This is a preview of subscription content, log in via an institution to check access.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Ausloos, P., Clifton, C.L., Lias, S.G., Mikaya, A.I., Stein, S.E., Tchekhovskoi, D.V., Sparkman, O.D., Zaikin, V., and Zhu, D., 1999, The critical evaluation of a comprehensive mass spectral library, J. Am. Soc. Mass Spectrom. 10: 287-299.
Bieleski, R.L., 1964, Problem of halting enzyme action when extracting plant tissues, Anal. Biochem. 9:431-442.
Birkemeyer, C., Kolasa, A., and Kopka, J., 2003, Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones, J. Chromatogr. A 993:89-102.
Birkemeyer, C., Luedemann, A., Wagner, C., Erban, A., and Kopka, J., 2005, Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling, Trends Biotechnol. 23:28-33.
Colebatch, G., Desbrosses, G., Ott, T., Krusell, L., Kloska, S., Kopka, J., and Udvardi, M.K., 2004, Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus, Plant J. 39:487-512.
Fiehn, O., Kopka, J., Trethewey, R.N., and Willmitzer, L., 2000a, Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry, Anal. Chem. 72:3573-3580.
Fiehn, O., Kopka, J., Dörmann, P., Altmann, T., Trethewey, R.N., and Willmitzer, L., 2000b, Metabolite profiling for plant functional genomics, Nat. Biotechnol. 18:1157-1161.
Gullberg, J., Jonsson, P., Nordstrom, A., Sjostrom, M., and Moritz, T., 2004, Design of experiments: an efficient strategy to identify factors influencing extraction and derivatization of Arabidopsis thaliana samples in metabolomic studies with gas chromatography/mass spectrometry, Anal. Biochem. 331:283-295.
Harada, K., Fukusaki, E., Bamba, T., and Kobayashi, A. 2004, In-vivo 15N-enrichment of metabolites in Arabidopsis cultured cell T87 and its application for metabolomics, Third international congress on plant metabolomics, #23.
Kopka, J., Fernie, A.F., Weckwerth, W., Gibon, Y., and Stitt, M., 2004, Metabolite profiling in Plant Biology: Platforms and Destinations, Genome Biol. 5 (6):109-117.
Kopka, J., Schauer, N., Krueger, S., Birkemeyer, C., Usadel, B., Bergmüller, E., Dörmann, P., Gibon, Y., Stitt, M., Willmitzer, L., Fernie, A.R., and Steinhauser, D., 2005, GMD@CSB.DB: The Golm Metabolome Database, Bioinformatics (doi:10.1093/bioinfor-matics/bti236).
Mashego, M.R., Wu, L., Van Dam, J.C., Ras, C., Vinke, J.L., Van Winden, W.A., Van Gulik, W.M., Heijnen, J.J., 2004, MIRACLE: mass isotopomer ratio analysis of U-13C-labeled extracts. A new method for accurate quantification of changes in concentrations of intracellular metabolites, Biotech. Bioeng. 85:620-628.
Roessner, U., Wagner, C., Kopka, J., Trethewey, R.N., and Willmitzer, L., 2000, Technical advance: simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry, Plant J. 23:131-142.
Roessner, U., Luedemann, A., Brust, D., Fiehn, O., Linke, T., Willmitzer, L., and Fernie, A.R., 2001, Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems, Plant Cell 13:11-29.
Roessner-Tunali, U., Hegemann, B., Lytovchenko, A., Carrari, F., Bruedigam, C., Granot, D., and Fernie, A.R., 2003, Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development, Plant Physiol. 133:84-99.
Schauer, N., Steinhauser, D., Strelkov, S., Schomburg, D., Allison, G., Moritz, T., Lundgren, K., Roessner-Tunali, U., Forbes, M.G., Willmitzer, L., Fernie, A.R., and Kopka, J., 2005, GC-MS libraries for the rapid identification of metabolites in complex biological samples, FEBS Letters (in press).
Stein, S.E., 1999, An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data, J. Am. Soc. Mass Spectrom. 10:770-781.
Sumner, L.W., Mendes, P., and Dixon, R.A., 2003, Plant metabolomics: large-scale phytochemistry in the functional genomics era, Phytochemistry 62:817-836.
Wagner, C., Sefkow, M., and Kopka, J., 2003, Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles, Phytochemistry 62:887-900.
Weckwerth, W., Tolstikov, V., and Fiehn, O., 2001, Proceedings of the 49th ASMS Confe-rence on Mass Spectrometry and Allied Topics, ASMS, Chicago, pp. 1-2.
Weckwerth, W., Wenzel, K., and Fiehn, O., 2004, Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks, Proteomics 4:78-83.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2007 Springer
About this paper
Cite this paper
Birkemeyer, C., Kopka, J. (2007). Design of Metabolite Recovery by Variations of the Metabolite Profiling Protocol. In: Nikolau, B.J., Wurtele, E.S. (eds) Concepts in Plant Metabolomics. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-5608-6_4
Download citation
DOI: https://doi.org/10.1007/978-1-4020-5608-6_4
Publisher Name: Springer, Dordrecht
Print ISBN: 978-1-4020-5607-9
Online ISBN: 978-1-4020-5608-6
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)