Abstract
The geologic record suggests the presence of microbes on Earth as early as the Precambrian (Hall-Stoodley et al., 2004). Microbes are involved in practically every aspect of earth evolution. The term microbe is a general descriptor for tiny organisms that individually are too small to be seen with the unaided eye. Microbes may include bacteria, archaea, fungi, and protists. Viruses are also included as a major type of microbe, although there is some debate whether viruses can be classified as living organisms. The role microbes play in altering environmental systems is well documented in many biogeochemical studies. Notable is the role of microbes in water-rock interactions (Chapelle and Bradley, 1997). Field observations and laboratory experiments suggest that bacteria can accelerate silicate weathering either by direct contact with minerals or by producing organic and inorganic acids that enhance the dissolution of silicates (Heibert and Bennett, 1992). Thus, microbes are able to directly alter mineral surface chemistry and pore water chemistry over short to geologic time scales. Microbial induced changes in water-rock-regolith environments over variable time scales cause changes in the physical properties of these environments that may be detected and measured using geophysical methodologies.
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References
Abdel Aal, G.Z., E.A. Atekwana, L.D. Slater, and E.A. Atekwana, 2004. Effects of microbial processes on electrolytic and interfacial electrical properties of unconsolidated sediments, Geophys. Res. Lett., 31 (12), L12505, doi: 10.1029/2004GL020030.
Abdel Aal, G.Z., L.D. Slater, and E.A. Atekwana, 2006. Induced-polarization measurements on unconsolidated sediments from a site of active hydrocarbon biodegradation, Geophys., 71, H13–H24, doi: 10.1190/1.2187760.
Aggarwal, P.K., and R.E. Hinchee, 1991. Monitoring in situ biodegradation of hydrocarbons by using carbon isotopes, Environ. Sci. Technol., 25, 1178–1180.
Atekwana, E., E.A. Atekwana, R.S. Rowe, D.D. Werkema, Jr., and F.D. Legall, 2004a. The relationship of total dissolved solids measurements to the bulk electrical conductivity in an aquifer contaminated with hydrocarbon, J. Appl. Geophys., 56, 281–294.
Atekwana, E.A., E.A. Atekwana, D.D. Werkema, J.P. Allen, L.A. Smart, J.W. Duris, D.P. Cassidy, W.A. Sauck, and S. Rossbach, 2004b. Evidence for microbial enhanced electrical conductivity in hydrocarbon-contaminated sediments, Geophys. Res. Lett., 31, L2350.
Atekwana, E.A., W.A. Sauck, G.Z. Abdel Aal, and D.D. Werkema, Jr., 2002. Geophysical investigation of vadose zone conductivity anomalies at a hydrocarbon contaminated site: Implications for the assessment of intrinsic bioremediation, J. Environ. Eng. Geophys., 7 (3), 102–110.
Atekwana, E.A., W.A. Sauck, and D.D. Werkema, Jr., 2000. Investigations of geoelectrical signatures at a hydrocarbon contaminated site, J. Appl. Geophys., 44, 167–180.
Atekwana, E.A., D.D. Werkema, Jr., J.D. Duris , S. Rossbach , E.A. Atekwana, W.A. Sauck, D.P. Cassidy, J. Means, and F.D. Legall, 2004c. In situ apparent resistivity measurements and microbial population distribution at a hydrocarbon contaminated site: Implications for assessing natural attenuation, Geophysics, 69 (1), 56–63.
Balkwill, D.L., and D.R. Boone, 1997. Identity and diversity of microorganisms cultured from subsurface environments, in The Microbiology of the Terrestrial Deep Surface, edited by P.S. Amy and D.L. Haldeman, CRC, Boca Raton, FL, pp. 105–117.
Bekins, B., B.E. Rittmann, and J.A. Macdonald, 2001. Natural attenuation strategy for groundwater cleanup focuses on demonstrating cause and effect, Eos, Trans, Am. Geophys. Union, 82 (5), 53–58.
Bennett, P.C., F.K. Hiebert, and W. Joo Choi, 1996. Microbial colonization and weathering of silicates in a petroleum-contaminated groundwater, Chem. Geol., 132, 45–53.
