Abstract
The year this volume is published marks the 30th anniversary of the first paper on DNA-dependent RNA polymerase [1]. Considering the development of the field since then, it comes as a surprise that this first paper describes an enzymatic activity of mammalian rather than bacterial origin. In the decade to follow, however, the RNA polymerase of E. coli became the prime object of investigation, and no significant advances were made with RNA polymerases from eukaryotes. The reasons for this were twofold: first, there is only one molecular species of RNA polymerase ase in bacteria, and this could be isolated together with its major initiation factor [2], allowing in vitro transcription assays to be performed with native DNA of defined origin; second, three different enzymes are present in eukaryotes, all of which are purified in the form of a core enzyme whose activities can be measured only under “unnatural” conditions, usually using denatured DNA as templates [for review see 3]. Eukaryotic in vitro transcription systems allowing correct initiation at bona fide promoters have been developed only in the past several years. and only through recombinant DNA techniques has it become possible to start tackling the formidable task of dissecting the structure of the RNA polymerases and to see at last some crude attempts to attribute certain functions like DNA or nucleotide binding to regions in the primary structure of enzyme subunits. The question of how genes are regulated has, over the past decade, been approached almost to the exclusion of the transcribing enzyme in that over 90% of the literature is concerned with the study of promoter and enhancer elements by in vitro mutagenesis and in vivo assays. During the past few years, in vitro transcription systems, which allow the identification of transcription factors and their effects on initiation and elongation of RNA chains mediated by either of the RNA polymerases, have been developed to the point where we begin to perceive a coherent picture of the common features of gene function.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Weiss, S.B., and Gladstone, L. (1959) J. Am. Chem. Soc. 81, 4118.
Burgess, R.R., Travers, A.A., Dunn, T.T., and Bautz, E.K.F. (1968) Nature 221, 43–45.
Chambon, P. (1974) The Enzymes, Vol. X, 261–331, Boyer, P.D. (ed.). Academic Press, New York.
Roeder, R.G., and Rutter, W.J. (1969) Nature 224, 234–237.
Kedinger, C., Gniazdowski, M., Mandel, T.L., Gissinger, F., and Chambon, P. (1970) Biochem. Biophys. Res. Commun. 38, 165–171.
Sentenac, A. (1985) CRC Crit. Rev. Biochem. 18, 31–90.
Burton, Z.F., Killeen, M., Sopta, M., Ortolan, L.G., and Greenblatt, J. (1988) Mol. Cell. Biol. 8, 1602–1613.
Thuriaux, P., Mann, C., Buhler, J.-M., Treich, I., Gudenus, R., Mariotte, S., Riva, M., and Sentenac, A. (1986) In Extrachromosomal Elements in Lower Eukaryotes, 519–531, Wickner, R.B., et al. (eds.). Plenum Publishing Co., New York.
Cornelissen, A.W.C.A., Evers, R., and Köck, J. (1988) In Oxford Surveys on Eukaryotic Genes, Vol. 5, 91–131.
Faust, D.M. (1986) PhD Thesis, University of Heidelberg.
Bell, G.J., Valenzuela, P., and Rutter, W. (1976) Nature 261, 429–431.
Breant, B., Buhler, J.M., Sentenac, A., and Fromageot, P. (1983) Eur. J. Biochem. 130, 247–251.
Buhler, J.-M., Huet, J., Davis, K.E., Sentenac, A., and Fromageot, P. (1980) J. Biol. Chem. 255, 9949–9954.
Huet, J., Sentenac, A., and Fromageot, P. (1982) J. Biol. Chem. 257, 2613–2618.
Krämer, A., Haars, R., Kabisch, R., Will, H., Bautz, F.A., and Bautz, E.K.F. (1980) Mol. Gen. Genet. 180, 193–199.
Greenleaf, A.L., Borsett, L.M., Jiamachello, P.F., and Coulter, D.E. (1979) Cell 18, 613–622.
Greenleaf, A.L., Weeks, J.R., Voelker, R.A., Ohnishi, S., and Dickson, B. (1980) Cell 21, 785–792.
Searles, L.L., Jokerst, R.S., Bingham, P.M., Voelker, R.A., and Greenleaf, A.L. (1982) Cell 31, 585–592.
Allison, L.A., Moyle, M., Shales, M., and Ingles, C.J. (1986) Cell 42, 599–610.
