Abstract
African oil palm (Elaeis guineensis Jacq) produces more than five times the yield of oil/year/hectare of any annual oil crop. In consequence, it represents a key species for meeting future vegetable oil needs (both for food and for industry) against the background of a rising world population. As it is a tree crop and naturally out-crossing current planting material is, in contrast to most annual crops, generally heterogeneous. This complicates breeding for future needs. Recent developments in molecular biology have the potential to substantially alter approaches for the genetic improvement of oil palm. Some of these biotechnological approaches have already made an impact, for example, somatic embryogenesis for clonal propagation and routine genetic fingerprinting for quality control. The recent development of plant sequence-based approaches, supported by bioinformatics and broadly classified into genomics (DNA) and functional genomics (mRNA, protein and metabolites) could lead to a step-wise change in our understanding of the genetic basis of agronomic traits and the development of practical tools and trait information for plant breeding. These high-throughput developments add significant new potential to the two broad approaches generally adopted in crop molecular research. The “bottom-up” approach involves investigating individual genes and the pathways in which they operate with a long-term aim to develop a complete understanding of these networks and their importance in trait specification. The alternative “top-down” approach starts with the trait in the species of interest and uses inheritance studies, anonymous molecular markers, and physiological techniques to begin to dissect the trait and its interactions with the environment. Genomics and functional genomics represent a suite of techniques which can help to bridge the gap between the bottom-up and the top-down approaches. In this article we review recent progress in developing molecular resources for oil palm and assess the potential impact that specific cutting edge techniques, already developed and implemented in other plant and crop species, could have in oil palm. The article gives background information on the various technologies, but is not intended to be exhaustive. A number of good text books and articles are available which go into greater detail. It also does not go into depth on discoveries in other species, except to illustrate their potential utility in oil palm.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Abdullah F (2000) Sequential and spatial mapping of the incidence of basal stem rot of oil palms (Elaeis guineensis) on a former coconut (Cocos nuciifera) plantation. pp 183–194. In: Flood J, Bridge PD, Holderness M (eds) Ganoderma disease of perenial crops. CABI international, Wallingford, UK
Abdullah R, Zainal A, Heng WY, Li LC, Beng YC, et al. (2005) Immature embryo: A useful tool for oil palm (Elaeis guineensis Jacq) genetic transformation studies. Electronic J Biotech 8(1):25–34
Adam H, Jouannic S, Escoute J, Duval Y, Verdeil J-T, et al. (2005) Reproductive developmental complexity in African oil palm (Elaeis guineensis Arecaceae). Am J Bot 92(11):1836–1852
Adam H, Jouannic S, Morcillo S, Richard F, Duval Y, et al. (2006) MADS box genes in oil palm (Elaeis guineensis): Patterns in the evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA subfamilies. J Mol Evol 62(1):15–31
Afolabi AS, Worland B, Snape JW, Vain P (2004) A large-scale study of rice plants transformed with different T-DNAs provides new insights into locus composition and T-DNA linkage configurations. Theor Appl Genet 109:815–826
Akbari M, Wenzl P, Caig V, Carling J, Xia L, et al. (2006) Diveristy Arrays Technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theor Appl Genet 113:1409–1420
Alerlenc Bertossi F, Noirot M, Duval Y (1999) BA enhances the germination of oil palm somatic embryos derived from embryogenic suspension cultures. Plant Cell Tissue Organ Cult 56(1):53–57
Asemota O, Shah FH (2004) Detection of mesocarp oleoyl-thioesterase gene of the South American oil palm Elaeis oleifera by reverse transcriptase polymerase chain reaction. Afr J Biotech 3(11):595–598
Barcelos E, Amblard P, Berthaud J, Seguin M (2002) Genetic diversity and relationship in American and African oil palm as revealed by RFLP and AFLP molecular markers. Pesquisa Agropecuaria Brasileira 37(8):1105–1114
