Skip to main content

Validation of a QTL for resistance to ascochyta blight linked to resistance to fusarium wilt race 5 in chickpea (Cicer arietinum L.)

  • Full Research Paper
  • Chapter
  • First Online:
Ascochyta blights of grain legumes

Abstract

Ascochyta blight caused by Ascochyta rabiei and fusarium wilt caused by Fusarium oxysporum. f. sp. ciceris are the two most serious diseases of chickpea (Cicer arietinum). Quantitative trait loci (QTL) or genes for ascochyta blight resistance and a cluster of resistance genes for several fusarium wilt races (foc1, foc3, foc4 and foc5) located on LG2 of the chickpea map have been reported independently. In order to validate these results and study the linkage relationship between the loci that confer resistance to blight and wilt, an intraspecific chickpea recombinant inbred lines (RIL) population that segregates for resistance to both diseases was studied. A new LG2 was established using sequence tagged microsatellite sites (STMS) markers selected from other chickpea maps. Resistance to race 5 of F. oxysporum (foc5) was inherited as a single gene and mapped to LG2, flanked by the STMS markers TA110 (6.5 cM apart) and TA59 (8.9 cM apart). A QTL for resistance to ascochyta blight (QTLAR3) was also detected on LG2 using evaluation data obtained separately in two cropping seasons. This genomic region, where QTLAR3 is located, was highly saturated with STMS markers. STMS TA194 appeared tightly linked to QTLAR3 and was flanked by the STMS markers TR58 and TS82 (6.5 cM apart). The genetic distance between foc5 and QTLAR3 peak was around 24 cM including six markers within this interval. The markers linked to both loci could facilitate the pyramiding of resistance genes for both diseases through MAS.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

eBook
USD 16.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Bhatti, M. A. (1990). The effects of inoculum density and environmental factors on wilt and root rot of chickpea (Cicer arietinum L.). Ph.D. Dissertation, Department of Plant Pathology, Washington State University, Pullman, Washington, 132 pp.

    Google Scholar 

  • Chen, W., Coyne, C. J., Peever, T. L., & Muehlbauer, F. J. (2004). Characterization of chickpea differentials for pathogenicity assay of ascochyta blight and identification of chickpea accessions resistant to Didymella rabiei. Plant Pathology, 53, 759–769.

    Article  Google Scholar 

  • Cho, S., Chen, W., & Muehlbauer, F. J. (2004). Pathotype-specific genetic factors in chickpea (Cicer arietinum L.) for quantitative resistance to ascochyta blight. Theoretical and Applied Genetics, 109, 733–739.

    Article  PubMed  Google Scholar 

  • Churchill, G. A., & Doerge, R. W. (1994). Empirical threshold values for quantitative trait mapping. Genetics, 138, 963–971.

    PubMed  CAS  Google Scholar 

  • Cobos, M. J., Fernández, M. J., Rubio, J., Kharrat, M., Moreno, M. T., Gil, J., & Millán, T. (2005). A linkage map of chickpea (Cicer arietinum L.) based on populations from Kabuli ´ Desi crosses: location of genes for resistance to fusarium wilt race 0. Theoretical and Applied Genetics, 110, 1347–1353.

    Article  PubMed  CAS  Google Scholar 

  • Cobos, M. J., Rubio, J., Strange, R. N., Moreno, M. T., Gil, J., & Millán, T. (2006). A new QTL for Ascochyta blight resistance in an RIL population derived from an interspecific cross in chickpea. Euphytica, 149, 105–111.

    Article  Google Scholar 

  • Collard, B. C. Y., Ades, P. K., Pang, E. C. K., Brouwer, J. B., & Taylor, P. W. J. (2001). Prospecting for sources of resistance to ascochyta blight in wild Cicer species. Australasian Plant Pathology, 30, 271–276.