Bermejo, J.L., W.A. Sauck, and E.A. Atekwana, 1997. Geophysical discovery of a new lnapl plume at the former Wurtsmith Afb, Oscoda, Michigan, Ground Water Monit. Rem., 17 (4), 131–137.
Bollinger, C., P. Hohener, D. Hunkeler, K. Haberli, and J. Zeyer, 1999. Intrinsic bioremediation of a petroleum hydrocarbon-contaminated aquifer and assessment of mineralization based on stable carbon isotopes, Biodegradation, 10 (201), 217.
Bouwer, E.J., H.H.M. Rijnaarts, A.B. Cunningham, and R. Gerlach, 2000. Biofilms in porous media, in Biofilms Ii: Process Analysis And Applications, edited by J.D. Bryers, Wiley-Liss, pp. 123–158.
Bradford, J.H., 2003. GPR offset dependent reflectivity analysis for characterization of a high-conductivity lnapl plume, in Proceedings of the Symposium on the Application of Geophysics to Engineering and Environmental Problems (Sageep ’03), April 6–10, San Antonio, TX, pp. 238–252.
Bryar, T.R., and R. Knight, 2002. Sensitivity of nuclear magnetic relaxation measurements to changing soil redox conditions. Geophys. Res. Lett. 29, 2197.
Burton, M., E.A. Atekwana, and E. Atekwana, 2003. Mineral grain surface observations at hydrocarbon-contaminated aquifer: Implications for the electrical properties of soils, in Proceedings of the Symposium on the Application of Geophysics to Engineering and Environmental Problems (Sageep’03), April 6–10, San Antonio, TX., pp. 271–280.
Cassidy, D.P., D.D. Werkema, W.A. Sauck, E.A. Atekwana, S. Rossbach, and J. Duris, 2001. The effects of LNAPL biodegradation products on electrical conductivity measurements, J. Environ. Eng. Geophys., 6, 47–52.
Chapelle, F.H., and P.M. Bradley, 1997. Alteration of aquifer geochemistry by microorganisms, in Hurst, 56Hurst, C.J., G.R. Knudsen, M.J. McInerney, L.D. Stetzenbach, and M.V. Walter (eds.), Manual of Environmental Microbiology, American Society for Microbiology, pp. 558–564. ASM Press, Washington, D.C.
Cozzarelli, I.M., B.A. Bekins, M.J. Baedecker, G.R. Aiken, R.P. Eganhouse, and M.E. Tuccillo, 2001. Progression of natural attenuation processes at a crude oil spill site: I. Geochemical evolution of the plume, J. Contam. Hydrogeol., 53, 369–385.
Dojka, M.A., P. Hugenholtz, S.K. Haack, and P. Norman, 1998. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation, Appl. Environ. Microbiol., 3869–3877.
Dunsmore, B.C., C.J Bass., and Lappin-ScottH.M., 2004. A novel approach to investigate biofilm accumulation and bacterial transport in porous matricies, Environ. Microbiol., 6 (2), 183–187.
Duris, J.W., 2002. Microbial communicty structure in hydrocarbon impacted sediment associated with anomalous geophysical signatures, M.S.Thesis, Western Michigan University, Kalamazoo, MI, 1–72.
Gammack, S.M., E. Paterson, J. Kemp, M.S. Cresser, and K. Killham, 1992. Factors affecting the movement of microorganisms in soils, in Soil Biochemistry, edited by G. Stotzky and J.M. Bollag, Vol. 7, Marcel Dekker, New York, pp. 304–418.
Goodman, A.E., and K.C. Marshall, 1995. Genetic responses of bacteria at surfaces, in Microbial Biofilms, edited by H.M. Lappin-Scott and J.W. Costerton, Cambridge University Press, Cambridge, UK, pp. 80–98.
Hall-Stoodley, L., W.J. Costerton, and P. Stoodley, 2004. Bacterial biofilms: From the natural environment to infectious diseases, Nat. Rev./Microbiol., 2, 95–108, doi: 10.1038/nrmicro821.