Baudouin L (1992) Use of molecular markers for oil palm breeding. I. Protein markers. Oleagineux 47:681–691
Beinaret A, Vanderweyen R (1941) Contribution à l’étude génétique et biométrique des variétés d’Elaeis guineensis Jacq. Publs INEAC Sér Sci 27
Benfrey PN, Protopapas AD (2005) Genomics. Pearson Education Ltd, London ISBN 0-13-047019-8
Bennett MD, Leitch IJ (2005) Plant DNA C-values database (release 4.0) http://www.rbgkew.org.uk/cval/homepage.html
Bennett MD, Smith JB (1991) Nuclear DNA amounts in angiosperms. Philo Trans Roy Soc London B 334:309–345
Bhasker S, Mohankumar C (2001) Association of lignifying enzymes in shell synthesis of oil palm fruit (Elaeis guineensis - dura variety). Indian J Exp Bio 39(2):160–164
Billotte N, Lagoda PJL, Risterucci A-M, Baurens F-C (1999) Microsatellite-enriched libraries: applied methodology for the development of SSR markers in tropical crops. Fruits 54:277–288
Billotte N, Risterucci AM, Barcelos E, Noyer JL, Amblard P, et al. (2001) Development, characterisation, and across-taxa utility of oil palm (Elaeis guineensis Jacq) microsatellite markers. Genome 44:413–425
Billotte N, Marseillac N, Risterucci AM, Adon B, Brottier P, et al. (2005) Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq). Theor Appl Genet 110(4):754–65
Billotte N, Amblard P, Durand-Gasselin T, Flori A, Nouy B, et al. (2006) Oil palm biotechnology at CIRAD. Proc Intl Oil Palm Conf 15:19–22
Blaak G (1970) Epistasis for crown disease in the oil palm (Elaeis guineensis Jacq) Euphytica 19(1):22–24
Blaak G, Sparnaaji LD, Menendez T (1963) Breeding and inheritance in oil palm (E. guineensis Jacq) Part II. Methods of bunch quality analysis. J W Afr Inst Oil Palm Res 4:146–155
Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, et al. (2000) Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nature Biotechnol 18:630–634
Breure CJ, Soebagjo FX (1991) Factors associated with occurrence of crown disease in oil palm (Elaeis guineensis Jacq) and its effect on growth and yield. Euphytica 54(1):55–64
Castilho A, Vershinin A, Heslop-Harrison JS (2000) Repetitive DNA and the chromosomes in the genome of oil palm (Elaeis guineensis). Ann Bot 85:837–844
Cha TS, Shah FH (2001) Kernel-specific cDNA clones encoding three different isoforms of seed storage protein glutelin from oil palm Elaeis guineensis. Plant Sci 160(5):913–923
ChanKook W (2005) Best-developed practices and sustainable development of the oil palm industry. J Oil Palm Res 17:124–135
Chaudhury R, Malik SK (2004) Genetic conservation of plantation crops and spices using cryopreservation. Indian J Biotech 3:348–358
Chen JJ, Rowley JD, Wang SM (2000) Generation of longer cDNA fragments from serial analysis of gene expression tags for gene identification. Proc Natl Acad Sci USA 97(1):349–353
Chen S, Harmon AC (2006) Advances in plant proteomics. Proteomics 6:5504–5516
Choo YM, Cheah KY (2000) Biofuel. In: Basiron Y, Jalani BS, Chan KW (eds) Adv Oil Palm Res 2:1293–1345
Choong CY, Shah FH, Rajanaidu N, Zakri AH (1996) Isoenzyme variation of Zairean oil palm (Elaies guineensis Jacq) germplasm collection. Elaeis 8:45–53
Chua KL, Singh R, Cheah SC (2001) Construction of oil palm (Elaies guineensis Jacq) linkage maps using AFLP markers. Proc Intl Palm Oil Congr 2001:461–465
Chuah TG, Wan Azlina AGK, Robiah Y, Omar R (2006) Biomass as renewed energy sources in Malaysia: an overview. Int J Green Energy 3(3):323–346
Cochard B, Amblard P, Durand-Gasselin T (2005) Oil palm genetic improvement and sustainable development. (Feature: research, oil palm and sustainable development) OCL - Oleagineux, Corps Gras, Lipides 12(2):141–147
Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts. Euphytica 142:169–196
Comai L, Young K, Till BJ, Reynolds SH, Greene EA, et al. (2004) Efficient discovery of DNA polymorphisms in natural populations by ecotilling. Plant J 37:778–86
Corley RHV (1985) Yield potentials of plantation crops. In: Potassium in the agricultural systems of the humid tropic. Int Potash Inst Bern, Switzerland
Corley RHV (2005) Illegitimacy in oil palm breeding – a review. J Oil Palm Res 17(1):64–69
Corley RHV, Donough CR (1995) Effects of defoliation on sex differentiation in oil palm clones. Exp Agric 31(17):177–189
Corley RHV, Lee CH (1992) The physiological basis for genetic improvement of oil palm in Malaysia. Euphytica 60:179–184