Ingles, C.J., Biggs, J., Wong, J.K.-C., Weeks, J.R., and Greenleaf, A.L. (1983) Proc. Natl. Acad. Sci. USA 81, 2157–2161.
Ingles, C.J., Himmelfarb, H.J., Shales, M., Greenleaf, A.L., and Friesen, J.D. (1984) Proc. Natl. Acad. Sci. USA 81, 2157–2161.
Ingles, C.J., Moyle, M., Allison, L.A., Wong, J.K.-C., Archambault, J., and Friesen, C.D. (1987) Mol. Cell. Biol. 52, 383–393.
Corden, J.L., Cadena, J.L., Ahearn, J.M., and Dahmus, M.E. (1985) Proc. Natl. Acad. Sci. USA 82, 7934–7938.
Ahearn, J.M., Bartolomei, M.S., West, M.L., Cisek, L.J., and Corden, J.L. (1987) J. Biol. Chem. 262, 10695–10705.
Cho, K.W.Y., Khalili, K., Zandomeni, R., and Weinmann, R. (1985) J. Biol. Chem. 260, 15204–15210.
Riva, M., Mémet, S., Micouin, J.-Y., Huet, J., Treich, I., Dassa, J., Young, R., Buhler, J.-M., Sentenac, A., and Fromageot, P. (1986) Proc. Natl. Acad. Sci. USA 83, 1554–1558.
Young, R.A., and Davis, R.W. (1983) Science 222, 778–782.
Mémet, S.J., Gouy, M., Marck, C., Sentenac, A., and Buhler, J.-M. (1988) J. Biol. Chem. 263, 2830–2839.
Sweetser, B., Nonet, M., and Young, R.A. (1987) Proc. Natl. Acad. Sci. USA 84, 1192–1196.
Mann, C., Buhler, J.-M., Treich, I., and Sentenac, A. (1987) Cell 48, 627–637.
Biggs, J., Searles, L.L., and Greenleaf, A.L. (1985) Cell 42, 611–621.
Jokerst, R.S., Weeks, J.R., Zehring, W.A., and Greenleaf, A.L. (1989) Mol. Gen. Genet. 215, 266–275.
Falkenburg, D., Dworniczak, B., Faust, D.M., and Bautz, E.K.F. (1987) J. Mol. Biol. 195, 929–937.
Faust, D.M., Renkawitz-Pohl, R., Falkenburg, D., Gasch, A., Bialojan, S., Young, R.A., and Bautz, E.K.F. (1986) EMBO J. 5, 741–746.
Kontermann, R., Sitzler, S., Seifarth, W., Petersen, G., and Bautz, E.K.F. (1989) Mol. Gen. Genet, (in press).
Ollis, D.L., Brick, P., Hamlin, R., Xuong, N.G., and Steitz, T.A. (1985) Nature 313, 762–766.
Ollis, D.L., Kline, C., and Steitz, T.A. (1985) Nature 313, 818–819.
Vincent, A. (1986) Nucleic Acids Res. 14, 4385–4391.
Berg, J.M. (1986) Science 232, 485–487.
Klug, A., and Rhodes, D. (1987) TIBS 12, 464–469.
Broyles, S.S., and Moss, B. (1986) Proc. Natl. Acad. Sci. USA 83, 3141–3145.
Wu, F.Y.-H., and Wu, C.-W. (1981) In Advances in Inorganic Biochemistry, Vol. 3, 143–166, Eichhorn, G.L., and Marzilli, L.G. (eds.). Elsevier/North-Holland, New York.
Fukuda, R., and Ishihama, A. (1974) J. Mol. Biol. 87, 532–540.
Gundelfinger, E.D. (1983) FEBS Lett. 157, 133–138.
Horikoshi, M., Tamura, M., Sekimizu, K., Obimato, M., and Natori, S. (1983) J. Biochem. 94, 1761–1767.
Bartolomei, M.S., Halden, N.F., Cullen, C.R., and Corden, J.L. (1988) J. Mol. Cell. Biol. 8, 330–339.
Gross, G., Fields, D.A., and Bautz, E.K.F. (1976) Mol. Gen. Genet. 147, 337–341.
Huet, J., Phalente, L., Buttin, G., Sentenac, A., and Fromageot, P. (1982) EMBO J. 1, 1193–1198.
Huet, J., Riva, M., Sentenac, A., and Fromageot, P. (1985) J. Biol. Chem. 260, 15304–15310.