Heibert, F.K., and P.C. Bennett, 1992. Microbial control of silicate weathering in organic-rich ground water, Science, 258, 278–281.
Legall, F.D., 2002. Geochemical and isotopic characteristics associated with high conductivities in a shallow hydrocarbon-contaminated aquifer, Ph.D. Dissertation, Western Michigan University, Kalamazoo, MI, 1–85.
Lesmes, D.P., and K.M. Frye, 2001. Influence of pore fluid chemistry on the complex conductivity and induced polarization responses of Berea Sandstone, J. Geophys. Res., 106 (B3), 4079–4090.
Lovely, D.R., 1990. Magnetite Formation During Microbial Dissimilatory Iron Reduction, Iron Biominerals, edited by R.B. Frankel and R.P. Blakemore, Plenum, New York, pp. 151–166.
Maier, R.M., I.L. Pepper, and C.P. Gerba, 2000. Environmental Microbiology, Academic , San Diego, CA, pp. 156–157.
Mann, S., J. Webb, and R.J.P. Williams (eds), 1989. Biomineralization: Chemical and Biochemical Perspectives, VCH, New York, pp. 1–385.
Marshall, K.C., 1976. Interfaces in Microbiol Ecology, Harvard University Press, Cambridge, Mass, pp. 44–47.
Marshall, K.C., 1985. Mechanisms of bacterial adhesion at solid–water interfaces, in Bacterial Adhesion, edited by D.C. Savage and M. Fletcher, Plenum, New York, pp. 133–161.
Marshall, K.C., 1992. Biofilms: An overview of bacterial adhesion, activity, and control at surfaces, Am. Soc. Microbiol. News, 58, 202–207.
Mcmahon, P.B., D.A. Vroblesky, P.M. Bradely, F.H. Chapelle, and C.D. Gullet, 1995. Evidence for enhanced mineral dissolution in organic acid-rich shallow ground water, Ground Water, 33 (2), 207–216.
Moskowitz, B.M., R.B. Frankel, and D.A. Bazylinski, 1993. Rock magnetic criteria for the detection of biogenic magnetite, Earth Planet. Sci. Lett., 120, 283–300.
Naudet, V., A. Revil, J.Y. Bottero, and P. Begassat, 2003. Relationship between self-potential (sp) signals and redox conditions in contaminated groundwater, Geophys. Res. Lett., 30 (21), 2091.
Naudet, V., and A. Revil, 2005. A sandbox experiment to investigate bacteria-mediated redox processes on self-potential signals, Geophys. Res. Lett., 32, doi: 10.1029/2005gl022735.
Newby, D.T., I.L. Pepper, and R.M. Maier, 2000. Microbial Transport in Environmental Microbiology, edited by R.M. Maier, I.L. Pepper, and C.P. Gerba, Academic, New York, 585 p.
Ntarlagiannis, D., K.H. Williams, L.D. Slater, and S.S. Hubbard, 2005a. Low frequency electrical response to microbial induced sulfide precipitation, J. Geophys. Res., 110, G02009, doi: 10.1029/2005JG000024.
Ntarlagiannis, D., N. Yee, L. Slater, and E.A. Atekwana, 2005b. Electrical measurements on microbial cells in suspension and in sand columns, Eos Trans. AGU, 86 (18), Jt. Assem. Suppl., May 23–27, Abstract Ns51b-06.
Nyquist, J.E., and C.E. Corry, 2002. Self-potential: The ugly duckling of environmental geophysics, The Leading Edge, 21, 446–451.
Park, D.H., and J.G. Zeikus, 2000. Electricity generation in microbial fuel cells using neutral red as an electronophore, Appl. Environ. Microbiol., 66 (4), 1292–1297.
Prodan, C., F. Mayo, J.R. Claycomb, J.H. Miller, and M.J. Benedik, 2004. Low frequency, low-field dielectric spectroscopy of living cell suspensions, J. Appl. Phys. 95 (7), 3754–3756.