    Article  Google Scholar 

  • Collard, B. C. Y., Pang, E. C. K., Ades, P. K., & Taylor, P. W. J. (2003). Preliminary investigation of QTL associated with seedling resistance to ascochyta blight from Cicer echinospermum, a wild relative of chickpea. Theoretical and Applied Genetics, 107, 719–729.

    Article  PubMed  CAS  Google Scholar 

  • Dey, S. K., & Singh, G. (1993). Resistance to ascochyta blight in chickpea – Genetic basis. Euphytica, 68, 147–153.

    Article  Google Scholar 

  • Doligez, A., Adam-Blondon, A. F., Cipriani, G., Di Gaspero, G., Laucou Merdinoglu, V. D., Meredith, C. P., Riaz, S., Roux, C., & This, P. (2006). An integrated SSR map of grapevine based on five mapping populations. Theoretical and Applied Genetics, 113, 369–382.

    Article  PubMed  CAS  Google Scholar 

  • FAOSTAT data (2005). http://faostat.fao.org/faostat/collections? subset=agriculture. Last updated February 2005.

    Google Scholar 

  • Flandez-Galvez, H., Ades, P. K., Ford, R., Pang, E. C. K., & Taylor, P. W. J. (2003). QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 107, 1257–1265.

    Article  PubMed  CAS  Google Scholar 

  • Gil, J., Nadal, S., Luna, D., Moreno, M. T., & de Haro, A. (1996). Variability of some physico-chemical characters in Desi and Kabuli chickpea types. Journal of the Science of Food and Agriculture, 71, 179–184.

    Article  CAS  Google Scholar 

  • Iruela, M., Rubio, J., Barro, F., Cubero, J. I., Millán, T., & Gil, J. (2006). Detection of two quantitative trait loci for resistance to ascochyta blight in an intra-specific cross of chickpea (Cicer arietinum L.): development of SCAR markers associated with resistance. Theoretical and Applied Genetics, 112, 278–287.

    Article  PubMed  CAS  Google Scholar 

  • Jiménez-Díaz, R. M., Trapero-Casas, A., & Cabrera de la Colina, J. (1989). Races of Fusarium oxysporum f. sp. ciceris infecting chickpea in southern Spain. In E. C. Tjamos & C. H. Beckman (Eds.), Vascular Wilt Diseases of Plants. NATO ASI Series, Vol. H28 (pp. 515–520). Springer-Verlag: Berlin.

    Google Scholar 

  • Jiménez-Gasco, M. M., Navas-Cortés, J. A., & Jiménez-Díaz, R. M. (2004). The Fusarium oxysporum f. sp. ciceris/Cicer arietinum pathosystem: a case study of the evolution of plant-pathogenic fungi into races and pathotypes. International Microbiology, 7, 95–104.

    PubMed  Google Scholar 

  • Landa, B. B., Navas-Cortés, J. A., & Jiménez-Díaz, R. M. (2004). Integrated management of Fusarium wilt of chickpea with sowing date, host resistance, and biological control. Phytopathology, 94, 946–960.

    Article  PubMed  Google Scholar 

  • Mayer, M. S., Tullu, A., Simon, C. J., Kumar, J., Kaise, W. J., Kraft, J. M., & Muehlbauer, F. J. (1997). Development of a DNA marker for fusarium wilt resistance in chickpea. Crop Science, 37, 1625–1629.

    Article  CAS  Google Scholar 

  • Meyers, B. C., Kozik, A., Griego, A., Kuang, H. H., & Michelmore, R. W. (2003). Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell, 15, 809–834.

    Article  PubMed  CAS  Google Scholar 

  • Miklas, P. N., Kelly, J. D., Beebe, S. E., & Blair, M. W. (2006). Common bean breeding for resistance against biotic and abiotic stresses: from classical to MAS breeding. Euphytica, 147, 105–131.

    Article  CAS  Google Scholar 

  • Millán, T., Rubio, J., Iruela, M., Daly, K., Cubero, J. I., & Gil, J. (2003). Markers associated with Ascochyta blight resistance in chickpea an their potential in marker-assisted selection. Field Crops Research, 84, 373–384.