Corley RHV, Tinker PB (2003) The oil palm. 4th Ed. World Agricultural Series. Blackwell Publishers Ltd, Oxford UK
Corley RHV, Lee CH, Law IH, Wong CY (1986) Abnormal flower development in oil palm clones. The Planter 62:233–240
de Franqueville H (2003) Oil palm bud rot in Latin America. Exp Agric 39(3):225–240
de Franqueville H, de Greef W (1987) Hereditary transmission of resistance to vascular wilt of oil palm: facts and hypotheses. In: Halim A, Hassan Y, Chew PS, Wood BJ, Pushparajah E (eds) Proc Intl Oil Palm Conf:118–129
Dettmer K, Aronov PA, Hammock BD (2007) Mass spectrometry-based metabolomics. Mass Spectrometry Rev 26:51–78
Dumet D, Engelmann F, Chabrillange N, Dussert S, Duval Y (2000) Cryopreservation of oil-palm polyembryonic cultures. (JIRCAS International Agriculture Series No8) In: Cryopreservation of tropical plant germplasm: current research progress and application. Proc Intl workshop Tsukuba Japan October 1998 International Plant Genetic Resources Institute (IPGRI) Rome Italy pp. 172–177
Durand-Gasselin T, Baudouin L, Cochard B, Adon B, Cao TV (1999) Oil palm genetic improvement strategies. Plantations, Recherche, Developpement 6(5):344–358
Durand-Gasselin T, Asmady H, Flori A, Jacqeumard JC, Hayun Z, et al. (2005) Possible sources of genetic resistance in oil palm (Elaeis guineensis Jacq) to basal stem rot caused by Ganoderma boninense – prospects for future breeding. Mycopathologia 159(1):93–100
Ellis MH, Spielmeyer W, Gale GR, Rebetzke GJ, Richards RA (2002) “Perfect” markers for the Rht-B1b and Rht-D1b dwarfing genes in wheat. Theor Appl Genet 105:1038–1042
Elyana MD, Halimah A, Boon SH, Amos TCY, Low ETL, et al. (2005) Expressed sequence tags (ESTs): an approach to gene discovery in oil palm (Elaeis guineensis Jacq) tissue culture. Proc Conf Biotechnol Plantation Commodities:344–353
Eeuwens CJ, Lord S, Donough CR, Rao V, Vallejo G, et al. (2002) Effects of tissue culture conditions during embryoid multiplication on the incidence of “mantled” flowering in clonally propagated oil palm. Plant Cell Tiss Organ Cult 70:311–323
Falconer DJ (1989) Introduction to quantitative Genetics. 3rd Edition. Longman Scientific and Technical, Harlow, UK
FAO (2005) Status of research and application of crop biotechnologies in developing countries. FAO, Rome ISBN 92-5-105290-5
Feschotte C, Jiang N, Wessler S (2002) Plant transposable elements: where genetics meets genomics. Nat Rev Genet 3:329–341
Flood J (2005) A review of Fusarium wilt of oil palm caused by F. oxysporum f sp. Elaedis. Phytopathol 95(6) suppl
Flood J, Bridge P (2000) Ganoderma diseases of perennial crops. CABI Publishing, Wallingford, UK
Frengen E, Weichenhan D, Zhao B, Osoegawa K, van Geel M, et al. (1999) A modular, positive selection bacterial artificial chromosome vector with multiple cloning sites. Genomics 58:250–253
Fu D, Scuzs P, Yan L, Helguera M, Skinner JS, et al. (2005) Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat. Mol Gen Genomics 273:54–65
Fulton T, van der Hoeven R, Eannetta N, Tanksley S (2002) Identification, analysis and utilization of a conserved ortholog set (COS) markers for comparative genomics in higher plants. Plant Cell 14:1457–1467
Galeano CH (2005) Standardising amplified fragment-length polymorphisms (AFLP) for Dura oil palm (Elaeis guineensis Jacq) and preliminary molecular characterization studies. Agronomia Colombiana 23(1):42–49
Ghesquiére M (1984) Enzyme polymorphism in oil palm (Elaeis guineensis Jacq) I. Genetic control of 9 enzyme-systems. Oleagineaux 39:561–574
Ghesquiére M (1985) Enzyme polymorphism in oil palm (Elaies guineensis Jacq) II Variability and genetic structure of seven origins of oil palm. Oleagineux 40:529–540
Guo Y, Fu Z, Van Eyk JE (2007) A Proteomic primer for the clinician. Proc Am Thoracic Soc 4:9–17
Hafeez F (2005) PhD thesis submitted to the University of Cambridge ‘Genome structure and organisation of oil palm (E. guineensis Jacq)
Hammond JP, Broadley MR, Craigon DJ, Higgins J, Emmerson ZF, et al. (2005) Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. Plant Methods 1:10
Hammond JP, Bowen HC, White PJ, Mills V, Pyke PA, et al. (2006) A comparison of the Thlaspi caerulescens and Thlaspi arvense shoot transcriptomes. New Phytologist 170(2):239–260
