Skip to main content

Integrating Population Genetics with Landscape Ecology to Infer Spatio-temporal Processes

  • Chapter
A Changing World

Part of the book series: Landscape Series ((LAEC,volume 8))

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Avise J.C. 2002. Phylogeography: the history and formation of species. Harvard University Press, Cambridge.

    Google Scholar 

  • Baquette M. 2004. The classical metapopulation theory and the real, natural world: a critical appraisal. Basic and Applied Ecology 5: 213-224.

    Article  Google Scholar 

  • Bolliger J., Wagner H.H. and Turner M.G. 2007. Identifying and quantifying landscape patterns in space and time. In: Kienast F., Wildi O. and Ghosh S. (eds.). A Changing World. Challenges for Landscape Research, Vol. 8: 177-194. Springer Landscape Series, Dordrecht.

    Google Scholar 

  • Buchecker M., Kianicka S. and Junker B. 2007.Value systems: drivers of human-landscape interac-tions. In: Kienast F.,Wildi O. and Ghosh S. (eds.). A Changing World. Challenges for Landscape Research, Vol. 8: 7-26. Springer Landscape Series, Dordrecht.

    Google Scholar 

  • Bürgi M., Hersberger A., Hall M., (Russell) Southgate E.W.B. and Schneeberger N. 2007. Using the past to understand the present land use and land cover. In: Kienast F., Wildi O. and Ghosh S. (eds.). A Changing World. Challenges for Landscape Research, Vol. 8: 133-144. Springer Landscape Series, Dordrecht.

    Google Scholar 

  • Conner J.K. and Hartl D.L. 2004. A primer to ecological genetics. Sinauer, Sunderland.

    Google Scholar 

  • Coulon A., Cosson J.F., Angibault J.M., Cargnelutti B., Galan M., Morellet N., Petit E., Aulagnier S. and Hewison A.J.M. 2004. Landscape connectivity influences gene flow in a Roe Deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology 13: 2841-2850.

    Article  CAS  PubMed  Google Scholar 

  • Duelli P., Baur P., Buchecker M., Gugerli F., Holderegger R. and Wohlgemuth T. 2007. The role of value systems in biodiversity research. In: Kienast F., Wildi O. and Ghosh S. (eds.). A Changing World. Challenges for Landscape Research, Vol. 8: pp. 27-34. Springer Landscape Series, Dordrecht.

    Google Scholar 

  • Ennos R.A. 1994. Estimating the relative rates of pollen and seed migration among plant popu-lations. Heredity 72: 250-259.

    Article  Google Scholar 

  • Ehrlén J. and Eriksson O. 2003. Large-scale spatial dynamics of plants: a response to Freckleton and Watkinson. Journal of Ecology 91: 316-320.

    Article  Google Scholar 

  • Forman R.T.T. 1995. Land mosaics. The ecology of landscapes and regions. Cambridge University Press, Cambridge.

    Google Scholar 

  • Frankham R., Ballou J.D. and Briscoe D.A. 2002. Introduction to conservation genetics. Cambridge University Press, Cambridge.

    Google Scholar 

  • Freckleton R.P. and Watkinson A.R. 2002. Large-scale spatial dynamics of plants: metapopu-lations, regional ensembles and patchy populations. Journal of Ecology 90: 419-434.

    Article  Google Scholar 

  • Godoy J.A. and Jordano P. 2001. Seed dispersal by animals: exact identification of source trees with endocarp DNA microsatellites. Molecular Ecology 10: 2275-2283.

    Article  CAS  PubMed  Google Scholar 

  • Gugerli F., Sperisen C., Büchler U., Magni F., Geburek T., Jeandroz S. and Senn J. 2001. Haplotype variation in a mitochondrial tandem repeat of Norway Spruce (Picea abies) populations sug-gests a serious founder effect during postglacial re-colonisation of the western Alps. Molecular Ecology 10: 1255-1263.

    Article  CAS  PubMed  Google Scholar 

  • Hanski I. 1998. Metapopulation dynamics. Nature 396: 41-49.

    Article  CAS  Google Scholar 

  • Hanski I. and Gaggiotti O. (eds.). 2004. Ecology, genetics and evolution of metapopulations. Elsevier, Amsterdam.

    Google Scholar 

  • Hartl D.L. and Clark A.G. 1997. Principles of population genetics. Sinauer, Sunderland.

    Google Scholar 

  • Hewitt G.M. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London Series B Biological Sciences 359: 183-195.