Buhler, J.-M., Riva, M., Mann, C.A., Thuriaux, P., Mémet, S., Micouin, J.Y., Treich, I., Mariotte, S., and Sentenac, A. (1987) In RNA Polymerase and the Regulation of Transcription, 25–36, Reznikoff, W.S., et al. (eds.). Elsevier Science Publishing Co., Amsterdam.
Grachev, M.A., Hartmann, G.R., Maximova, T.G., Mustaev, A.A., Schaffner, A.R., Sieber, H., and Zaychikov, E.F. (1986) FEBS Lett. 200, 287–290.
Riva, M., Schäffner, A.R., Sentenac, A., Hartmann, G.R., Mustaev, A.A., Zaychikov, E.F., and Grachev, M.A. (1987) J. Biol. Chem. 262, 14377–14380.
Allison, L.A., Wong, J.K.-C., Fitzpatrick, V.D., Moyle, M., and Ingles, C.J. (1988) J. Mol. Cell. Biol. 8, 321–329.
Zehring, W.A., Lee, J.M., Weeks, J.R., Jokerst, R.S., and Greenleaf, A.L. (1988) Proc. Natl. Acad. Sci. USA 85, 3698–3702.
Dezélée, S., Wyers, F., Sentenac, A., and Fromageot, P. (1976) Eur. J. Biochem. 65, 543–552.
Greenleaf, A.L., Haars, R., and Bautz, E.K.F. (1976) FEBS Lett. 71, 205–208.
Nonet, M., Sweetser, D., and Young, R.A. (1987) Cell 50, 909–915.
Christmann, J.L., and Dahmus, M.E. (1981) J. Biol. Chem. 256, 11798–11803.
Cadena, D.L., and Dahmus, M.E. (1987) J. Biol. Chem. 262, 12468–12474.
Price, D.H., Sluder, A.E., and Greenleaf, A.L. (1987) J. Biol. Chem. 262, 3244–3255.
Greenleaf, A.L. (1983) J. Biol. Chem. 258, 13403–13406.
Greenleaf, A.L., Jokerst, R.S., Zehring, W.A., Hamilton, B.J., Weeks, J.R., Sluder, A.E., and Price, D.H. (1987) In RNA Polymerase and the Regulation of Transcription, 459–463, Reznikoff, W.S., et al. (eds.). Elsevier Science Publishing Co., New York.
Bartolomei, M.S., and Corden, J.L. (1987) J. Mol. Cell. Biol. 7, 586–594.
Himmelfarb, H.J., Simpson, E.M., and Friesen, J.D. (1987) Mol. Cell. Biol. 7, 2155–2164.
Nonet, M., Scafe, C., Sexton, J.J., and Young, R. (1987) Mol. Cell. Biol. 7, 1602–1611.
Gudenus, R., Mariotte, S., Moenne, A., Ruet, A., Mémet, S., Buhler, J.-M., Sentenac, A., and Thuriaux, P. (1988) Genetics 119, 517–526.
Sollner-Webb, B., and Tower, J. (1986) Annu. Rev. Biochem. 55, 801–830.
Geiduschek, E.P., and Tocchini-Valentini, G. (1988) Annu. Rev. Biochem. 57, 873–914.
Dynan, W.S., and Tjian, R. (1985) Nature 316, 774–778.
Ptashne, M. (1988) Nature 335, 683–689.
Ptashne, M. (1986) Nature 322, 697–701.
Maniatis, T., Goodbourn, S., and Fisher, J. (1987) Science 236, 1237–1245.
Guarente, L. (1988) Annu. Rev. Genet. 21, 425–452.
Struhl, K. (1987) Cell 49, 295–297.
Jones, M.H., Learned, R.M., and Tjian, R. (1988) Proc. Natl. Acad. Sci. USA 85, 669–673.
Haltiner, M.M., Smale, S.T., and Tjian, R.T. (1986) Mol. Cell. Biol. 6, 227–235.
Clos, J., Buttgereit, D., and Grummt, I. (1986) Proc. Natl. Acad. Sci. USA 83, 604–608.
Kuhn, A., and Grummt, I. (1987) EMBO J. 6, 3487–3492.
Kownin, P., Batemann, E., and Paule, M.R. (1987) Cell 50, 693–699.
Windle, J.J., and Sollner-Webb, B. (1986) Mol. Cell. Biol. 6, 4585–4593.