Hanley S, Edwards D, Stevenson D, Haines S, Hegarty M, et al. (2000) Identification of transposon-tagged genes by the random sequencing of Mutator-tagged DNA fragments from Zea mays Plant J 23(4):557–566
Hardon JJ (1969) Interspecific hybrids in the genus Elaeis II vegetative growth and yield of F1 hybrids E. guineensis x E. oleifera. Euphytica 18(3):380–388
Hardon JJ, Tan GY (1969) Interspecific hybrids in the genus Elaeis I crossability, cytogenetics and fertility of F1 hybrids of E. guineensis x E. oleifera. Euphytica 18(3):372–379
Hasan Y, Foster HL, Flood J (2005) Investigations on the causes of upper stem rot (USR) on standing mature oil palms. Mycopathologia 159(1):109–112
Hassan K, Sukaimi J (1993) Industrial moulding of oil palm particles. I. Suitability of oil palm trunk and frond for moulded table-tops. Palm Oil Inst of Malaysia Bulletin 27:1–7
Hayati A, Wickneswari R, Maizura I, Rajanaidu N (2004) Genetic diversity of oil palm (Elaeis guineensis Jacq) germplasm collections from Africa: implications from improvement and conservation of genetic resources. Theor Appl Genet 108: 1274–1284
Henderson J, Osborne DJ (1990) Cell separation and anatomy of abscission in the oil palm Elaeis guineensis Jacq J Exp Bot 41(2):203–210
Henderson J, Davies HA, Heyes SJ, Osborne DJ (2001) The study of a monocotyledon abscission zone using microscopic, chemical, enzymatic and solid state 13C CP/MAS NMR analyses. Phytochem 56:131–139
Houmiel KL, Slater S, Broyles D, Casagrande L, Colburn S, et al. (1999) Poly (beta-hydroxybutyrate) production in oil seed leucoplasts of Brassica napus. Planta 20:547–550
Ibrahim R (2003) Structural, mechanical and optical properties of recycled paper blended with oil palm empty bunch pulp. J Oil Palm Res 15(2):28–34
Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res 29:e25
Jack PJ, Mayes S (1993) Use of molecular markers for oil palm breeding. II. Use of DNA markers (RFLPs). Oleagineux 48(1):1–8
Jack PL, Dimitrijevic TAF, Mayes S (1995) Assessment of nuclear, mitochondrial and chloroplast RFLP markers in oil palm (Elaeis guineensis Jacq). Theor Appl Genet 90:643–649
Jack PL, James C, Price Z, Groves L, Corley RHV, et al. (1998) Application of DNA markers in oil palm breeding. Proc Intl Oil Palm Conf Indonesian Oil Palm Res Institute, Medan, Indonesia, pp 315–324
Jacquemard J-C (1998) The tropical agriculturist; oil palm. MacMillan Education Ltd, London and Basingstoke, UK
Jaligot E, Rival A, Baule T, Dussert S, Verdeil J-L (2000) Somaclonal variation in oil palm (Elaies guineensis Jacq): the DNA methylation hypothesis. Plant Cell Rep 19:684–690
Jaligot E, Beule T, Verdeil J-L, Tregear J, Rival A (2003) DNA methylation vs. somaclonal variation in higher plants: oil palm as a case study. Acta Horticulturae 625:345–353
Jaligot E, Beule T, Baurens F-C, Billotte N, Rival A (2004) Search for methylation-sensitive amplification polymorphisms associated with the “mantled” variant phenotype in oil palm (Elaeis guineensis Jacq) Genome 47(1):224–228
Jouannic S, Argout X, Lechauve F, Fizames C, Borgel A, et al. (2005) Analysis of expressed sequence tags from oil palm (Elaeis guineensis). FEBS Letters 579(12):2709–2714
Jones LH (1998) Metabolism of cytokinins by tissue culture lines of oil palm (E. guineensis Jacq) producing normal and abnormal flowering palms. J Plant Growth Reg 17(4):205–214
Kalendar R, Schulman HA (2006) IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nature Protocols 1(5):2478–2484
Khemvong S, Suvachittanont W (2005) Molecular cloning and expression of a cDNA encoding 1-deoxy-D-xylulose-5-phosphate synthase from oil palm Elaeis guineensis Jacq. Plant Sci 169(3):571–578
Klein PE, Klein RR, Cartinhour SW, Ulanch PE, Dong J, et al. (2000) A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map. Genome Res 10:789–807
Kubis SE, Castilho AMMF, Vershinin AV, Seymour J, Heslop-Harrison JS (2003) Retroelements, transposons and methylation status in the genome of oil palm (Elaeis guineensis) and the relationship to somaclonal variation. Plant Mol Biol 52:69–79
Kularatne RS, Shah FH, Rajanaidu N (2001) The evaluation of genetic diversity of Deli dura and African oil palm germplasm collection by AFLP technique. Trop Agric Res 13:1–12
Kumar A, Bennetzen JL (1999) Plant retrotransposons. Ann Rev Genet 33 479–532
Kuntom A, Hamirin K (2000) Soaps from palm products. In: Basiron Y, Jalani BS, Chan KW (eds Advances in Oil Palm Research, Vol 2 Malaysian Palm Oil Board. Kuala Lumpur. Malaysian Palm Oil Board (MPOB). pp 1102–1140
