Skip to main content

Identification of Photosynthesis-Related Genes in Rice Using FOX Hunting System

  • Conference paper
  • 109 Accesses

Abstract

Photosynthesis is one of the most important determinants of crop productivity. Although many studies have been conducted to improve yield, very little progress has been made. In this study, we used rice FOX (Full length cDNA over-expressing) lines that rice full-length cDNAs were over-expressed in Arabidopsis to identify novel photosynthesis-related genes of rice. We have used imaging of chlorophyll fluorescence to screen candidates. To confirm over-expression of transformed cDNAs cause the observed phenotype, we generated transformants overexpressing each cDNA, resulting that eight lines showed the same phenotype as original lines. Isolated candidates could be classified into four categories depending on chlorophyll fluorescence parameters. We analyzed gene expression profile of three candidate lines showing similar photosynthetic characteristics using DNA microarray. We found commonly regulated genes among three candidates, indicating that candidates have both shared and independent influences on gene expression.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   429.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   549.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   549.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Bosco CD, Lezhneva L, Biehl A, Leister D, Strotmann H, Wanner G, Meurer J (2004) Inactivation of the chloroplast ATP synthase γ subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J Biol Chem 279 (2):1060-1069.

    Article  Google Scholar 

  • Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296 (5565):92-100.

    Article  PubMed  CAS  Google Scholar 

  • Haldrup A, Lunde C, Scheller HV (2003) Arabidopsis thal-iana plants lacking the PSI-D subunit of photosystem I suffer severe photoinhibition, have unstable photosystem I complexes, and altered redox homeostasis in the chlo-roplast stroma. J Biol Chem 278 (35):33276-33283.

    Article  PubMed  CAS  Google Scholar 

  • Ichikawa T, Nakazawa M, Kawashima M, Iizumi H, Kuroda H, Kondou Y, Tsuhara Y, Suzuki K, Ishikawa A, Seki M, Fujita M, Motohashi R, Nagata N, Takagi T, Shinozaki K, Matsui M (2006) The FOX hunting system: An alternative gain-of-function gene hunting technique. Plant J 48:974-985.

    Article  PubMed  CAS  Google Scholar 

  • Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team, Foundation of Advancement of International Science Genome Sequencing & Analysis Group, RIKEN (2003) Collection, mapping, and anno-tation of over 28,000 cDNA clones from japonica rice. Science 301 (5631):376-379.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

John F. Allen Elisabeth Gantt John H. Golbeck Barry Osmond

Rights and permissions

Reprints and permissions

Copyright information

© 2008 Springer Science + Business Media, B.V.

About this paper

Cite this paper

Higuchi, M. et al. (2008). Identification of Photosynthesis-Related Genes in Rice Using FOX Hunting System. In: Allen, J.F., Gantt, E., Golbeck, J.H., Osmond, B. (eds) Photosynthesis. Energy from the Sun. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-6709-9_134

Download citation

Publish with us

Policies and ethics