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Road map of the phyla Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes

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Abstract

This revised road map updates previous outlines of Garrity and Holt (2001) and Garrity et al. (2005) with the description of additional taxa and new phylogenetic analyses. While the outline/road map seeks to be complete for all taxa validated prior to July 1, 2006, some taxa described after that date are included.

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References

  • An, D.S., H.G. Lee, W.T. Im, Q.M. Liu and S.T. Lee. 2007. Segetibacter koreensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes, isolated from the soil of a ginseng field in South Korea. Int. J. Syst. Evol. Microbiol. 57: 1828–1833.

    Article  PubMed  CAS  Google Scholar 

  • Asker, D., T. Beppu and K. Ueda. 2007. Zeaxanthinibacter enoshimensis gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae, isolated from seawater off Enoshima Island, Japan. Int. J. Syst. Evol. Microbiol. 57: 837–843.

    Article  PubMed  CAS  Google Scholar 

  • Asker, D., T. Beppu and K. Ueda. 2008. Nubsella zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Sphingobacteriaceae isolated from freshwater. Int. J. Syst. Evol. Microbiol. 58: 601–606.

    Article  PubMed  CAS  Google Scholar 

  • Bae, S.S., K.K. Kwon, S.H. Yang, H.S. Lee, S.J. Kim and J.H. Lee. 2007. Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome. Int. J. Syst. Evol. Microbiol. 57: 1050–1054.

    Article  PubMed  CAS  Google Scholar 

  • Bermudes, D., D. Chase and L. Margulis. 1988. Morphology as a basis for taxonomy of large spirochetes symbiotic in wood-eating cockroaches and termites: Pillotina gen. nov., nom. rev., Pillotina calotermitidis sp. nov., nom. rev., Diplocalyx gen. nov., nom. rev., Diplocalyx calotermitidis sp. nov., nom. rev., Hollandina gen. nov., nom. rev., Hollandina pterotermitidis sp. nov., nom. rev., and Clevelandina reticulitermitidis gen. nov., sp. nov. Int. J. Syst. Bacteriol. 38: 291–302.

    Article  PubMed  CAS  Google Scholar 

  • Bernardet, J.F. and Y. Nakagawa. 2006. An introduction to the family Flavobacteriaceae. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, Proteobacteria: Delta and Epsilon Subclasses. Deeply Rooting Bacteria (edited by Dworkin, Falkow, Rosenberg, Schleifer and Stackebrandt). Springer, New York, pp. 455–480.

    Google Scholar 

  • Bowman, J.P., C. Mancuso, C.M. Nichols and J.A.E. Gibson. 2003. Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int. J. Syst. Evol. Microbiol. 53: 1343–1355.

    Article  PubMed  CAS  Google Scholar 

  • Brown, D.R., M. May, J.M. Bradbury, K.-E. Johansson and H. Neimark. 2010. Order I. Mycoplastamales. In Bergeys Manual of Systematic Bacteriology, 2nd edn, vol. 4, The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes (edited by Krieg, Staley, Brown, Hedlund, Paster, Ward, Ludwig and Whitman). Springer, New York, pp. 574–644.

    Google Scholar 

  • Cavalier-Smith, T. 2002. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int. J. Syst. Evol. Microbiol. 52: 7–76.

    PubMed  CAS  Google Scholar 

  • Chen, Y.G., X.L. Cui, Y.Q. Zhang, W.J. Li, Y.X. Wang, C.J. Kim, J.M. Lim, L.H. Xu and C.L. Jiang. 2008. Salinimicrobium terrae sp. nov., isolated from saline soil, and emended description of the genus Salinimicrobium. Int. J. Syst. Evol. Microbiol. 58: 2501–2504.

    Article  PubMed  CAS  Google Scholar 

  • Chua, P.K., J.E. Corkill, P.S. Hooi, S.C. Cheng, C. Winstanley and C.A. Hart. 2005. Isolation of Waddlia malaysiensis, a novel intracellular bacterium, from fruit bat (Eonycteris spelaea). Emerg. Infect. Dis. 11: 271–277.

    Article  PubMed  CAS  Google Scholar 

  • Cicarelli, F.D., T. Doerks, C. von Mering, C.J. Creevey, B. Snel and P. Bork. 2006. Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283–1287.