Latiffah Z, Harikrishna K, Tan SG, Tan SH, Abdullah F, Ho YW (2002) Restriction analysis and sequencing of the ITS regions and 5.8S gene of rDNA of Ganoderma isolates from infected oil palm and coconut stumps in Malaysia. Annals Appl Biol 141(2):133–142
Lawrence MR, Marshall DF, Davies P (1995) Genetics of genetic conservation. II. Sample size when collecting seed of cross-pollinating species and the information that can be obtained from the evaluation of material held in gene banks. Euphytica 84(2):101–107
Lee J, Cooper B (2006) Alternative workflows for plant proteomic Analysis. Mol BioSyst 2:621–626
Lee M-P, Yeun LH, Abdullah R (2006) Expression of Bacillus thuringiensis insecticidal protein gene in transgenic oil palm. Electronic J Biotech 9(2):117–126
Lim CC, Rao V (2004) DNA marker technology and private sector oil palm breeding. The Planter 80:611–628
Lim CC, Rao V (2005) DNA fingerprinting of oil palm – choice of tissues. J Oil Palm Res 17:136–144
Low ETL, Tan JS, Chan PL, Boon SH, Wong YL, et al. (2006) Developments toward the application of DNA chip technology in oil palm tissue culture. J Oil Palm Res (Special Issue – April 2006):87–96
Luyindula N, Mantantu N, Dumortier F, Corley RHV (2005a) The effects of inbreeding on growth and yield of oil palm. Euphytica 143(1–2):9–17
Luyindula N, Corley RHV, Mantantu N (2005b) A comparison of the Deli Dumpy and Pobe Dwarf short-stemmed oil palms and their outcrossed progenies. J Oil Palm Res 17:152–159
Madon M, Heslop-Harrison JS, Schwarzacher T, Mohd Rafdi MH, Clyde MM (2005a) Cytological analysis of oil palm pollen mother cells (PMCs). J Oil Palm Res 17:176–180
Madon M, Clyde MM, Hashim H, Mohd Yusuf Y, Mat H, Saratha S (2005b) Polyploid induction of oil palm through colchicine and oryzalin treatments. J Oil Palm Res 17:110–123
Maizura I, Cheah SC, Rajanaidu N (2001) Genetic diversity of oil palm germplasm collections using RFLPs. Proc 2001 PIPOC Intl Palm Oil Congr – Cutting-edge technologies for sustained competitiveness (Agriculture):526–535
Maizura I, Rajanaidu N, Zakri A, Cheah S (2006) Assessment of Genetic Diversity in Oil Palm (Elaeis guineensis Jacq) using restriction fragment length polymorphism (RFLP). Genet Resources Crop Evol 53(1):187–195(9)
Mannan MA, Alexander J,Ganapathy C, Teo DCL (2005) Quality improvement of oil palm shell (OPS) as coarse aggregate in lightweight concrete. Building Environ 41:1239–1242
Maria M, Clyde MM, Cheah SC (1995) Cytological analysis of Elaeis guineensis (tenera) chromosomes. Elaeis 7:122–134
Masani Mat Yunus A, Ho CL, Parveez GKA (2001) Construction of PHB gene expression vectors for the production of biodegradable plastics in transgenic oil palm. Proc Int Palm oil Congr:694–711
Masi P, Zeuli PLS, Donini P (2003) Development and analysis of multiplex microsatellite markers sets in common bean (Phaseolus vulgaris L). Mol Breed 11(4):303–313
Matthes M, Singh R, Cheah S-C, Karp A (2001) Variation in oil palm (Elaeis guineensis Jacq) tissue culture-derived regenerants revealed by AFLPs with methylation-sensitive enzymes. Theor Appl Genet 102:971–979
Mayes S, James CM, Pluhar V, Batty N, Jack PL, Corley RHV (1995) The application of biotechnology to oil palm – prospects and progress. In: Rao V, Henderson IE, Rajanaidu N (eds) Recent developments in oil palm tissue culture and biotechnology. Proc Intl Palm Oil Congr, Palm Oil Res. Inst. Malaysia, Kuala Lumpur, Malaysia: pp 171–189
Mayes S, James CM, Horner SF, Jack PL, Corley RHV (1996) The application of restriction fragment length polymorphism for the genetic fingerprinting of oil palm (Elaeis guineensis Jacq). Mol Breed 2:175–180
Mayes S, Jack PL, Marshall DF, Corley RHV (1997) Construction of a RFLP genetic linkage map for oil palm (Elaeis guineensis Jacq). Genome 40:116–122
Mayes S, Jack PL, Corley RHV (2000) The use molecular markers to investigate the genetic structure of an oil palm breeding programme. Heredity 85:288–293
Mayes S, Holdsworth MJ, Pellegrineschi A, Reynolds M (2005a) Allying genetic and physiological innovations to improve productivity of wheat and other crops. pp 89–122. In: Sylvester-Bradley R, Wiseman J (eds) Yields of farmed species – constraints and opportunities in the 21mathrmst century. Nottingham University Press, Nottingham
