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Sorghum and Sugarcane Proteomics

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Genomics of the Saccharinae

Part of the book series: Plant Genetics and Genomics: Crops and Models ((PGG,volume 11))

Abstract

Proteomics is recognised as an important tool for global, translational level, gene expression studies. In comparison to animal studies, plant proteomics lags far behind. This chapter gives a brief review of the current state of plant proteomics. This is followed by a report of the application of in silico bioinformatics approaches in Saccharum spp. (sugarcane) protein subcellular localisation studies. The first comprehensive attempt at Saccharinae proteome work was done on Sorghum bicolor, commonly referred to as sorghum. Data from two-dimensional polyacrylamide gel electrophoresis (2D PAGE)- and mass spectrometric (MS)-based proteomics tools used to analyse global protein accumulation profiles of leaf, sheath and root tissues from two sorghum varieties, AS6 and MN1618, is described. Identified sorghum proteins are grouped into appropriate functional categories and their subcellular localisations are predicted using various bioinformatic tools.

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Acknowledgments

We would like to thank Professor Antoni Slabas and Dr. Bill Simon of Durham University for the MS–MS protein identification data, the National Research Foundation of South Africa (NRF) and the South African Department of Science and Technology (DST) for research funds.

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  1. Proteomics Research Group, Department of Biotechnology, University of the Western Cape, X17, Bellville, 7535, South Africa

    Bongani Kaiser Ndimba & Rudo Ngara

  2. Proteomics Research and Services Unit, Biotechnology Platform, Agricultural Research Council, ARC Infruitec-Nietvoorbij Lelie Street, Idas Valley, X5026, Stellenbosch, 7599, South Africa

    Bongani Kaiser Ndimba

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  1. Plant Genome Mapping Laboratory, Departments of Crop and Soil Science,, University of Georgia, 111 Riverbend Road, Athens, 30602, Georgia, USA

    Andrew H. Paterson

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© 2013 Springer Science+Business Media New York

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Ndimba, B.K., Ngara, R. (2013). Sorghum and Sugarcane Proteomics. In: Paterson, A. (eds) Genomics of the Saccharinae. Plant Genetics and Genomics: Crops and Models, vol 11. Springer, New York, NY. https://doi.org/10.1007/978-1-4419-5947-8_7

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