    Article  Google Scholar 

  • Cole, J.R., B. Chai, R.J. Farris, Q. Wang, A.S. Kulam-Syed-Mohideen, D.M. McGarrell, A.M. Bandela, E. Cardenas, G.M. Garrity and J.M. Tiedje. 2007. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35: D169–D172.

    Article  PubMed  CAS  Google Scholar 

  • De Vos, P., H.G. Truper and B.J. Tindall. 2005. Judicial Commission of the International Committee on Systematics of Prokaryotes Minutes. Xth International (IUMS) Congress of Bacteriology and Applied Microbiology. Int. J. Syst. Bacteriol. 55: 525–532.

    Google Scholar 

  • Everett, K.D., R.M. Bush and A.A. Andersen. 1999. Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms. Int. J. Syst. Bacteriol. 49: 415–440.

    Article  PubMed  CAS  Google Scholar 

  • Everett, K.D.E. and A.A. Andersen. 2001. Radical changes to chlamydial taxonomy are not necessary just yet: reply. Int. J. Syst. Evol. Microbiol. 51: 251–253.

    Google Scholar 

  • Garrity, G.M. and J.G. Holt. 2001. The road map to the manual. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 1, The Archaea and the Deeply Branching and Phototrophic Bacteria (edited by Boone, Castenholz and Garrity). Springer, New York, pp. 119–166.

    Chapter  Google Scholar 

  • Garrity, G.M., J.A. Bell and T. Lilburn. 2005. The revised road map to the manual. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2, The Proteobacteria, Part A, Introductory Essays (edited by Brenner, Krieg, Staley and Garrity). Springer, New York, pp. 159–206.

    Chapter  Google Scholar 

  • Griffiths, E. and R.S. Gupta. 2007. Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae. Microbiology 153: 2648–2654.

    Article  PubMed  CAS  Google Scholar 

  • Hardham, J.M., K.W. King, K. Dreier, J. Wong, C. Strietzel, R.R. Eversole, C. Sfintescu and R.T. Evans. 2008. Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients. Int. J. Syst. Evol. Microbiol. 58: 103–109.

    Article  PubMed  CAS  Google Scholar 

  • Heyrman, J., M. Rodriguez-Diaz, J. Devos, A. Felske, N.A. Logan and P. De Vos. 2005. Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 55: 111–117.

    Article  PubMed  CAS  Google Scholar 

  • Holmes, D.E., K.P. Nevin, T.L. Woodard, A.D. Peacock and D.R. Lovley. 2007. Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell. Int. J. Syst. Evol. Microbiol. 57: 701–707.

    Article  PubMed  CAS  Google Scholar 

  • Hosoya, S., V. Arunpairojana, C. Suwannachart, A. Kanjana-Opas and A. Yokota. 2006. Aureispira marina gen. nov., sp. nov., a gliding, arachidonic acid-containing bacterium isolated from the southern coastline of Thailand. Int. J. Syst. Evol. Microbiol. 56: 2931–2935.

    Article  PubMed  CAS  Google Scholar 

  • Hosoya, S., V. Arunpairojana, C. Suwannachart, A. Kanjana-Opas and A. Yokota. 2007. Aureispira maritima sp. nov., isolated from marine barnacle debris. Int. J. Syst. Evol. Microbiol. 57: 1948–1951.

    Article  PubMed  CAS  Google Scholar 

  • Khan, S.T., Y. Nakagawa and S. Harayama. 2007a. Sediminibacter furfurosus gen. nov., sp. nov. and Gilvibacter sediminis gen. nov., sp. nov., novel members of the family Flavobacteriaceae. Int. J. Syst. Evol. Microbiol. 57: 265–269.

    Article  PubMed  Google Scholar 

  • Khan, S.T., Y. Nakagawa and S. Harayama. 2007b. Sediminitomix flava gen. nov., sp. nov., of the phylum Bacteroidetes, isolated from marine sediment. Int. J. Syst. Evol. Microbiol. 57: 1689–1693.