Mayes S, Parsley K, Sylvester-Bradley R, May S, Foulkes MJ (2005b) Integrating Genetic information into plant breeding programmes: how will we produce new varieties from molecular variation using bioinformatics? Annals Appl Biol 146:223–237
McCallum CM, Comai L, Greene EA, Henikoff S (2000) Targeting induced local lesions in genomes (TILLING) for plant functional genomics. Plant Physiol 123:439–442
Mohd Basri W, Siti Nor AA, Henson IE (2005) Oil palm – achievements and potential. Oil Palm Bull 50:1–13
Mohd Din A, Rajanaidu N, Kushairi A (2005) Exploitation of genetic variability in oil palm. Proc MOSTA best practices workshops: agronomy and crop management, Malaysian Oil Sci Technol Assoc:19–42
Morcillo F, Gagneur C, Adam H, Richaud F, Rajinder S, et al. (2006) Somaclonal variation in micropropagated oil palm. Characterization of two novel genes with enhanced expression in epigenetically abnormal cell lines and in response to auxin. Tree Physiol 26(5):585–594
Moretzsohn MC, Nunes CDM, Ferreira ME, Grattapaglia D (2000) RAPD linkage mapping of the shell thickness locus in oil palm (Elaeis guineensis Jacq). Theor Appl Genet 100:63–70
Moretzsohn MC, Ferreira MA, Amaral ZPS, Coelho PJA, Grattapaglia D, et al. (2002) Genetic diversity of Brazilian oil palm (EoHBK) germplasm collected in the Amazon rainforest. Euphytica 124:35–45
Murphy DJ (2006) Molecular breeding strategies for the modification of lipid composition. In Vitro Cell Dev Biol 42(2):89–99
Murphy DJ (2007) Future prospects for oil palm in the 21mathrmst century: biological and related challenges. Eur J Lipid Sci Technol 109:1–11
Okwuagwu CO, Okolo EC (1992) Maternal inheritance of kernel size in the oil palm (Elaeis guineensis Jacq). Elaeis 4:72–73
Okwuagwu CO, Okolo EC (1994) Genetic control of polymorphism for kernel to fruit ratio in oil palm (Elaeis guineensis Jacq). Elaeis 6:75
Palmer LE, Rabinowicz PD, O’Shaughnessy AL, Balija VS, Nascimento LU, et al. (2003) Maize genome sequencing by methylation filtration. Science 302:2115–2118
Panchal G, Bridge PD (2005) Following basal stem rot in young oil palm plantings. Mycopathologia 159(1):123–127
Pantzaris TP (1997) Pocketbook of palm oil uses. Palm Oil Res Inst Malaysia, Kuala Lumpur
Parveez GKA (2003) Novel products from transgenic oil palm. AgBiotechNet 5 113:1–8
Pevsner J (2003) Bioinformatics and Functional Genomics. Hoboken, New Jersey: John Wiley and Sons Inc
Piffanelli P, Noa-Carrazana JC, Clement D, Ciampi J, Vilarinhos A, et al. (2002) A Platform of genomic resources to study organization and evolution of tropical crop species. SO4–3. (abstracts) Plant, Animal, Microbial Genome Conf X:58
Pilotti CA, Sanderson FR, Aitken EAB (2003) Genetic structure of a population of Ganoderma boninense on oil palm. Plant Pathol 52(4):455–463
Poole R, Barker G, Wilson ID, Coghill JA, Edwards KJ (2007) Measuring global gene expression in polyploidy; a cautionary note from allohexaploid wheat. Funct Integr Genomics 7(3): 207–219
Price Z, Dumortier F, MacDonald DW, Mayes S (2002) Characterization of copia-like retrotransposons in oil palm (Elaeis guineensis Jacq). Theor Appl Genet 104:860–867
Price Z, Schulman A, Mayes S (2004) Development of new marker system: oil plam. Plant Genet Resources: Charact and Util 1(2/3):105–115
Purba AR, Noyer JL, Baudouin L, Perrier X, Hamon S, et al. (2000) A new aspect of genetic diversity of Indonesian oil palm (Elaies guineensis Jacq) revealed by isoenzyme and AFLP markers and its consequences for breeding. Theor Appl Genet 101:956–961
Purba A, Flori R, Baudouin L, Hamon S (2001) Prediction of oil palm (Elaeis guineensis Jacq) agronomic performances using the best linear unbiased predictor (BLUP). Theor Appl Genet 102(5):787–792
Rabinowicz PD (2003) Constructing gene-enriched plant genomic libraries using methylation filtration technology. Methods Mol Biol 236:21–36
Rafii MY, Rajanaidu N, Jalani BS, Zakri AH (2001) Genotype x environment interaction and stability analyses in oil palm (Elaeis guineensis Jacq) progenies over six locations. J Oil Palm Res 13(1):11–41
Rafii MY, Rajanaidu N, Jalani BS, Kushairi A (2002) Performance and heritability estimations on oil palm progenies tested in different environments. J Oil Palm Res 14(1):15–24
Rajanaidu N, Kushairi A, Rafii M, Din M, Maizura I, Jalani BS (2000) Oil palm breeding and genetic resources. pp 171–227. In: Basiron Y, Jalani BS, Chan KW (eds) Advances in Oil Palm Research. Malaysian Palm Oil Board, Kuala Lumpur
