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Algal Diversity and Evolution

  • Hiroshi Oyaizu
  • Shigeto Ohtsuka

Abstract

The earth was born 4.6 billion years ago, as a planet of the solar system. Then, after the chemical evolution of organic compounds ca. 4.0 to 3.5 billion years ago, life was created by accident. Ancient living cells are presumed to have had RNA as their hereditary element (xcGilbert, 1986). RNA was substituted by DNA and the present form of living cells (possessing protein-synthesizing ability) is the DNA-based organism. DNA organisms evolved to the presently existing various descendents. Driving forces for the explosive evolution that occurred were environmental changes in the biosphere. The decrease in temperature of the biosphere was one of the most important environmental changes associated with early evolution (xcWoese, 1981; xcWoese, 1987). Ancient organisms, living before 3.0 billion years ago, are presumed to have been thermophiles, which required temperatures higher than 70°C. The temperature of the surface of the earth decreased gradually to below 70°C, after 3.0 billion years ago (xcTrakes, 1979), and thermophilic organisms were, thereafter, found in hot springs or in the hydrothermal vents of deep sea volcanos. The second important environmental change in the biosphere was generation of oxygen (xcCloud, 1983). Oxygen was produced by cyanobacteria in the sea, and after oxygen saturation of the sea, oxygen was released into the atmosphere. The generation of oxygen selected against the primitive anaerobic bacteria, leading to selection of aerobic bacteria. The primitive forms of anaerobic bacteria are presumed to be archaebacteria (xcWoese, 1981; xcWoese, 1987). As the concentration of atmospheric oxygen increased, aerobic eubacteria diversified explosively about 2.0 billion years ago. The eucaryotes were created by endosymbiosis about 2.0 billion years ago, and various multicellular organisms were created up to 0.7 billion years ago (xcCloud, 1983).

Keywords

Green Alga Land Plant Chloroplast Genome Plastid Genome Pigment Composition 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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References

