Abstract
Studies that focus on biological rhythms, like those in other areas of biology, include the formulation and testing of hypotheses, as well as the statistical analysis of data representing results obtained from experiments and observations. Procedures by which results from studies of biological rhythms are analyzed range from the visual estimation of period, phase and amplitude, to the use of complex computer-assisted statistical programs based upon mathematical models.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Alberola C, Revilla M, Mazariegos R. (1999) Web-base chronobiological analysis. Biol Rhythm Res 30(5): 477–496.
Arendt J. (1989) Melatonin and the pineal gland. In: Biological Rhythms in Clinical Practice. Arendt J, Minors DS, Waterhouse JM, eds. London: Wright, pp. 184–206.
Bingham C. (1978) Time series. In: International Encyclopedia of Statistics,Vol 2. Kruskal WH, Tanur JM, eds. New York: the Free Press, pp. 1167–1189.
Bingham C, Arbogast B, Cornélissen-Guillaume G, Lee JK, Halberg F. (1982) Inferential statistical methods for estimating and comparing cosinor parameters. Chronobiologia 9: 397–439.
Bourdon L, Buguet A, Cucherat M, Radomski MW. (1995) Use of a spreadsheet program for circadian analysis of biological/physiological data. Aviat Space Environ Med 66(8): 787–791.
Cornélissen G, Bakken E, Delmore P, Orth-Gomér, Åkerstedt T, Carandente O, Carandente F, Halberg F. (1990) From various kinds of heart rate variability to chronocardiology. Amer J Cardiol 66: 863–867.
DePrins J, Cornélissen G, Malbecq W. (1986) Statistical procedures in chronobiology and chronopharmacology. In: Annual Review of Chronopharmacology. Vol 2. Reinberg A, Smolensky M, Labrecque G, eds. New York: Pergamon Press, pp. 27–141.
DePrins J, Hecquet B. (1994) Data processing in chronobiological series. In: Biologic Rhythms in Clinical and Laboratory Medicine, Touitou Y, Haus E, eds. Berlin: Springer-Verlag, pp. 90–113.
Dörrscheidt GJ, Beck L. (1975) Advanced methods for evaluating characteristics parameters (τ, α, φ) of circadian rhythms. J Math Biol 2: 107–121.
Domoslawksi J, Zajac W, Lewandowski MH, Hess G. (1991) Chronos-experimental data processing package for chronobiology. J Interdiscipl Cycle Res 22(2): 108–109.
Enright JTE. (1981) Data analysis. In: Biological Rhythms. Handbook of Behavioral Neurobiology, Vol 4. Aschoff J, ed. New York: Plenum Press, pp. 21–39.
Enright JT. (1989) The parallactic view, statistical testing and circular reasoning. J Biol Rhythms 4(2): 295–304.
Faure A, Nemoz C, Claustrat B. (1990) A graphical and statistical technique for investigation of time series in chronobiology according to cosinor procedure. Comput Biol Med 20: 319–329.
Fernández JR, Hermida RC. (1998) Inferential statistical method for analysis of nonsinusoidal hybrid time series with unequidistant observations. Chronobiol Intl 15(2): 191–204.
Fernández JR, Mojón A, Hermida RC. (2004) Comparison of parameters from rhythmometric models with multiple components on hybrid data. Chronobiol Intl 21(3): 469–484.
Fueuntes-Arderiu X, Rivera-Coll A. (1993) Impact of circadian rhythms on the interpretation of stat measurements. Clin Chim Acta 214: 113–118.
Halberg F, Tong YL, Johnson EA. (1967) Circadian system phase-an aspect of temporal morphology; procedures and illustrative examples. In: The Cellular Aspects of Biorhythms. von Mayersbach H, ed. Berlin: Springer-Verlag, pp. 20–48.
Halberg F, Johnson EA, Nelson W, Runge W, Sothern RB. (1972) Autorhythmometry-procedures for physiologic self-measurement and their analysis. The Physiology Teacher 1: 1–11.
Hassnaoui M, Pupier R, Attia J, Blanc M, Beauchaud M, Buisson B. (1998) Some tools to analyze changes of rhythms in biological time series. Biol Rhythm Res 29(4): 353–366.
Klemfuss H, Clopton PL. (1994) Seeking Tau: a comparison of six methods. J Interdiscipl Cycle Res 24(1): 1–16.
Koukkari WL, Parks TW, Sothern RB. (1999) Individual circadian rhythms in filtering behavior of Trichoptera during synchronized and constant lighting conditions (abstract). NABS 16(1): 218.
Lewy AJ, Sack RL. (1989) The dim light melatonin onset (DLMO) as a marker for circadian phase position. Chronobiol Intl 6: 93–102.
Lewy AJ, Cutler NL, Sack RL. (1999) The endogenous melatonin profile as a marker for circadian phase position. J Biol Rhythms 14(3): 227–236.
Mattes A, Witte K, Hohmann W, Lemmer B. (1991) Pharmfit-a nonlinear fitting program for pharmacology. Chronobiol Intl 8: 460–476.
Mikulecky M. (1991) Enright’s criticism of cosinor analysis: the solution? J Interdiscipl Cycle Res 22(2): 157.
Minors DS, Waterhouse JM. (1989) Analysis of biological times series. In: Biological Rhythms in Clinical Practice. Arendt J, Minors DS, Waterhouse JM, eds. London: Butterworth & Co., pp. 272–293.
