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Part of the book series: Lecture Notes in Statistics ((LNS,volume 133))

Abstract

Bayesian models involving Dirichlet process mixtures are at the heart of the modern nonparametric Bayesian movement. Much of the rapid development of these models in the last decade has been a direct result of advances in simulation-based computational methods. Some of the very early work in this area, circa 1988-1991, focused on the use of such nonparametric ideas and models in applications of otherwise standard hierarchical models. This chapter provides some historical review and perspective on these developments, with a prime focus on the use and integration of such nonparametric ideas in hierarchical models. We illustrate the ease with which the strict parametric assumptions common to most standard Bayesian hierarchical models can be relaxed to incorporate uncertainties about functional forms using Dirichlet process components, partly enabled by the approach to computation using MCMC methods. The resulting methodology is illustrated with two examples taken from an unpublished 1992 report on the topic.

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References

  • Andrews, D.F. and Mallows, C.L. (1974), “Scale mixtures of normal distributions,”Journal of the Royal Statistical Society Series B36, 99–102.

    MathSciNet  MATH  Google Scholar 

  • Antoniak, C.E. (1974), “Mixtures of Dirichlet processes with applications to nonparametric problems,”The Annals of Statistics2, 1152–1174.

    Article  MathSciNet  MATH  Google Scholar 

  • Blackwell, D., and MacQueen, J.B. (1973), “Ferguson Distribution via Polya Urn Schemes,”The Annals of Statistics1, 353–355.

    Article  MathSciNet  MATH  Google Scholar 

  • Brunner, L.J. (1995), “ Bayesian linear regression with error terms that have symmetric unimodal densities,”Journal of Nonparametric Statistics4, 335–348.

    Article  MathSciNet  MATH  Google Scholar 

  • Bush, C.A. and MacEachern, S.N. (1996), “A semi-parametric Bayesian model for randomized block designs,”Biometrika83, 275–285.

    Article  MATH  Google Scholar 

  • Carlin, B.P., and Poison, N.G. (1991), “An expected utility approach to influence diagnostics,”Journal OftheAmericanStatisticalAssociation, 86, 1013–1021.

    Article  Google Scholar 

  • Doss, H. (1994), `Bayesian nonparametric estimation for incomplete data via successive substitution sampling,“The Annals of Statistics22, 1763–1786.

    Article  MathSciNet  MATH  Google Scholar 

  • Erkanli, A., Stangl, D., and Müller, P. (1993), “Analysis of ordinal data by the mixture of probit links,”Discussion Paper #93-A01ISDS, Duke University.

    Google Scholar 

  • Escobar, M.D. (1988), Estimating the means of several normal populations by nonparametric estimation of the distribution of the means, Unpublished dissertation, Yale University.

    Google Scholar 

  • Escobar, M.D. (1992), Invited comment of “Bayesian analysis of mixtures: sonne results on exact estimability and identification,” by Florens, Mouchart, and Rolin.Bayesian Statistics 4(eds: J.M. Bernardo, J.O. Berger, A.P. Dawid and A.F.M. Smith). Oxford: University press, 142–144.

    Google Scholar 

  • Escobar, M.D. (1994), “Estimating normal means with a Dirichlet process prior,”Journal of the American Statistical Association89, 268–277.

    Article  MathSciNet  MATH  Google Scholar 

  • Escobar, M.D., (1995), “Nonparametrics Bayesian Methods in Hierarchical Models,”The Journal of Statistical Inference and Planning43, 97106.

    MathSciNet  Google Scholar 

  • Escobar, M.D. (1998), “The effect of the prior on nonparametric Bayesian methods,” (in preparation).

    Google Scholar 

  • Escobar, M.D. and West, M. (1995), “Bayesian density estimation and inference using mixtures,”Journal of the American Statistical Association90, 577–588.

    Article  MathSciNet  MATH  Google Scholar 

  • Evans, M. and Swartz, T. (1995) “Methods for approximating integrals in statistics with special emphasis on Bayesian integration problems - with discussion,”Statistical Science10, 254–272.

    Article  MathSciNet  MATH  Google Scholar 

  • Ferguson, T.S. (1973), “A Bayesian analysis of some nonparametric problems,”The Annals of Statistics 1209–230.

    Article  MathSciNet  MATH  Google Scholar 

  • Ferguson, T.S. (1974), “Prior distributions on spaces of probability measures,”The Annals of Statistics2, 615–629.

    Article  MathSciNet  MATH  Google Scholar 

  • Freedman, D. (1963), “On the asymptotic behavior of Bayes estimates in the discrete case,”Annals of Mathematical Statistics34, 1386–1403.

    Article  MathSciNet  Google Scholar 

  • Gelfand, A.E., Hills, S.E., Racine-Poon, A., and Smith, A.F.M. (1990), “Illustration of Bayesian inference in normal data models using Gibbs sampling.”Journal Of the American Statistical Association85, 972–985.

    Article  Google Scholar 

  • George, E.I., Makov, U.E., and Smith, A.F.M. (1994), “Fully Bayesian hierarchical analysis for exponential families via Monte Carlo computation,”Aspects of Uncertainty: A Tribute to D.V. Lindley (eds: AFM Smith and PR Freeman), London: John Wiley and Sons, 181–199.