    Article  Google Scholar 

  • Muehlbauer, F. J., & Kaiser, W. J. (1994). Using host plant resistance to manage biotic stresses in cool season grain legumes. Euphytica, 73, 1–10.

    Article  Google Scholar 

  • Polzin, K. M., Lohnes, D. G., Nickell, C. D., & Shoemaker, R. C. (1994). Integration of Rps2, Rmd, and Rj2 into linkage group J of the soybean molecular map. Journal of Heredity, 85, 300–303.

    CAS  Google Scholar 

  • Rakshit, S., Winter, P., Tekeoglu, M., Juarez Muñoz, J., Pfaff, T., Benko-Iseppon, A. M., Muehlbauer, F. J., & Kahl, G. (2003). DAF marker tightly linked to a major locus for Ascochyta blight resistance in chickpea (Cicer arietinum L.). Euphytica, 132, 23–30.

    Article  CAS  Google Scholar 

  • Ratnaparkhe, M. B., Santra, D. K., Tullu, A., & Muehlbauer, F. J. (1998a) Inheritance of inter-simple-sequence-repeat polymorphisms and linkage with a fusarium wilt resistance gene in chickpea. Theoretical and Applied Genetics, 96, 348–353.

    Article  CAS  Google Scholar 

  • Ratnaparkhe, M. B., Tekeoglu, M., & Muehlbauer, F. J. (1998b). Intersimple-sequence-repeat (ISSR) polymorphisms are useful for finding markers associated with disease resistance gene clusters. Theoretical and Applied Genetics, 97, 515–519.

    Article  CAS  Google Scholar 

  • Rubio, J., Moussa, E., Kharrat, M., Moreno, M. T., Millán, T., & Gil, J. (2003). Two genes and linked RAPD markers involved in resistance to Fusarium oxysporum f. sp. ciceris race 0 in chickpea. Plant Breeding, 122, 188–191.

    Article  CAS  Google Scholar 

  • Santra, D. K., Tekeoglu, M., Ratnaparkhe, M., Kaiser, W. J., & Muehlbauer, F. J. (2000). Identification and mapping of QTLs conferring resistance to ascochyta blight in chickpea. Crop Science, 40, 1606–1612.

    Article  CAS  Google Scholar 

  • Sharma, K. D., Winter, P., Kahl, G., & Muehlbauer, F. J. (2004). Molecular mapping of Fusarium oxysporum f. sp. ciceris race 3 resistance gene in chickpea. Theoretical and Applied Genetics, 108, 1243–1248.

    Article  PubMed  CAS  Google Scholar 

  • Sharma, K. D., Chen, W., & Muehlbauer, F. J. (2005). Genetics of chickpea resistance to five races of Fusarium wilt and a concise set of race differentials for Fusarium oxysporum f. sp. ciceris. Plant Disease, 89, 385–390.

    Article  Google Scholar 

  • Singh, K. B., & Reddy, M. V. (1983). Inheritance of resistance to ascochyta blight in chickpea. Crop Science, 23, 9–10.

    Article  Google Scholar 

  • Singh, K. B., & Reddy, M. V. (1993). Resistance to six races of Ascochyta rabiei in the world germplasm collection of chickpea. Crop Science, 33, 186–189.

    Article  Google Scholar 

  • Song, Q. J., Marek, L. F., Shoemaker, R. C., Lark, K. G., Concibido, V. C., Delannay, X., Specht, J. E., & Cregan, P. B. (2004). A new integrated genetic linkage map of the soybean. Theoretical and Applied Genetics, 109, 122–128.

    Article  PubMed  CAS  Google Scholar 

  • Takken, F. L. W., & Joosten, M. H. A. J. (2000). Plant resistance genes: their structure, function and evolution. European Journal of Plant Pathology, 106, 699–713.