Learned, R.M., Learned, T.K., Haltiner, M.M., and Tjian, R. (1986) Cell 45, 847–857.
Tower, J., Culotta, V., and Sollner-Webb, B. (1986) Mol. Cell. Biol. 6, 3451–3462.
Bateman, E., lida, C.T., Kownin, P., and Paule, M.R. (1985) Proc. Natl. Acad. Sci. USA 82, 8004–8008.
Bell, S.P., Learned, R.M., Jantzen, H.-M., and Tjian, R. (1988) Science 241, 1192–1197.
Sommerville, J. (1984) Nature 310, 189–190.
Grummt, I., Roth, E., and Paule, M.R. (1982) Nature 296, 173–174.
Kohorn, B., and Rae, P. (1982) Proc. Natl. Acad. Sci. USA 79, 1501–1505.
Culotta, V., Wilkinson, J.K., and Sollner-Webb, B. (1987) Proc. Natl. Acad. Sci. USA 84, 7498–7502.
Tower, J., and Sollner-Webb, B. (1987) Cell 50, 873–883.
Helman, J.D., and Chamberlin, M.J. (1988) Annu. Rev. Biochem. 57, 839–872.
Losick, R., and Pero, J. (1981) Cell 25, 582–584.
Henderson, S., and Sollner-Webb, B. (1986) Cell 47, 891–900.
Grummt, I., Kuhn, A., Bartsch, 1., and Rosenbauer, H. (1986) Cell 47, 901–911.
McStay, B., and Reeder, R.H. (1986) Cell 47, 913–920.
Baker, S.M., and Piatt, T. (1986) Cell 47, 839–840.
Piatt, T. (1986) Annu. Rev. Biochem. 55, 339–372.
Grummt, I., Rosenbauer, H., Niedermeyer, I., Maier, U., and Öhrlein, A. (1986) Cell 45, 837–846.
Bartsch, I., Schoneberg, C., and Grummt, I. (1988) Mol. Cell. Biol. 8, 3891–3897.
Kuhn, A., Norman, A., Bartsch, 1., and Grummt, 1. (1988) EMBO J. 7, 1497–1502.
Breathnach, R., and Chambon, P. (1981) Annu. Rev. Biochem. 50, 349–383.
Seguin, C., and Hamer, D.H. (1987) Science 235, 1383–1387.
Valerio, D., Duyvesteyn, M.G.C., Dekker, B.M.M., Weeda, G., Berkvens, T.M., van der Voorn, L., van Ormondt, H., and van der Eb, A.J. (1985) EMBO J. 4, 437–443.
Queen, C., and Baltimore, D. (1983) Cell 33, 741–748.
Hatzopoulos, A.K., Schlokat, U., and Gruss, P. (1988) In Frontiers in Transcription and Splicing, IRL Press (in press).
Sigler, P.B. (1988) Nature 333, 210–212.
Ma, J., and Ptashne, M. (1988) Cell 55, 443–446.
Kadesch, F.R., and Chamberlin, M.J. (1982) J. Biol. Chem. 257, 5286–5295.
Dedrick, R.L., Kane, M.C., and Chamberlin, M.J. (1987) J. Biol. Chem. 262, 9098–9108.
Sluder, A.E., Price, D.H., and Greenleaf, A.L. (1988) J. Biol. Chem. 263, 9917–9925.
Sopta, M., Carthew, R.W., and Greenblatt, J. (1985) J. Biol. Chem. 260, 10353–10360.
Nakanishi, Y., Mitsuhashi, Y., Sekimizu, K., Yokoi, H., Tanaka, Y., Horikishi, M., and Natori, S. (1981) FEBS Lett. 130, 69–72.
Zheng, X.-M., Moncollin, V., Egly, J.-M., and Chambon, P. (1987) Cell 50, 361–368.
Birnstiel, M.L., Busslinger, M., and Strub, K. (1985) Cell 41, 349–359.
Folk, W.R. (1988) Genes Dev. 2, 373–375.
Sollner-Webb, B. (1988) Cell 52, 153–154.
Yoshinaga, S.K., Boulanger, P.A., and Berk, A.J. (1987) Proc. Natl. Acad. Sci. USA 84, 3585–3589.
Smith, D.R., Jackson, I.J., and Brown, D.D. (1984) Cell 37, 645–652.
Burke, D.J., Schaack, J., Sharp, S., and Söil, D. (1983) J. Biol. Chem. 258, 15224–15231.