    Article  PubMed  Google Scholar 

  • Khan, S.T., Y. Nakagawa and S. Harayama. 2007c. Galbibacter mesophilus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae. Int. J. Syst. Evol. Microbiol. 57: 969–973.

    Article  PubMed  CAS  Google Scholar 

  • Kim, B.Y., H.Y. Weon, S.H. Yoo, S.B. Hong, S.W. Kwon, E. Stackebrandt and S.J. Go. 2007a. Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea. Int. J. Syst. Evol. Microbiol. 57: 538–541.

    Article  PubMed  CAS  Google Scholar 

  • Kim, J.H., K.Y. Kim, Y.T. Hahm, B.S. Kim, J. Chun and C.J. Cha. 2008a. Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. Int. J. Syst. Evol. Microbiol. 58: 139–143.

    Article  PubMed  CAS  Google Scholar 

  • Kim, M.K., J.R. Na, D.H. Cho, N.K. Soung and D.C. Yang. 2007b. Parapedobacter koreensis gen. nov., sp. nov. Int. J. Syst. Evol. Microbiol. 57: 1336–1341.

    Article  PubMed  CAS  Google Scholar 

  • Kim, M.K., Y.A. Kim, Y.J. Kim, N.K. Soung, T.H. Yi, S.Y. Kim and D.C. Yang. 2008b. Parapedobacter soli sp. nov., isolated from soil of a ginseng field. Int. J. Syst. Evol. Microbiol. 58: 337–340.

    Article  PubMed  CAS  Google Scholar 

  • Kulichevskaya, I.S., O.I. Baulina, P.L. Bodelier, W.I. Rijpstra, J.S. Damste and S.N. Dedysh. 2009. Zavarzinella formosa gen. nov., sp. nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog. Int. J. Syst. Evol. Microbiol. 59: 357–364.

    Article  PubMed  CAS  Google Scholar 

  • Kuo, C.C. and R.S. Stephens. 2010. Family I. Chlamydiaceae. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 4, The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes (edited by Krieg, Staley, Brown, ­Hedlund, Paster, Ward, Ludwig and Whitman). Springer, New York, p. 845.

    Google Scholar 

  • Labeda, D.P. 1997. International Committee on Systematic Bacteriology, VIIth International Congress of Microbiology and Applied ­Bacteriology Minutes. Int. J. Syst. Bacteriol. 47: 597–600.

    Article  Google Scholar 

  • Lee, K.C., R.I. Webb, P.H. Janssen, P. Sangwan, T. Romeo, J.T. Staley and J.A. Fuerst. 2009. Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiol. 9: 5.

    Article  PubMed  Google Scholar 

  • Lee, S.D. 2007. Tamlana crocina gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae, isolated from beach sediment in Korea. Int. J. Syst. Evol. Microbiol. 57: 764–769.

    Article  PubMed  CAS  Google Scholar 

  • Lim, J.M., C.O. Jeon, S.S. Lee, D.J. Park, L.H. Xu, C.L. Jiang and C.J. Kim. 2008. Reclassification of Salegentibacter catena Ying et al. 2007 as Salinimicrobium catena gen. nov., comb. nov. and description of Salinimicrobium xinjiangense sp. nov., a halophilic bacterium isolated from Xinjiang province in China. Int. J. Syst. Evol. Microbiol. 58: 438–442.

    Article  PubMed  CAS  Google Scholar 

  • Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A.W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode and K.H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32: 1363–1371.

    Article  PubMed  CAS  Google Scholar 

  • Ludwig, W. and H.P. Klenk. 2005. Overview: a phylogenetic backbone and taxonomic framework for procaryotic systematics. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2, The Proteobacteria, Part A, Introductory Essays (edited by Brenner, Krieg, Staley and Garrity). Springer, New York, pp. 49–65.

    Chapter  Google Scholar 

  • Ludwig, W. and K.H. Schleifer. 2005. Molecular phylogeny of bacteria based on comparative sequence analysis of conserved genes. In Microbial Phylogeny and Evolution, Concepts and Controversies (edited by Sapp). Oxford University Press, New York, pp. 70–98.

    Google Scholar 

  • Morotomi, M., F. Nagai and H. Sakon. 2007. Genus Megamonas should be placed in the lineage of Firmicutes; Clostridia; Clostridiales; ‘Acidaminococcaceae’; Megamonas. Int. J. Syst. Evol. Microbiol. 57: 1673–1674.