    Article  CAS  Google Scholar 

  • Tekeoglu, M., Santra, D. K., Kaiser, W. J., & Muehlbauer, F. J. (2000). Ascochyta blight resistance inheritance in three chickpea recombinant inbred line populations. Crop Science, 40, 1251–1256.

    Article  Google Scholar 

  • Tekeoglu, M., Rajesh, P. N., & Muehlbauer, F. J. (2002). Integration of sequence tagged microsatellite sites to the chickpea genetic map. Theoretical and Applied Genetics, 105, 847–854.

    Article  PubMed  CAS  Google Scholar 

  • Tewari, S. K., & Pandey, M. P. (1986). Genetics of resistance to ascochyta blight in chickpea (Cicer arietinum L.). Euphytica, 35, 211–215.

    Article  Google Scholar 

  • Tullu, A, Muehlbauer, F. J., Simon, C. J., Mayer, M. S., Kumar, J, Kaiser, W. J., & Kraft, J. M., (1998). Inheritance and linkage of a gene for resistance to race 4 of fusarium wilt and RAPD markers in chickpea. Euphytica, 102, 227–232.

    Article  CAS  Google Scholar 

  • Udupa, S. M., & Baum, M (2003). Genetic dissection of pathotype-specific resistance to ascochyta blight disease in chickpea (Cicer arietinum L.) using microsatellite markers. Theoretical and Applied Genetics, 106, 1196–1202.

    PubMed  CAS  Google Scholar 

  • Van Ooijen J. W. (2004). MAPQIL ® 5, Software for the mapping of quantitative trait loci in experimental populations. Wageningen, the Netherlands: Plant Research International.

    Google Scholar 

  • Van Ooijen J. W., & Voorrips R. E. (2001). Joinmap® 3.0, Software for the calculation of genetic maps. Wageningen, the Netherlands: Plant Research International.

    Google Scholar 

  • Williams, P. C., & Singh, U. (1987). The Chickpea–Nutritional quality and the evaluation of quality. In M. C. Saxena & K. B. Singh (Eds.), The Chickpea (pp. 329–356). Wallingford, UK: CAB International.

    Google Scholar 

  • Winter, P., Pfaff, T., Udupa, S. M., Hüttel, B., Sharma, P. C., Sahi, S., Arreguin-Espinoza, R., Weigand, F., Muehlbauer, F. J., & Kahl, G. (1999). Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome. Molecular & General Genetics, 262, 90–101.

    Article  CAS  Google Scholar 

  • Winter, P., Benko-Iseppon, A. M., Hüttel, B., Ratnaparkhe, M., Tullu, A., Sonnante, G., Pfaff, T., Tekeoglu, M., Santra, D., Sant, V. J., Rajesh, P. N., Kahl, G., & Muehlbauer, F. J. (2000). A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum ´ C. reticulatum cross: localization of resistance gene for fusarium wilt races 4 and 5. Theoretical and Applied Genetics, 101, 1155–1163.

    Article  CAS  Google Scholar 

  • Winter, P., Staginnus, C., Sharma, P. C., & Kahl, G. (2003). Organisation and genetic mapping of the chickpea genome. In P. K. Jaiwal, & R. P. Singh (Eds.), Improvement strategies for leguminosae biotechnology (pp. 303–351). The Netherlands: Kluwer Academic Publishers, Dordrecht.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to J. Gil .

Editor information

Bernard Tivoli Alain Baranger Fred J. Muehlbauer B. M. Cooke

Rights and permissions

Reprints and permissions

Copyright information

© 2007 KNPV

About this chapter

Cite this chapter

Iruela, M. et al. (2007). Validation of a QTL for resistance to ascochyta blight linked to resistance to fusarium wilt race 5 in chickpea (Cicer arietinum L.). In: Tivoli, B., Baranger, A., Muehlbauer, F.J., Cooke, B.M. (eds) Ascochyta blights of grain legumes. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-6065-6_4

Download citation

Publish with us

Policies and ethics