Summary
This chapter uses the LH2 complex from Rhodopseudomonas acidophila strain 10050 as an example to describe the current understanding of the structure of purple bacterial peripheral antenna complexes. It summarizes both what is and what is not understood. So far the structures of ‘standard’ LH2 complexes, such as those from Rhodopseudomonas acidophila, are rather well characterized. In contrast, there is a dearth of structural information on complexes with more unusual spectroscopic properties. There is also very little information available on how these antenna complexes are assembled.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Abbreviations
- (B)Chl:
-
(bacterio)chlorophyll a
- AFM:
-
atomic force microscopy
- B:
-
bulk
- Chr. :
-
Chromatium
- DPG:
-
diphosphatidylglycerol
- HL:
-
high light
- HPTO:
-
heptane-1,2,3-triol
- ICM:
-
intracytoplasmic membrane
- LDAO:
-
lauryl dimethyl amine-N-oxide
- LH:
-
light-harvesting
- LL:
-
low light
- NIR:
-
near infra-red
- PC:
-
phosphatidylcholine
- PE:
-
phosphatidylethanolamine
- Phs. :
-
Phaeospirillum
- PSU:
-
photosynthetic unit
- Rba. :
-
Rhodobacter
- RC:
-
reaction center
- Rdv. :
-
Rhodovulum
- Rps. :
-
Rhodopseudomonas
- Rsp. :
-
Rhodo spirillum
- Rvi. :
-
Rubrivivax
- UDAO:
-
N,N-dimethyundecylamine-N-oxide
- UPB:
-
upper pigmented band
References
Angerhofer A, Cogdell RJ and Hipkins MF (1986) A spectral characterization of the light-harvesting pigment-protein complexes from Rhodopseudomonas acidophila. Biochim Biophys Acta 848: 333–341
Bahatyrova S, Frese RN, Siebert CA, Olsen JD, van der Werf KO, van Grondelle R, Niederman RA, Bullough PA, Otto C and Hunter CN (2004) The native architecture of aphotosynthetic membrane. Nature 430: 1058–1062
Bauer CE, Buggy JJ, Yang ZM and Marrs BL (1991) The superoperonal organization of genes for pigment biosynthesis and reaction center proteins is a conserved feature in Rhodobacter capsulatus — analysis of overlapping bchB and puhA transcripts. Mol Gen Gen 228: 433–444
Bérard J, Bélanger G and Gingras G (1989) Mapping of the puh messenger-RNAs from Rhodospirillum rubrum — evidence for tandem promoters. J Biol Chem 264: 10897–10903
Cherezov V, Clogston J, Papiz MZ and Caffrey M (2006) Room to move: Crystallizing membrane proteins in swollen lipidic mesophases. J Mol Biol 357: 1605–18
Cogdell RJ, Hawthornthwaite AM, Evans MB, Ferguson LA, Kerfeld C, Thornber JP, van Mourik F and van Grondelle R (1990) Isolation and characterization of an unusual antenna complex from the marine purple sulfur photosynthetic bacterium Chromatium purpuratum Bn5500. Biochim Biophys Acta 1019: 239–244
Deinum G, Otte SCM, Gardiner AT, Aartsma TJ, Cogdell RJ and Amesz J (1991) Antenna organization of Rhodopseudomonas acidophila — a study of the excitation migration. Biochim Biophys Acta 1060: 125–131
Evans K, Fordham-Skelton AP, Mistry H, Reynolds CD, Lawless AM and Papiz MZ (2005) A bacteriophytochrome regulates the synthesis of LH4 complexes in Rhodopseudomonas palustris. Photosynth Res 85: 169–180
Fleming GR and van Grondelle R (1997) Femtosecond spectroscopy of photosynthetic light-harvesting systems. Cur Op Struc Biol 7: 738–748
Fowler GJ, Visschers RW, Grief GG, van Grondelle R and Hunter CN (1992) Genetically modified photosynthetic antenna complexes with blueshifted absorbance bands. Nature 355: 848–850
Freer A, Prince S, Sauer K, Papiz M, Hawthornthwaite-Lawless A, McDermott G, Cogdell R and Isaacs NW (1996) Pigment-pigment interactions and energy transfer in the antenna complex of the photosynthetic bacterium Rhodopseudomonas acidophila. Structure 4: 449–462
Gall A and Robert B (1999) Characterization of the different peripheral light-harvesting complexes from high- and low-light grown cells from Rhodopseudomonas palustris. Biochemistry 38: 5185–5190