Wolffe, A.P., and Brown, D.D. (1988) Science 241, 1626–1632.
Wolffe, A.P., Jordan, E., and Brown, D.D. (1986) Cell 44, 381–389.
Wolffe, A.P., and Brown, D.D. (1987) In RNA Polymerase and the Regulation of Transcription, 465–468, Reznikoff, W.S., et al. (eds.). Elsevier Science Publishing Co., New York.
Bark, C., Weller, P., Zabielski, J., Janson, L., and Petterson, U. (1987) Nature 328, 356–359.
Carbon, P., Murgo, S., Ebel, J.-P., Krol, A., Tebb, G., and Mattaj, I. (1987) Cell 51, 71–79.
Sajjadi, F.G., Miller, R.C. Jr., and Spiegelman, G.B. (1987) Mol. Gen. Genet. 206, 276–284.
Garcia, A.D., O’Connell, A.M., and Sharp, S.J. (1987) Mol. Cell. Biol. 7, 2046–2051.
Murphy, S., Di Liegro, C., and Melli, M. (1987) Cell 51, 81–87.
Simson, M.C., Fisch, T.M., Benecke, B.J., Nevins, J.R., and Heintz, N. (1988) Cell 52, 723–729.
Ullu, E., and Weiner, A.M. (1985) Nature 318, 371–374.
Morry, M.J., and Harding, J.D. (1986) Mol. Cell. Biol. 6, 105–115.
Dahlberg, J.E., and Lund, E. (1987) In Structure and Functions of Small Nuclear Ribonucleoprotein Particles, 38–70, Birnstiel, M.L. (ed.). Springer-Verlag, Heidelberg.
Kunkel, G.R., Maser, R.L., Calvet, J.P., and Pederson, T. (1986) Proc. Natl. Acad. Sci. USA 83, 8575–8579.
Reddy, R., Henning, D., Das, G., Harles, M., and Wright, D. (1987) J. Biol. Chem. 262, 75–81.
Krol, A., Carbon, P., Ebel, J.-P., and Appel, B. (1987) Nucleic Acids Res. 15, 2463–2478.
Das, G., Henning, D., Wright, D., and Reddy, R. (1988) EMBO J. 7, 503–512.
Kunkel, G.R., and Pederson, T. (1988) Genes Dev. 2, 196–204.
Kleinert, H., and Benecke, B.-J. (1988) Nucleic Acids Res. 4, 1319–1331.
Mattaj, I.W., Dathan, N.A., Parry, H.D., Carbon, P., and Krol, A. (1988) Cell 55, 432–442.
Chung, J., Sussman, D.J., Zeller, R., and Leder, P. (1987) Cell 51, 1001–1008.
Bentley, D., and Groudine, M. (1988) Cell 53, 245–256.
Sisodia, S.S., Sollner-Webb, B., and Cleveland, D. (1987) Mol. Cell. Biol. 7, 3602–3612.
Bogenhagen, B.F., and Brown, D.D. (1981) Cell 24, 261–270.
Cozzarelli, N.R., Gerrard, S.P., Schlissel, M., Brown, D.D., and Bogenhagen, D.F. (1983) Cell 34, 829–845.
Mazabraud, A., Scherly, D., Müller, F., Rungger, D., and Clarkson, S.G. (1987) J. Mol. Biol. 197, 1–11.
Gottlieb, E., and Steitz, J.A. (1987) In RNA Polymerase and the Regulation of Transcription, 465–468, Reznikoff, W.S., et al. (eds.). Elsevier Science Publishing Co., New York.
Gottlieb, E., and Steitz, J.A. (1988) EMBO J. (in press).
Rappaport, J., Cho, K., Saltzman, A., Prenger, J., Golomb, M., and Weinman, R. (1988) Mol. Cell. Biol. 8, 3136–3142.
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1989 Springer-Verlag New York Inc.
About this chapter
Cite this chapter
Bautz, E.K.F., Petersen, G. (1989). Eukaryotic RNA Polymerases. In: Adolph, K.W. (eds) Molecular Biology of Chromosome Function. Springer, New York, NY. https://doi.org/10.1007/978-1-4612-3652-8_7
Download citation
DOI: https://doi.org/10.1007/978-1-4612-3652-8_7
Publisher Name: Springer, New York, NY
Print ISBN: 978-1-4612-8192-4
Online ISBN: 978-1-4612-3652-8
eBook Packages: Springer Book Archive