS Lett. 26: 145–149.
Uemura, H., Imai, M., Ohtsuka, E., Ikehara, M., Soil, D. (1982). E. coli initiatior tRNA analogs with different nucleotides in the discriminator base position. Nucl. Acids Res 10: 6531–6539.
Wagner, T., Sprinzl, M. (1980). The complex formation between Escherichia coli aminoacyl-tRNA, elongation factor Tu and GTP. Eur. J. Biochem 108: 213–219.
Wagner, T., Sprinzl, M. (1983). Inhibition of ribosomal translocation by peptidyl transfer ribonucleic acid analogues. Biochemistry 22: 94 - 100.
Yarus, M. (1979). The accuracy of translation. Prog. Nucl. Acid. Res. Mol. Biol 23: 195–210.
Zielinski, W.S., Sprinzl, M. (1984). Chemical synthesis of 5-azacytidine nucleotides and preparation of tRNAs containing 5-azacytidine in its 3/-terminus. Nucl. Acids Res 12: 5025–5032.
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1986 Springer-Verlag New York Inc.
About this chapter
Cite this chapter
Sprinzl, M. (1986). Isomers of Aminoacyl- and Peptidyl-tRNA in the Peptidyl Transferase Reaction. In: Hardesty, B., Kramer, G. (eds) Structure, Function, and Genetics of Ribosomes. Springer Series in Molecular Biology. Springer, New York, NY. https://doi.org/10.1007/978-1-4612-4884-2_29
Download citation
DOI: https://doi.org/10.1007/978-1-4612-4884-2_29
Publisher Name: Springer, New York, NY
Print ISBN: 978-1-4612-9346-0
Online ISBN: 978-1-4612-4884-2
eBook Packages: Springer Book Archive