Mojón A, Fernández JR, Hermida R. (1992) Chronolab: an interactive software package for chronobiologic time series analysis written for the Macintosh computer. Chronobiol Intl 9: 403–412.
Monk TH, Fort A. (1984) “Cosina”: a cosine curve fitting program suitable for small computers. Intl J Chronobiol 8: 193–224.
Morgan E, Minors DS, eds. (1995) Special Issue: methods in biological time-series analysis. Biol Rhythm Res 26: 124–252.
Nelson W, Tong YL, Lee JK, Halberg F. (1979) Methods for cosinor rhythmometry. Chronobiologia 6: 305–323.
Plautz JD, Straume M, Stanewsky R, Jamison CF, Brandes C, Dowse HB, Hall JC, Kay SA. (1997) Quantitative analysis of Drosophila period gene transcription in living animals. J Biol Rhythms 12(3): 204–217. (Erratum in: J Biol Rhythms 1999; 14(1): 77.)
Refinetti R. (1993) Laboratory instrumentation and computing: comparison of six methods for the determination of the period of circadian rhythms. Physiol Behav 54(5): 869–875.
Refinetti R. (2000) Circadian Physiology. Boca Raton: CRC Press, 184 pp. (Note: programs for analyses for time-effects are also available for PCs from this author at: http://www.circadian.org/softwar.html).
Reinberg A, Smolensky MH. (1983) Investigative methodology for chronobiology. In: Biological Rhythms and Medicine. Cellular, Metabolic, Physiopathologic and Pharmacologic Aspects. Reinberg A, Smolensky MH, eds. New York: Springer-Verlag, pp. 23–46.
Sokolove PG, Bushell WN. (1978) The chi-square periodogram: its utility for analysis of circadian rhythms. J Theor Biol 72: 131–160.
Sothern RB, Nelson WL, Halberg F. (1977) A circadian rhythm in susceptibility of mice to the anti-tumor drug, adriamycin. In: Proc XII Intl Conf Intl. Soc Chronobiology, Washington, DC, Aug 10–13, 1975. Milano: Il Ponte, pp. 433–438.
Sothern RB. (1992) Studies on Biologically Rhythmic Natural Modifiers of Cancer Treatment in Mice and Man—Chronotherapeutic Concepts and Applications (PhD thesis). Dept of Pathology, University of Bergen, Norway.
Sothern RB, Tseng TS, Orcutt S, Olszewski N, Koukkari WL. (2002) GIGANTEA and SPINDLY genes linked to the clock pathway that controls circadian characteristics of transpiration in Arabidopsis. Chronobiol Intl 19(6): 1005–1022.
Straume M. (2004) DNA microarray time series analysis: automated statistical assessment of circadian rhythms in gene expression patterning. Methods Enzymol 383: 149–166 (Review).
Tong YL, Nelson WL, Sothern RB, Halberg F. (1977) Estimation of the orthophase-timing of the high values on a non-sinusoidal rhythm — illustrated by the best timing for experimental cancer chronotherapy. In: Proc XII Intl Conf Intl Soc Chronobiol, Washington, DC, Aug 10–13, 1975. Milan: Il Ponte, pp. 765–769.
Wang Y, Brown MB. (1996) A flexible model for human circadian rhythms. Biometrics 52: 588–596.
Went FW. (1974) Reflections and speculations. Ann Rev Plant Physiol 25: 1–26.
Wever RA. (1979) The Circadian System of Man. Results on Experiments Under Temporal Isolation. New York: Springer-Verlag, 276 pp.
Additional References of Interest
Bloomfield E. (1976) Fourier Analysis of Time Series: An Introduction. New York: John Wiley & Sons.
Cugini P, DiPalma L. (1994) Cosint analysis: a procedure for estimating biological rhythms as integral function by measuring the area under their best-fitting waveform profile. Biol Rhythm Res 25: 15–36.
Del Pozo F, Jimenez J, De Feudis F. (1979) Method for the acquisition and analysis of chronopharmacological data. In: Chronopharmacology. Reinberg A, Halberg F, eds. Oxford: Pergamon Press, pp. 185–192.
Hickey DS, Kirkland JL, Lucas SB, Lye M. (1984) Analysis of circadian rhythms by fitting a least squares sine curve. Comp Biol Med 14: 217–233.
Martin W. (1981) Estimation of parameters of circadian rhythms, if measurements cannot be performed around the clock. The case of a band limited signal plus noise. In: Night and Shiftwork: Biological and Social Aspects. Reinberg A, Vieux N, Andlauer P, eds. Oxford: Pergamon Press, pp. 37–44.
Sollberger A. (1970) Problems in the statistical analysis of short periodic time series. J Interdiscipl Cycle Res 1: 49–88.
Wever RA. (1965) A mathematical model for circadian rhythms. In: Circadian Clocks. Aschoff J, ed. Amsterdam: North-Holland Publication, pp. 47–63.
van Cauter E. (1974) Methods for the analysis of multifrequency biological time series. J Interdiscipl Cycle Res 5: 131–148.
Rights and permissions
Copyright information
© 2006 Springer Science+Business Media, Inc.
About this chapter
Cite this chapter
(2006). Chronobiometry: Analyzing for Rhythms. In: Introducing Biological Rhythms. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-4701-5_13
Download citation
DOI: https://doi.org/10.1007/978-1-4020-4701-5_13
Publisher Name: Springer, Dordrecht
Print ISBN: 978-1-4020-3691-0
Online ISBN: 978-1-4020-4701-5
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)