Rajinder S, Cheah SC, Madon M, Ooi LCL, Rahimah AR (2001) Genomic strategies for enhancing the value of the oil palm. Proc PIPOC Intl Palm Oil Congr:3–17
Rance KA, Mayes S, Price Z, Jack PL, Corley RHV (2001) Quantitative trait loci for yield components in oil palm (Elaeis guineensis Jacq). Theor Appl Genet 103(8):1302–1310
Rohde W (1996) Inverse sequence-tagged repeat (ISTR) analysis: a novel and universal PCRbased technique for genome analysis in the plant and animal kingdom J Genet Breeding 50:249–61
Rival A, Beule T, Barre P, Hamon S, Duval Y, et al. (1997) Comparative flow cytometric estimation of nuclear DNA content in oil palm (Elaeis guineensis Jacq) tissue cultures and seed derived plants. Plant Cell Rep 16:884–887
Rival A, Tregear J, Verdeil J-L, Richaud F, Beule T, et al. (1998a) Molecular search for mRNA and genomic markers of the oil palm “mantled” somaclonal variation. Acta Horticulturae 461:165–172
Rival A, Bertrand L, Beule T, Combes MC, Trouslot P, et al. (1998b) Suitability of RAPD analysis for the detection of somaclonal variants in oil palm (Elaeis guineensis Jacq). Plant Breed 117:73–76
Rival A, Jaligot E, Beule T, Verdeil JL, Tregear J (2000) DNA methylation and somaclonal variation in oil palm. Acta Horticulturae 530:447–454
Rival A, Tregear J, Jaligot E, Morcillo F, Aberlenc F, et al.(2001) Oil palm biotechnology: progress and prospects. OCL - Oleagineux, Corps Gras, Lipides 8(4):295–306
Rival A, Tregear J, Jaligot E, Morcillo F, Aberlenc F, et al. (2003) Biotechnology of the oil palm (Elaeis guineensis Jacq). In: Singh RP, Jaiwal PW (eds) Plant genetic engineering. - Houston : Sci Tech Publishing. p 261–318
Rohani O, Zamzuri I, Tarmizi A H (2003) Oil palm cloning: MPOB protocol. MPOB Technology Malaysian Palm Oil Board (MPOB), Kuala Lumpur, Malaysia, 26, ii + 20
Rosenquist EA (1985) The genetic base of oil palm breeding populations. Proc Palm Oil Res Inst Malaysia 10:10–27
Salvi S, Tuberosa R (2005) To clones or not to clone plant QTLs: present and future challenges. Trends Plant Sci 10(6):297–304
Sambanthamurthi R, Sundram K, Tan YA (2000) Chemistry and biochemistry of palm oil. Progr Lipid Res 39:507–558
Sambrooke J, Russell DW (2000) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Princetown. ISBN-13-9780879695774
Sanderson FR (2005) An insight into spore dispersal of Ganoderma boninense on oil palm. Mycopathologia 159(1):139–141
SanMiguel P, Bennetzen JL (1998) Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotranposons. Ann Botany 82 (suppl A):37–44
Schulman AH, Kalendar R (2005) A movable feast: Diverse retrotransposons and their contribution to barley genome dynamics. Cytogenetic Genome Res 110(1–4):598–605
Shah FH, Rashid O, Simons AJ, Dunsdon A (1994) The utility of RAPD markers for the determination of genetic variation in oil palm (Elaeis guineensis). Theor Appl Genet 89:713–718
Shah FH, Cha TS (2000) A mesocarp-and species-specific cDNA clone from oil palm encodes for sesquiterpene synthase. Plant Sci 154(2):153–160
Singh R, Lessard PA, Guan TS, Panandam JM, Sinskey A, et al. (2003) Preliminary attempts at the construction of large insert DNA libraries for oil palm (Elaeis guineensis Jacq). J Oil Palm Res 15(1):12–20
Siti Nor AA, Sambanthamurthi R, Parveez GKA (2001) Genetic modification of oil palm for producing novel oils. Proc PIPOC Intl Palm Oil Congr:18–30
Sniady V, Becker D, Herrán A, Ritter E, Rohde W(2003) A rapid way of physical mapping in oil palm. www.tropentag.de/2003/proceedings/node255.html
Soh AC (1999) Breeding plans and selection methods in oil palm. p 65–95 In: Rajanaidu N, Jalani BS (eds) Proc Symp “The Science of Oil Palm Breeding”, Palm Oil Res Inst Malaysia, Kuala Lumpur
Soh AC, Tan ST (1983) Estimation of genetic variance, variance and combining ability in oil palm breeding. In: Yap TC, Graham KM (eds) Proc 4mathrmth Int SABRAO Congr Crop Improvement Res. p 379–388
Soh AC, Wong G, Tan CC, Chew PS, Hor TY, et al. (2001) Recent advances towards commercial production of elite oil palm clones. Proc PIPOC Intl Palm Oil Congr:33–44
Soh AC, Wong G, Hor TY, Tan CC, Chew PS (2003a) Oil palm genetic improvement. Plant Breed Rev 22:165–219
Soh AC, Gan HH, Wong G, Hor TY, Tan CC (2003b) Estimates of within family genetic variability for clonal selection in oil palm. Euphytica 133:147–163