    Google Scholar 

  • Gilks, W.R., Richardson, S., and Spiegelhalter, D.J., eds. (1996)Markov Chain Monte Carlo in PracticeLondon: Chapman and Hall.

    MATH  Google Scholar 

  • Kuo, L. and Mallick, B. (1998), “Bayesian semiparametric inference for the accelerated failure,”Canadian Journal of Statisticsto appear.

    Google Scholar 

  • Liu, J.S. (1996), “Nonparametric hierarchical Bayes via sequential imputations,”The Annals of Statistics24, 911–930.

    Article  MathSciNet  MATH  Google Scholar 

  • MacEachern, S.N. (1988), Sequential Bayesian bioassay design. Unpublished dissertation. University of Minnesota.

    Google Scholar 

  • MacEachern, S.N. (1994), “Estimating normal means with a conjugate style Dirichlet process prior,”Communications in Statistics: Simulationand Computation, 23, 727–741.

    Article  MathSciNet  MATH  Google Scholar 

  • MacEachern, S.N. and Müller, P. (1998), “Estimating mixture of Dirichlet process models,”Journal of Computational and GraphicalStatistics, to appear.

    Google Scholar 

  • Mukhopadhyay, S. and Gelfand, A.E. (1997), “Dirichlet process mixed generalized linear models,”Journal Of the American Statistical Association92, 633–639.

    Article  MathSciNet  MATH  Google Scholar 

  • Müller, P., Erkanli, A., and West, M. (1996), “Bayesian curve fitting using multivariate normal mixtures,”Biometrika83, 67–79.

    Article  MathSciNet  MATH  Google Scholar 

  • Müller, P., West, M., and MacEachern, S.N. (1997), “Bayesian models for non-linear auto-regressions,”Journal of Time Series Analysis(in press).

    Google Scholar 

  • Naylor, J.C. and Smith, A.F.M. (1982), “Applications of a method for the efficient computation of posterior distributions,”AppliedStatistics, 31, 214–235.

    Article  MathSciNet  MATH  Google Scholar 

  • Pauler, D.K., Escobar, M.D., Sweeney, J.A., and Greenhouse, J. (1996), “Mixture Models for Eye-Tracking Data: A Case Study”Statistics in Medicine15, 1365–1376.

    Article  Google Scholar 

  • Roeder, K., Escobar, M., Kadane, J., and Balazs, I., (1998), “Measuring Heterogeneity in Forensic Databases”Biometrikato appear.

    Google Scholar 

  • Sweeney, J.A., Clementz, B.A., Escobar, M.D., Li, S., Pauler, D.K., and Haas, G.L. (1993), “Mixture analysis of pursuit eye tracking dysfunction in schizophrenia,”Biological Psychiatry34, 331–340.

    Article  Google Scholar 

  • Tanner, M.A. and Wong, W.H. (1987), “The calculation of posterior distributions by data augmentation (with discussion),”Journal of the American Statistical Association82, 528–550.

    Article  MathSciNet  MATH  Google Scholar 

  • Tomlinson, G. (1998), Analysis of densities with Dirichlet process priors. Unpublished dissertation. University of Toronto.

    Google Scholar 

  • Turner, D.A., and West, M. (1993), “Statistical analysis of mixtures applied to postsynpotential fluctuations,”Journal of Neuroscience Methods47, 1–23.

    Article  Google Scholar 

  • West, M. (1987), “On scale mixtures of normal distributions,”Biometrika74, 646–648.

    Article  MathSciNet  MATH  Google Scholar 

  • West, M. (1990), “Bayesian kernel density estimation,”ISDS Discussion Paper #90-A 02Duke University.

    Google Scholar 

  • West, M. (1992), “Hyperparameter estimation in Dirichlet process mixture models,”ISDS Discussion Paper #92-A03Duke University.

    Google Scholar 

  • West, M. (1997), “Hierarchical mixture models in neurological transmission analysis,”Journal Of the American Statistical Association92, 587–608.

    Article  MathSciNet  MATH  Google Scholar 

  • West, M., and Cao, G. (1993), “Assessing mechanisms of neural synaptic activity,” InBayesian Statistics in Science and Technology: Case Studies(eds: C.A. Gatsonis, J.S. Hodges, R.E. Kass, and N.D. Singpur-walla), New York: Springer-Verlag.

    Google Scholar 

  • West, M., Müller, P., and Escobar, M.D. (1994), “Hierarchial Priors and Mixture Models, with Applications in Regression and Density Estimation,”Aspects of Uncertainty: A Tribute to D. V. Lindley(eds: AFM Smith and PR Freeman), London: John Wiley and Sons, 363–386.

    Google Scholar 

  • West, M., and Turner, D.A. (1994), “Deconvolution of mixtures in analysis of neural synaptic transmission,”The Statistician43, 31–43.

    Article  Google Scholar 

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Escobar, M.D., West, M. (1998). Computing Nonparametric Hierarchical Models. In: Dey, D., Müller, P., Sinha, D. (eds) Practical Nonparametric and Semiparametric Bayesian Statistics. Lecture Notes in Statistics, vol 133. Springer, New York, NY. https://doi.org/10.1007/978-1-4612-1732-9_1

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  • DOI: https://doi.org/10.1007/978-1-4612-1732-9_1

  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-0-387-98517-6

  • Online ISBN: 978-1-4612-1732-9

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