  1. Bhattacharya, D. and Elwood, H. J., 1990, Phylogeny of Gracilaria lemaneiformis (Rhodophyta) based on sequence analysis of its small subunit ribosomal RNA coding region. J. Phycol. 26, 181–186.CrossRefGoogle Scholar
  2. Cavalier-Smith, T., 1986, The kingdom Chromista: Origin and systematics. Progress in Phycological Research 4, 309–347.Google Scholar
  3. Cloud, P., 1983, The biosphera. Scientific American 249, 132–144.Google Scholar
  4. Craig, E. A., et al., 1989, SSC1, and essential member of the yeast hsp70 multigene family, encodes a mitochondrial protein. Mol. Cell. Biol. 9, 3000–3008.PubMedGoogle Scholar
  5. Douglas, S. E., 1992, A sec Y homologue is found in the plastid genome of Cryptomonas ϕ. FEBS Letters 298, 93–96.PubMedCrossRefGoogle Scholar
  6. Douglas, S. E. and Durnford, D. G., 1989, The small subunit of ribulose-1,5-bisphosphate carboxylase is plastid-encoded in the chlorophyll c-conteining alga Cryptomonas f. Plant. Mol. Biol. 13, 13–20.PubMedCrossRefGoogle Scholar
  7. Douglas, S. E., et al., 1991, Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eucaryotes. Nature 350, 148–151.PubMedCrossRefGoogle Scholar
  8. Douglas, S. E. and Turner, S., 1991, Molecular evidence for the origin of plastids from a cyanobacterium-like ancester. J. Mol. Evol. 33, 267–273.PubMedCrossRefGoogle Scholar
  9. Eschbach, S., et al., 1991, Primary and secondary structure of the nuclear small subunit ribosomal RNA of the Cryptomonad Pyrenomonas salina as inferred from the gene sequence: Evolutionary implications. J. Mol. Evol. 32, 247–252.PubMedCrossRefGoogle Scholar
  10. Felsenstein, J., 1978, Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401–410.CrossRefGoogle Scholar
  11. Felsenstein, J., 1985, Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783–791.CrossRefGoogle Scholar
  12. Gilbert, W., 1986, The RNA world. Nature 319, 618.CrossRefGoogle Scholar
  13. Gray, M. W., 1988, Organelle origins and ribosomal RNA. Biochem. Cell Biol. 66, 325–348.PubMedCrossRefGoogle Scholar
  14. Gray, M. W., 1989, The evolutionary origins of organelles. Trends in Genetics 5, 294–299.PubMedCrossRefGoogle Scholar
  15. Gray, M. W., et al., 1989, On the evolutionary origin of the plant mitochondrion and its genome. Proc. Natl. Acad. Sci. U.S.A. 86, 2267–2271.PubMedCrossRefGoogle Scholar
  16. Green, B. R., 1976, Covalently closed minicircular DNA associated with Acetabularia chloroplasts. Biochim. Biophys. Acta 447, 156–166.PubMedGoogle Scholar
  17. Gunderson, J. H., et al., 1987, Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes. Proc. Natl. Acad. Sci. U.S.A. 84, 5823–5827.PubMedCrossRefGoogle Scholar
  18. Hemmingsen, S. M., et al., 1988, Homologous plant and bacterial proteins chaperone oligomeric protein assembly. Nature 333, 330–334.PubMedCrossRefGoogle Scholar
  19. Hendriks, L., et al., 1991, The evolutional position of the rhodophyte Porphyra umbilicalis and the Basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequences of small ribosomal subunit RNA. J. Mol. Evol. 32, 167–177.PubMedCrossRefGoogle Scholar
  20. Hiratsuka, J., et al., 1989, The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol. Gen. Genet. 217, 185–194.PubMedCrossRefGoogle Scholar
  21. Huss, V. A. R. and Sogin, M. L., 1990, Phylogenetic position of some Chlorella species within the Chlorococcales based upon complete small-subunit ribosomal RNA sequences. J. Mol. Evol. 31, 432–442.PubMedCrossRefGoogle Scholar
  22. Hwang, S. and Tabita, F. R., 1991, Cotranscription, deduced primary structure, and expression of the chloroplast-encoded rbcL and rbcS genes of the marine diatom Cylindrotheca sp. strain N1. J. Biol. Chem. 266, 6271–6279.PubMedGoogle Scholar
  23. Iwabe, N., et al., 1989, Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86, 9355–9359.PubMedCrossRefGoogle Scholar
  24. Kim, Y., et al., 1994, Chloroplast small-subunit RNA gene sequence from Chlamydomonas parkeae (Chlorophyta): molecular phylogeny of a green alga with a peculiar pigment composition. Eur. J. Phycol. 29, 213–217.CrossRefGoogle Scholar
  25. Kubo, T., et al., 1995, The chloroplast trnP-trnW-petG gene cluster in the mitochondrial genomes of Beta vulgaris, B. trigyna and B. webbiana: evolutionary aspects. Curr. Genet. 27, 285–289.PubMedCrossRefGoogle Scholar
  26. Lonsdale, D. M., et al., 1983, Maize mitochondrial DNA contains a sequence homologous subunit gene in chloroplast DNA. Cell 34, 1007–1014.PubMedCrossRefGoogle Scholar
  27. Ludwig, M. and Gibbs, S. P., 1985, DNA is present in the nucleomorph of cryptomonads: Further evidence that the chloroplast evolved from a eukaryotic endosymbiont. Protoplasma 127, 9–20.CrossRefGoogle Scholar
  28. Manhart, J. R., et al., 1989, Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping. Mol. Gen. Genet. 216, 417–421.PubMedCrossRefGoogle Scholar
  29. Margulis, L. and Schwartz, K. V., 1982, Five Kingdoms. San Francisco, Freeman & Co.Google Scholar
  30. Martin, W., et al., 1992, Molecular phylogenies of plastid origins and algal evolution. J. Mol. Evol. 35, 385–404.CrossRefGoogle Scholar
  31. McKerracher, L. and Gibbs, S. P., 1982, Cell and nucleomorph division in the alga Cryptomonas. Can. J. Bot. 60, 2440–2452.Google Scholar
