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Molecular Typing and Clustering Analysis as a Tool for Epidemiology of Infectious Diseases

  • Sylvia M. Bruisten
  • Leo Schouls
Chapter
Part of the Statistics for Biology and Health book series (SBH)

Abstract

This chapter describes the mechanism of typing procedures of human pathogens and gives some examples to substantiate the added value of typing and clustering analysis in epidemiology. Three steps need to be discerned in the process toward molecular clustering analysis. First, the pathogen must be recognized and identified (the diagnostic step). Second, the typing of the pathogen genome is performed and third, the clustering of the specific type with other known or newly identified types is needed for added epidemiological information.

Keywords

Polymerase Chain Reaction Product Restriction Fragment Length Polymorphism Amplify Fragment Length Polymorphism Typing Technique IS6110 Copy 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Notes

Acknowledgment

The authors wish to thank Prof. Dr. R.A. Coutinho for his valuable comments to improve the readability for non-laboratory trained persons.

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Copyright information

© Springer Science+Business Media, LLC 2009

Authors and Affiliations

  1. 1.Cluster Infectious Diseases, Public Health Service of AmsterdamAmsterdamThe Netherlands
  2. 2.Laboratory for Infectious Diseases and Perinatal screeningNational Institute for Public Health and the EnvironmentBilthovenThe Netherlands

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