Gall A, Gardiner AT, Cogdell RJ and Robert B (2006) Carotenoid stoichiometry in the LH2 crystal: No spectral evidence for the presence of the second molecule in the α/β-apoprotein dimer. FEBS Lett 580: 3841–3844
Gardiner AT, Cogdell RJ and Takaichi S (1993) The effect of growth-conditions on the light-harvesting apparatus in Rhodopseudomonas acidophila. Photosynth Res 38: 159–167
Gardiner AT, MacKenzie RC, Barrett SJ, Kaiser K and Cogdell RJ (1996) The purple photosynthetic bacterium Rhodopseudomonas acidophila contains multiple puc peripheral antenna complex (LH2) genes: Cloning and initial characterisation of four beta/alpha pairs. Photosynth Res 49: 223–235
Germeroth L, Lottspeich F, Robert B and Michel H (1993) Unexpected similarities of the B800–850 light-harvesting complex from Rhodospirillum molischianum to the B870 light-harvesting complexes from other purple photosynthetic bacteria. Biochemistry 32: 5615–5621
Gibson LCD, McGlynn P, Chaudhri M and Hunter CN (1992) A putative anaerobic coproporphyrinogen III oxidase in Rhodobader sphaeroides II Genetic analysis of a region of the genome encoding hemF and the puc operon. Mol Micro 6: 3171–3186
Gonçalves RP, Bernadac A, Sturgis JN and Scheuring S (2005a) Architecture of the native photosynthetic apparatus of Phaeospirillum molischianum. J Struc Biol 152: 221–228
Gonçalves RP, Busselez J, Lévy D, Seguin J and Scheuring S (2005b) Membrane insertion of Rhodopseudomonas acidophila light harvesting complex 2 investigated by high resolution AFM. J Struc Biol 149: 79–86
Halloren E, McDermott G, Lindsay JG, Miller C, Freer AA, Isaacs NW and Cogdell RJ (1995) Studies on the light-harvesting complexes from the thermotolerant purple bacterium Rhodopseudomonas cryptolactis. Photosynthesis Research 44: 149–155
Hartigan N, Tharia HA, Sweeney F, Lawless AM and Papiz MZ (2002) The 7.5-Å electron density and spectroscopic properties of a novel low-light B800 LH2 from Rhodopseudomonas palustris. Biophys J 82: 963–977
Hess S, Chachisvilis M, Timpmann K, Jones MR, Fowler GJS, Hunter CN and Sundström V (1995) Temporally and spectrally resolved subpicosecond energy transfer within the peripheral antenna complex (LH2) and from LH2 to the core antenna complex in photosynthetic purple bacteria. PNAS 92: 12333–12337
Hiraishi A, Urata K and Satoh T (1995) A new genus of marine budding phototrophic bacteria, Rhodobium gen-nov., which includes Rhodobium orientis Sp-Nov and Rhodobium marinum Comb-Nov. Int J Syst Bacteriol 45: 226–234
Hunter CN, Tucker JD and Niederman RA (2005) The assembly and organization of photosynthetic membranes in Rhodobader sphaeroides. Photochem Photobiol Sci 4: 1023–1027
Janosi L, Keer H, Kosztin I and Ritz T (2006) Influence of subunit structure on the oligomerization state of light-harvesting complexes: A free energy calculation study. Chem Phys 323: 117–128
Koepke J, Hu X, Muenke C, Schulten K and Michel H (1996) The crystal structure of the light-harvesting complex II (B800–850) from Rhodospirillum molischianum. Structure 4: 581–97
Lang HP and Hunter CN (1994) The relationship between carotenoid biosynthesis and the assembly of the light-harvesting LH2 complex in Rhodobader sphaeroides. Biochem J 298: 197–205
Larimer FW, Chain P, Hauser L, Lamerdin J, Malfatti S, Do L, Land ML, Pelletier DA, Beatty JT, Lang AS, Tabita FR, Gibson JL, Hanson TE, Bobst C, Torres J, Peres C, Harrison FH, Gibson J and Harwood CS (2004) Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nature Biotechnology 22: 55–61
LeBlanc HN and Beatty JT (1996) Topological analysis of the Rhodobader capsulatus PucC protein and effects of C-terminal deletions on light-harvesting complex II. J Bact 178: 4801–4806
McDermott G, Prince SM, Freer AA, Hawthornthwaite-Lawless AM, Papiz MZ, Cogdell RJ and Isaacs NW (1995) Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria. Nature 374: 517–521