Sparnaaij LD (1969) Oil palm (Elaeis guineensis Jacq). In: Outlines of perennial crop breeding in the tropics. Misc Papers Landbouwhogesschool No 4 Wageningen, Veenam, Wageningen pp 339–387
Sundram K, Sambanthamurthi R, Tan Y-A (2003) Palm fruit chemistry and nutrition. Asia Pacific J Clin Nutr 12:355–362
Susanto A, Sudharto PS, Purba PY (2005) Enhancing biological control of basal stem rot disease (Ganoderma boninense) in oil palm plantations. Mycopathologia 159(1):153–157
Syed Alwee SSR (2001) Genes controlling flowering: possible roles in oil palm floral abnormality. Oil Palm Bull 43:1–13
Syed Alwee S, van der Linden CG, van der Schoot J, de Folter S, Angenent GC, et al. (2006) Characterization of oil palm MADS box genes in relation to the mantled flower abnormality. Plant Cell, Tissue Organ Cult 85:331–344
Tao Q, Chang YL, Wang J, Chen H, Islam-Faridi MN, et al. (2001) Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis. Genetics 158:1711–1724
Tarmizi AH, Norjihan MA, Zaiton R (2004) Multiplication of oil palm suspension cultures in a bench-top (2-litre) bioreactor. J Oil Palm Res 16(2):44–49
Te-chato S, Hilae A, Yeedum I (2002) Improved callus induction and embryogenic callus formation from cultured young leaves of oil palm seedling. Thai J Agric Sci 35(4):407–413
Texeira JB, Sondahl MR, Nakamura T, Kirby EG (1995) Establishment of oil palm cell suspensions and plant regeneration. Plant Cell Tissue Organ Cult 40(2):105–111
Thomas CA (1971) The genetic organization of chromosomes. Ann Rev Genetics 5:237–256
Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, et al. (2003) Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res 13:524–530
Toruan-Mathius N, Bangun SII, Bintang M (2001) Analysis abnormalities of oil palm (Elaeis guineensis Jacq) from tissue culture by random amplified polymorphic DNA (RAPD). Menara Perkebunan 69(2):58–70
Tuberosa R, Salvi S (2006) Genomics approaches to improve drought tolerance in crops. Trends Plant Sci 11:405–412
Turner A, Beales J, Faure S, Dunford RP, Laurie DA (2005) The pseudo-response regulator, Ppd-H1 provides adaptation to photoperiod in barley. Science 310:1031–1034
US FDA (2006) Questions and answers about Trans fat nutrition labeling. http;//www.cfsan.fda.gov/∼dms/qatrans2.html#s3q1
Utomo C, Werner S, Neipold F, Deising HB (2005) Identification of Ganoderma, the causal agent of basal stem rot disease in oil palm using a molecular method. Mycopathologia 159(1):159–170
Vicient CM, Kalendar R, Schulman AH (2005) Variability, recombination and mosaic evolution of the barley BARE-1 retrotransposon. J Mol Evol 61(3):275–91
Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, et al. (2003) Enrichment of gene-coding sequences in maize by genome filtration. Science 302:2118–2120
Wonkyi-Appiah JB (1987) Genetic control of fertility in the oil palm (Elaeis guineensis Jacq). Euphytica 36:505–511
Woo S-S, Jiang J, Gill BS, Paterson AH, Wing RA (1994) Construction and characterisation of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res 22:4922–4931
Yamazaki M, Tsugawa H, Miyao A, Yano M, Wu J, et al. (2001) The rice retrotransposon Tos17, prefers low-copy marker sequence as a target. Mol Genetics Genomics 265:336–344
Yan L, Loukoianov A, Tranquilli G, Helguera M, Fahima T, et al. (2003) Positional cloning of the wheat vernalization gene VRN1. Proc Natl Acad Sci USA 100(10):6263–6268
Yan L, Loukolanov A, Blechi A, Tranquilli G, Ramakrishna W, et al. (2004) The wheat VRN2 gene is a flowering repressor downregulated by vernalization. Science 303:1640–1644
Zubaidah R, Siti Nor AA (2003) Development of a transient promoter assay system for oil palm. J Oil Palm Res 15(2):62–69
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2008 Springer Science+Business Media, LLC
About this chapter
Cite this chapter
Mayes, S., Hafeez, F., Price, Z., MacDonald, D., Billotte, N., Roberts, J. (2008). Molecular Research in Oil Palm, the Key Oil Crop for the Future. In: Moore, P.H., Ming, R. (eds) Genomics of Tropical Crop Plants. Plant Genetics and Genomics: Crops and Models, vol 1. Springer, New York, NY. https://doi.org/10.1007/978-0-387-71219-2_15
Download citation
DOI: https://doi.org/10.1007/978-0-387-71219-2_15
Publisher Name: Springer, New York, NY
Print ISBN: 978-0-387-71218-5
Online ISBN: 978-0-387-71219-2
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)