    Article  CAS  Google Scholar 

  • Hilfiker K., Holderegger R., Rotach P. and Gugerli F. 2004a. Dynamics of genetic variation in Taxus baccata: local versus regional perspectives. Canadian Journal of Botany 82: 219-227.

    Article  Google Scholar 

  • Hilfiker K., Gugerli F., Schütz J.-P., Rotach P. and Holderegger R. 2004b. Low RAPD variation and female-biased sex ratio indicate genetic drift in small populations of the dioecious conifer Taxus baccata in Switzerland. Conservation Genetics 5: 357-365.

    Article  CAS  Google Scholar 

  • Hoffmann M.H., Glass A.S., Tomiuk J., Schmuths H., Fritsch R.M. and Bachmann K. 2003. Analysis of molecular data of Arabidopsis thaliana (l.) Heynh. (Brassicaceae) with geographi-cal information systems (GIS). Molecular Ecology 12: 1007-1019.

    Article  CAS  PubMed  Google Scholar 

  • Holderegger R., Kamm U. and Gugerli F. 2006.Adaptive vs. neutral genetic diversity: implications for landscape genetics. Landscape Ecology 21: 797-807.

    Article  Google Scholar 

  • Jackson R.B., Linder C.R., Lynch M., Purugganan M., Somerville S. and Thayer S.S. 2002. Linking molecular insight and ecological research. Trends in Ecology and Evolution 17: 409-114.

    Article  Google Scholar 

  • Lande R. and Shannon S. 1996. The role of genetic variation in adaptation and population persistence in a changing environment. Evolution 50: 434-437.

    Article  Google Scholar 

  • Landergott U., Holderegger R., Kozlowski G. and Schneller J.J. 2001. Historical bottlenecks decrease genetic diversity in natural populations of Dryopteris cristata. Heredity 87: 344-355.

    Article  CAS  PubMed  Google Scholar 

  • Lang G. 1994. Quartäre Vegetationsgeschichte Europas. Gustav Fischer, Jena.

    Google Scholar 

  • Latta R.G. 2003. Gene flow, adaptive population divergence and comparative population structure across loci. New Phytologist 161: 51-58.

    Article  Google Scholar 

  • Levin S.A. 1992. The problem of pattern and scale in ecology. Ecology 48: 1043-1967.

    Google Scholar 

  • Li H. and Wu J. 2004. Use and misuse of landscape indices. Landscape Ecology 19: 389-399.

    Article  Google Scholar 

  • Lindborg R. and Eriksson O. 2004. Historical landscape connectivity affects present plant species diversity. Ecology 85: 1840-1845.

    Article  Google Scholar 

  • Lowe A., Harris S. and Ashton P. 2004. Ecological genetics. Design, analysis and application. Blackwell, Oxford.

    Google Scholar 

  • Luikart G., England P., Tallmon D., Jordan S. and Taberlet P. 2003. The power and promise of pop-ulation genomics: from genotyping to genome typing. Nature Reviews Genetics 4: 981-994.

    Article  CAS  PubMed  Google Scholar 

  • MacArthur R.H. and Wilson E.O. 1967. The theory of island biogeography. Princeton University Press, Princeton.

    Google Scholar 

  • Manel S., Schwartz M.K., Luikart G. and Taberlet P. 2003. Landscape genetics: combining land-scape ecology and population genetics. Trends in Ecology and Evolution 18: 189-197.

    Article  Google Scholar 

  • Manel S., Gaggiotti O.E. and Waples R.S. 2005. Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology and Evolution 20: 136-142.

    Article  PubMed  Google Scholar 

  • McKay J.K. and Latta R.G. 2002. Adaptive population divergence: markers, QTL and traits. Trends in Ecology and Evolution 17: 285-291.

    Article  Google Scholar 

  • Merilä J. and Crnokrak P. 2001. Comparison of genetic differentiation at marker loci and quantita-tive traits. Journal of Evolutionary Biology 14: 892-903.

    Article  Google Scholar 

  • Oddou-Muratorio S., Petit R.J., Le Guerroue B., Guesnet D. and Demesure B. 2001. Pollen-versus seed-mediated gene flow in a scattered tree species. Evolution 55: 1123-1135.

    CAS  PubMed  Google Scholar 

  • Oddou-Muratorio S., Houot M.-L., Demesure-Musch B. and Austerlitz F. 2003. Pollen flow in the Wild Service Tree, Sorbus torminalis (L.) Crantz. I. Evaluating the paternity analysis procedure in continuous populations. Molecular Ecology 12: 3427-3439.