McLuskey K, Prince SM, Cogdell RJ and Isaacs NW (2001) The crystallographic structure of the B800–820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050. Biochemistry 40: 8783–8789
Monger TG and Parson WW (1977) Singlet-triplet fusion in Rhodopseudomonas sphaeroides chromatophores — probe of organization of photosynthetic apparatus. Biochim Biophys Acta 460: 393–407
Montoya G, Cyrklaff M and Sinning I (1995) Two-dimensional crystallization and preliminary structure analysis of light harvesting II (B800–850) complex from the purple bacterium Rhodovulum sulfidophilum. J Mol Biol 250: 1–10
Nagae H, Kakitani T, Katoh T and Mimuro M (1993) Calculation of the excitation transfer-matrix elements between the S 2 or S 1 state of carotenoid and the S(2) or S(1) state of bacteriochlorophyll. J Chem Phys 98: 8012–8023
Niederman RA, Mallon DE and Parks LC (1979) Membranes of Rhodopseudomonas sphaeroides: Isolation of a fraction enriched in newly synthesized bacteriochlorophyllalpha-protein complexes. Biochim Biophys Acta 555: 210–220
Papiz MZ, Prince SM, Howard T, Cogdell RJ and Isaacs NW (2003) The structure and thermal motion of the B800–850 LH2 complex from Rps. acidophila at 2.0 Å resolution and 100K: New structural features and functionally relevant motions. J Mol Biol 326: 1523–38
Pfennig N (1969) Rhodopseudomonas acidophila, Sp N, a new species of budding purple nonsulfur bacteria. J Bact 99: 597–602
Prince SM, Papiz MZ, Freer AA, McDermott G, Hawthornthwaite-Lawless AM, Cogdell RJ and Isaacs NW (1997) Apoprotein structure in the LH2 complex from Rhodopseudomonas acidophila strain 10050: modular assembly and protein pigment interactions. J Mol Biol 268: 412–423
Prince SM, Howard TD, Myles DA, Wilkinson C, Papiz MZ, Freer AA, Cogdell RJ and Isaacs NW (2003) Detergent structure in crystals of the integral membrane light-harvesting complex LH2 from Rhodopseudomonas acidophila strain 10050. J Mol Biol 326: 307–315
Reilly PA and Niederman RA (1986) Role of apparent membrane growth initiation sites during photosynthetic membrane-development in synchronously dividing Rhodopseudomonas sphaeroides. J Bact 167: 153–159
Russell NJ, Coleman JK, Howard TD, Johnston E and Cogdell RJ (2002) Rhodopseudomonas acidophila strain 10050 contains photosynthetic LH2 antenna complexes that are not enriched with phosphatidylglycerol, and the phospholipids have a fatty acyl composition that is unusual for purple non-sulfur bacteria. Biochim Biophys Acta 1556: 247–253
Scheuring S, Reiss-Husson F, Engel A, Rigaud JL and Ranck JL (2001) High-resolution AFM topographs of Rubrivivax gelatinosus light-harvesting complex LH2. EMBO J 20: 3029–3035
Scheuring S, Seguin J, Marco S, Lévy D, Breyton C, Robert B and Rigaud JL (2003) AFM characterization of tilt and intrinsic flexibility of Rhodobacter sphaeroides light harvesting complex 2 (LH2). J Mol Biol 325: 569–580
Scheuring S, Rigaud JL and Sturgis JN (2004) Variable LH2 stoichiometry and core clustering in native membranes of Rhodospirillum photometricum. EMBO J 23: 4127–4133
Scheuring S, Gonçalves RP, Prima V and Sturgis JN (2006) The photosynthetic apparatus of Rhodopseudomonas palustris: Structures and organization. J Mol Biol 358: 83–96
Simmons AE, Mackenzie RC and Cogdell RJ (1999) Cloning and sequencing of the pucBA genes from two strains of Rubrivivax gelatinosus. Photosynth Res 62: 99–106
Simmons AE, Barrett SJ, Hunter CN and Cogdell RJ (2000) Cloning, sequencing and analysis of the pucC genes from Rubrivivax gelatinosus strain 151 and Rhodopseudomonas acidophila strain 10050. Photosynth Res 65: 69–82
Stadtwald-Demchick R, Turner FR and Gest H (1990) Rhodopseudomonas cryptolactis, Sp-Nov, a new thermotolerant species of budding phototrophic purple bacteria. FEMS Microbiol Lett 71: 117–121