  32. Ohta, N., et al., 1994, Physical map of the plastid genome of the unicellular red alga Cyanidium caldarium strain RK-1. Curr. Genet. 26, 136–138.PubMedCrossRefGoogle Scholar
  33. Ohyama, K., et al., 1986, Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha. Nature 322, 572–574.CrossRefGoogle Scholar
  34. Oyaizu, H., et al., 1993, Polyphyletic origins of chlorophyte chloroplasts. J. Gen. Appl. Microbiol. 39, 313–319.Google Scholar
  35. Padmanabhan, U. and Green, B. R., 1978, The kinetic complexity of Acetabularia chloroplast DNA. Biochim. Biophys. Acta 521, 67–73.PubMedGoogle Scholar
  36. Palmer, J. D., 1985, Comparative organization of chloroplast genomes. Ann. Rev. Genet. 19, 325–354.PubMedCrossRefGoogle Scholar
  37. Pancic, P. G., et al., 1992, Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement. J. Mol. Biol. 224, 529–536.PubMedCrossRefGoogle Scholar
  38. Rausch, H., et al., 1989, Phylogenetic relationships of the green alga Volvox carteri deduced from small-subunit ribosomal RNA comparisons. J. Mol. Evol. 29, 255–265.PubMedCrossRefGoogle Scholar
  39. Reith, M. and Cattolico, R. A., 1986, Inverted repeat of Olisthodiscus luteus chloroplast DNA contains genes for both subunits of ribulose-1,5-bisphosphate carboxylase and the 32,000-dalton QB protein: Phylogenetic implications. Proc. Natl. Acad. Sci. 83, 8599–8603.PubMedCrossRefGoogle Scholar
  40. Reith, M. and Munholland, J., 1993, A high-resolution gene map of the chloroplast genome of the red alga Porphyra purpurea. Plant Cell 5, 465–475.PubMedCrossRefGoogle Scholar
  41. Saitou, N. and Nei, M., 1986, The number of nucleotiedes required to determine the branching order of three species, with special reference to the Human-Chimpanzee-Gorilla divergence. J. Mol. Evol. 24, 189–204.PubMedCrossRefGoogle Scholar
  42. Saitou, N. and Nei, M., 1987, The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425.PubMedGoogle Scholar
  43. Sasa, T., et al., 1992, A yellow marine Chlamydomonas morphology and pigment composition. Plant Cell Physiol. 33, 527–534.Google Scholar
  44. Scaramuzzi, C. D., et al., 1992, Characterisation of a chloroplast-encoded secY homologue and atpH from a chromophytic alga. FEBS Letters 304, 119–123.PubMedCrossRefGoogle Scholar
  45. Scaramuzzi, C. D., et al., 1992, Heat shock Hsp70 protein is chloroplast-encoded in the chromophytic alga Pavlova lutherii. Plant Mol. Biol. 18, 467–476.PubMedCrossRefGoogle Scholar
  46. Schuster, W. and Brennicke, A., 1987, Plastid DNA in the mitochondrial genome of Oenothera: intra-and interorganellar rearrangements involving part of the ribosomal cistron. Mol. Gen. Genet. 210Google Scholar
  47. Sederoff, R. R., et al., 1986, Maize mitochondrial plasmid S-1 sequences share homology with chloroplast gene psbA. Genetics 113, 469–482.PubMedGoogle Scholar
  48. Shinozaki, K., et al., 1986, The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J. 5, 2043–2049.PubMedGoogle Scholar
  49. Sourdis, J. and Nei, M., 1988, Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree. Mol. Biol. Evol. 5, 298–311.PubMedGoogle Scholar
  50. Stern, D. B. and Palmer, J. D., 1984, Extensive and widespread homologies between mitochondrial DNA and chloroplast DNA in higher plants. Proc. Natl. Acad. Sci. USA 81, 1946–1950.PubMedCrossRefGoogle Scholar
  51. Trakes, L. A., 1979, Climates throughout geologic time. Amsterdam, Elsevier Scientific Publishing Co.Google Scholar
  52. Tymms, M. J. and Schweiger, H., 1985, Tandemly repeated nonribosomal DNA sequences in the chloroplast genome of an Acetabularia mediterranea strain. Proc. Natl. Acad. Sci. USA 82, 1706–1710.PubMedCrossRefGoogle Scholar
  53. Valentin, K., 1993, Sec A is plastid-encoded in a red alga: implications for the evolution of plastid genomes and the thylakoid protein import apparatus. Mol. Gen. Genet. 236, 245–250.PubMedCrossRefGoogle Scholar
  54. Valentin, K. and Zetsche, K., 1989, The genes of both subunits of ribulose-1,5-bisphosphate carboxylase constitute and operon on the plastome of a red alga. Curr. Genet. 16, 203–209.PubMedCrossRefGoogle Scholar
  55. Whatley, J. M., et al., 1979, From extracellular to intracellular: the establishment of mitochondria and chloroplasts. Proc. R. Soc. Lond. B 204, 165–187.PubMedCrossRefGoogle Scholar
  56. Wheelis, M. L., et al., 1992, On the nature of global classification. Proc. Natl. Acad. Sci. USA 89, 2930–2934.PubMedCrossRefGoogle Scholar
  57. Woese, C. R., 1981, Archaebacteria. Scientific American 244, 94–106.CrossRefGoogle Scholar
  58. Woese, C. R., 1987, Bacterial evolution. Microbiol. Rev. 51, 221–271.PubMedGoogle Scholar
  59. Woese, C. R., et al., 1990, Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87, 4576–4579.PubMedCrossRefGoogle Scholar
  60. Wolfe, K. H., et al., 1992, Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: loss or accelerated sequence evolution of tRNA and ribosomal protein genes. J. Mol. Evol. 35, 304–317.PubMedCrossRefGoogle Scholar

Copyright information

© Plenum Press, New York 1996

Authors and Affiliations

  • Hiroshi Oyaizu
    • 1
  • Shigeto Ohtsuka
    • 1
  1. 1.School of Agriculture and Life ScienceUniversity of TokyoTokyoJapan

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