    CAS  Google Scholar 

  • Odduo-Muratorio S., Demesure-Musch B., Pélissier R. and Gouyon P.H. 2004. Impacts of gene flow and logging history on the local genetic structure of a scattered tree species, Sorbus torminalis (L.) Crantz. Molecular Ecology 13: 3689-3702.

    Article  Google Scholar 

  • Ouborg N.J., Piquot Y. and Van Groenendael J.M. 1999. Population genetics, molecular markers and the study of dispersal in plants. Journal of Ecology 87: 551-568.

    Article  Google Scholar 

  • Pearman P.B. 2001 Conservation value of independently evolving units: sacred cow or testable hypothesis? Conservation Biology 15: 780-783.

    Article  Google Scholar 

  • Petit R.J., Aquinagalde I., De Beaulieu J.-L., Bittkau C., Brower S., Cheddadi R., Ennos R.A., Fineschi S., Grivet D., Lascoux M., Mohanty A., Müller-Starck G., Demesure-Musch B., Palmé A., Martin J.P., Martin J.P., Rendell S. and Vendramin G.G. 2003. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300: 1563-1565.

    Article  CAS  PubMed  Google Scholar 

  • Rannala B. and Mountain J.L. 1997. Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences USA 94: 9147-9201.

    Article  Google Scholar 

  • Reed D.H. and Frankham R. 2001. How closely correlated are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution 55: 1095-1103.

    CAS  PubMed  Google Scholar 

  • Riley S.P.D., Pollinger J., Sauvajot R.M., York E.C., Bromley C., Fuller T.K. and Wayne R.K. 2004. Freeway reduces gene flow in wide-ranging mammalian carnivores. 18th Annual Meeting of the Society for Conservation Biology. Columbia University, New York, pp. 232.

    Google Scholar 

  • Schönswetter P., Stehlik I., Holderegger R. and Tribsch A. 2005. Molecular evidence for glacial refugia of mountain plants in the European Alps. Molecular Ecology 19: 3597-3555.

    Google Scholar 

  • Smouse P.E. and Sork V.L. 2004. Measuring pollen flow in forest trees: an exposition of alternative approaches. Forest Ecology and Management 197: 21-38.

    Article  Google Scholar 

  • Sork V.L., Nason J., Campbell D.R. and Fernandez J.F. 1999. Landscape approaches to historical and contemporary gene flow in plants. Trends in Ecology and Evolution 14: 219-224.

    Article  PubMed  Google Scholar 

  • Sork V.L., Smouse P.E., Apsit V.J., Dyer R.J. and Westfall R.D. 2005. A two-generation analysis of pollen pool genetic structure in flowering dogwood, Cornus florida (Cornaceae), in the Missouri Ozarks. American Journal of Botany 92: 262-271.

    Article  CAS  Google Scholar 

  • Suter W., Bollmann K., Holderegger R. and Senn J. 2007. Landscape permeability: from individual dispersal to population persistence. In: Kienast F., Wildi O. and Ghosh S. (eds.). A Changing World. Challenges for Landscape Research, Vol. 8: 157-174. Springer Landscape Series, Dordrecht.

    Google Scholar 

  • Taberlet P., Fumagalli L., West-Savey A.-G. and Cosson J.-F. 1998. Comparative phylogeography and postglacial colonisation routes in Europe. Molecular Ecology 7: 453-464.

    Article  CAS  PubMed  Google Scholar 

  • Turner M.G., Gardner R.H. and O’Neill R.V. 2001. Landscape ecology in theory and practice. Springer, New York.

    Google Scholar 

  • Vitalis R., Riba M., Colas B., Grillas P. and Olivieri I. 2002. Multilocus genetic structure at contrasted spatial scales of the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta). American Journal of Botany 89: 1142-1155.

    Article  Google Scholar 

  • Walser J.-C., Zoller S., Büchler U. and Scheidegger C. 2001. Species-specific detection of Lobaria pulmonaria (lichenised ascomycete) diaspores in litter samples trapped in snow cover. Molecular Ecology 10: 2129-2138.

    Article  CAS  PubMed  Google Scholar 

  • Whitlock M.C. and McCauley D.E. 1999. Indirect measures of gene flow and migration: FST 1/(4Nm + 1). Heredity 82: 117-125.

    Article  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer

About this chapter

Cite this chapter

Holderegger, R., Gugerli, F., Scheidegger, C., Taberlet, P. (2007). Integrating Population Genetics with Landscape Ecology to Infer Spatio-temporal Processes. In: Kienast, F., Wildi, O., Ghosh, S. (eds) A Changing World. Landscape Series, vol 8. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-4436-6_10

Download citation

Publish with us

Policies and ethics