Stamouli A, Kafi S, Klein DC, Oosterkamp TH, Frenken JW, Cogdell RJ and Aartsma TJ (2003) The ring structure and organization of light harvesting 2 complexes in a reconstituted lipid bilayer, resolved by atomic force microscopy. Biophys J 84: 2483–2491
Steunou AS, Ouchane S, Reiss-Husson F and Astier C (2004) Involvement of the C-terminal extension of the a polypeptide and of the PucC protein in LH2 complex biosynthesis in Rubrivivax gelatinosus. J Bact 186: 3143–3152
Sundström V, Pullerits T and van Grondelle R (1999) Photosynthetic light-harvesting: Reconciling dynamics and structure of purple bacterial LH2 reveals function of photosynthetic unit. J Phys Chem B 103: 2327–2346
Tadros MH and Waterkamp K (1989) Multiple copies of the coding regions for the light-harvesting B800–850 alpha-polypeptide and beta-polypeptide are present in the Rhodopseudomonas palustris genome. EMBO J 8: 1303–1308
Tadros MH, Katsiou E, Hoon MA, Yurkova N and Ramji DP (1993) Cloning of a new antenna gene-cluster and expression analysis of the antenna gene family of Rhodopseudomonas palustris. Eur J Biochem 217: 867–875
Tharia HA, Nightingale TD, Papiz MZ and Lawless AM (1999) Characterisation of hydrophobic peptides by RP-HPLC from different spectral forms of LH2 isolated from Rps. palustris. Photosynth Res 61: 157–167
Thornber JP and Sokoloff MK (1970) Photochemical reactions of purple bacteria as revealed by studies of 3 spectrally different carotenobacteriochlorophyll-protein complexes isolated from Chromatium, Strain-D. Biochemistry 9: 2688–2698
Tichy HV, Albien KU, Gadon N and Drews G (1991) Analysis of the Rhodobacter capsulatus puc operon — the pucC gene plays a central role in the regulation of LH2 (B800–850 complex) expression. EMBO J 10: 2949–2955
van Grondelle R and Novoderezhkin V (2001) Dynamics of excitation energy transfer in the LH1 and LH2 light-harvesting complexes of photosynthetic bacteria. Biochemistry 40: 15057–15068
van Mourik F, Hawthornthwaite AM, Vonk C, Evans MB, Cogdell RJ, Sundström V and van Grondelle R (1992) Spectroscopic characterization of the low-light B800–850 light-harvesting complex of Rhodopseudomonas palustris, Strain 216. Biochim Biophys Acta 1140: 85–93
Vredenberg WJ and Duysens LNM (1963) Transfer of energy from bacteriochlorophyll to a reaction centre during bacterial photosynthesis. Nature 197: 355–357
Walz T, Jamieson SJ, Bowers CM, Bullough PA and Hunter CN (1998) Projection structures of three photosynthetic complexes from Rhodobacter sphaeroides: LH2 at 6 Å, LH1 and RC-LH1 at 25 Å. J Mol Biol 282: 833–45
Young CS, Reyes RC and Beatty JT (1998) Genetic complementation and kinetic analyses of Rhodobacter capsulatus ORF1696 mutants indicate that the ORF 1696 protein enhances assembly of the light-harvesting I complex. J Bact 180: 1759–1765
Young CY and Beatty JT (1998) Structural andfunctional analysis of the orf1696/PucC family of light-harvesting complex assembly proteins. In: Peschek GA, Loeffelhardt W and Schmetterer G (eds) The Phototrophic Prokaryotes. 113–126 Kluwer Academic Publishers/Plenum Press. New York
Zeng XH, Choudhary M and Kaplan S (2003) A second and unusual pucBA operon of Rhodobacter sphaeroides 2.4.1: genetics and function of the encoded polypeptides. J Bact 185: 6171–6184
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2009 Springer Science + Business Media B.V
About this chapter
Cite this chapter
Gabrielsen, M., Gardiner, A.T., Cogdell, R.J. (2009). Peripheral Complexes of Purple Bacteria. In: Hunter, C.N., Daldal, F., Thurnauer, M.C., Beatty, J.T. (eds) The Purple Phototrophic Bacteria. Advances in Photosynthesis and Respiration, vol 28. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-8815-5_8
Download citation
DOI: https://doi.org/10.1007/978-1-4020-8815-5_8
Publisher Name: Springer, Dordrecht
Print ISBN: 978-1-4020-8814-8
Online ISBN: 978-1-4020-8815-5
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)