Redman, J.A., S. Walker, and M. Elimelech, 2004. Bacterial adhesion and transport in porous media: Role of the secondary energy minimum, Environ. Sci. Technol., 38, 1777–1785.
Robert, M., and C. Chenu, 1992. Interactions between soil minerals and microorganisms, in Soil Biochemistry, edited by G. Stotzky and J.M. Bollag, Vol. 7, Marcel Dekker, New York, pp. 307–418.
Sauck, W.A., E.A. Atekwana, and M.S. Nash, 1998. High conductivities associated with an lnapl plume imaged by integrated geophysical techniques, J. Environ. Eng. Geophys., 2 (3), 203–212.
Sauck, W.A., 2000. A conceptual model for the geoelectrical response of LNAPL plumes in granular sediments. J. Appl. Geophys., 44, 151–165.
Shevnin, V., A. Mousatov, E. Nakamura-Labastida, O. Elgado-Rodriquez, J. Sanche-Osi, and H. Sanchez-Osio, 2003. Study of oil pollution in airports with resistivity sounding, in Proceedings of the Symposium on the Application of Geophysics to Engineering and Environmental Problems (Sageep 2003), San Antonio, TX., Paper Con02, pp. 180–189.
Stoodley, P., R. Cargo, C.J. Rupp, S. Wilson, and I. Klapper, 2002. Biofilm mechanics and shear-induced deformation and detachment. J. Ind. Microbiol. Biotechnol. 29, 361–368.
Stumm, W., and J.J. Morgan, 1995. Aquatic Chemistry: Chemical Equilibria and Rates in Natrual Waters, 3rd edition. New York: John Wiley and Sons.
Turco, R.F., and M. Sadowsky, 1995. The microfloral of bioremediation, in Bioremediation: Science and Applications, edited by H.D. Skipper and R.F. Turco, Special Publication No. 43, Soil Science Society of America, Madison, WI., pp. 87–102.
Van Der Wal, A., M. Minor, W. Norde, A.J.B. Zehnder, and J. Lyklema, 1997a. Conductivity and dielectric dispersion of gram-positive bacterial cells, J. Colloidal Interfacial Sci., 186, 71–79.
Van Der Wal, A., M. Minor, W. Norde, A.J.B. Zehnder, and J. Lylkema, 1997b. Electrokinetic potential of bacterial cells, Langmuir, 13, 165–271.
Van Loosdrecht, M.C.M., J. Lyklema, A.J. Norde, and B. Zehnder, 1990. Influence of interfaces on microbial activity, Microbiol. Rev., 54, 75–87.
Werkema, D.D., E.A. Atekwana, A.L. Endres, W.A. Sauck, and D.P. Cassidy, 2003. Investigating the geoelectrical response of hydrocarbon contamination undergoing biodegradation, Geophys. Res. Lett., 30 (12), 1647.
Williams, K H., D. Ntarlagiannis, L.D. Slater, P. Long, A. Dohnalkova, S.S. Hubbard, and J.F. Banfield, 2004. Remote sensing of subsurface microbial transformations, Eos Trans., AGU, Abstract B51f-01.
Williams, K.H., D. Ntarlagiannis, L.D. Slater, A. Dohnalkova, S.S. Hubbard, and J.F. Banfield, 2005. Geophysical imaging of stimulated microbial mineralization, Environ. Sci. Technol., 39, 7592–7600.
Wolfaardt, G.M., J.R. Lawrence, R.D. Robarts, S.J. Caldwell, and D.E. Caldwell, 1994. Multicellular organization in a degradative biofilm community, Appl. Environ. Microbiol., 60, 434–446.
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Atekwana, E.A., Werkema, D.D., Atekwana, E.A. (2006). BIOGEOPHYSICS: THE EFFECTS OF MICROBIAL PROCESSES ON GEOPHYSICAL PROPERTIES OF THE SHALLOW SUBSURFACE. In: Vereecken, H., Binley, A., Cassiani, G., Revil, A., Titov, K. (eds) Applied Hydrogeophysics. NATO Science Series, vol 71. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-4912-5_6
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