    Article  PubMed  Google Scholar 

  • Morotomi, M., F. Nagai, H. Sakon and R. Tanaka. 2008. Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 58: 2716–2720.

    Article  PubMed  CAS  Google Scholar 

  • Murray, R.G. and E. Stackebrandt. 1995. Taxonomic note: implementation of the provisional status Candidatus for incompletely described procaryotes. Int. J. Syst. Bacteriol. 45: 186–187.

    Article  PubMed  CAS  Google Scholar 

  • Nedashkovskaya, O.I., S.B. Kim, D.S. Shin, I.A. Beleneva and V.V. Mikhailov. 2007a. Fulvivirga kasyanovii gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from seawater in a mussel farm. Int. J. Syst. Evol. Microbiol. 57: 1046–1049.

    Article  PubMed  CAS  Google Scholar 

  • Nedashkovskaya, O.I., M. Vancanneyt, S.B. Kim, B. Hoste and K.S. Bae. 2007b. Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter. Int. J. Syst. Evol. Microbiol. 57: 2147–2150.

    Article  PubMed  CAS  Google Scholar 

  • Ntougias, S., C. Fasseas and G.I. Zervakis. 2007. Olivibacter sitiensis gen. nov., sp. nov., isolated from alkaline olive-oil mill wastes in the region of Sitia, Crete. Int. J. Syst. Evol. Microbiol. 57: 398–404.

    Article  PubMed  CAS  Google Scholar 

  • Ochiai, S., Y. Adachi and K. Mori. 1997. Unification of the genera Serpulina and Brachyspira, and proposals of Brachyspira hyodysenteriae comb. nov., Brachyspira innocens comb. nov. and Brachyspira pilosicoli comb. nov. Microbiol. Immunol. 41: 445–452.

    PubMed  CAS  Google Scholar 

  • Pankratov, T.A., B.J. Tindall, W. Liesack and S.N. Dedysh. 2007. Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog. Int. J. Syst. Evol. Microbiol. 57: 2349–2354.

    Article  PubMed  CAS  Google Scholar 

  • Paster, B.J., D.A. Pelletier, F.E. Dewhirst, W.G. Weisburg, V. Fussing,L.K. Poulsen, S. Dannenberg and I. Schroeder. 1996. Phylogenetic position of the spirochetal genus Cristispira. Appl. Environ. ­Microbiol. 62: 942–946.

    PubMed  CAS  Google Scholar 

  • Pilhofer, M., K. Rappl, C. Eckl, A.P. Bauer, W. Ludwig, K.H. Schleifer and G. Petroni. 2008. Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes. J. Bacteriol. 190: 3192–3202.

    Article  PubMed  CAS  Google Scholar 

  • Pruesse, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies and F.O. Glöckner. 2007. SILVA: a comprehensive online resource for quality checked and aligned rRNA sequence data compatible with ARB. Nucleic Acids Res. 35: 7188–7196.

    Article  PubMed  CAS  Google Scholar 

  • Qin, Q.L., D.L. Zhao, J. Wang, X.L. Chen, H.Y. Dang, T.G. Li,Y.Z. Zhang and P.J. Gao. 2007. Wangia profunda gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from southern Okinawa Trough deep-sea sediment. FEMS Microbiol. Lett. 271: 53–58.

    Article  PubMed  CAS  Google Scholar 

  • Qu, J.H. and H.L. Yuan. 2008. Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir. Int. J. Syst. Evol. Microbiol. 58: 2191–2194.

    Article  PubMed  CAS  Google Scholar 

  • Quan, Z.X., Y.P. Xiao, S.W. Roh, Y.D. Nam, H.W. Chang, K.S. Shin, S.K. Rhee, Y.H. Park and J.W. Bae. 2008. Joostella marina gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the East Sea. Int. J. Syst. Evol. Microbiol. 58: 1388–1392.

    Article  PubMed  CAS  Google Scholar 

  • Romanenko, L.A., M. Uchino, G.M. Frolova and V.V. Mikhailov. 2007. Marixanthomonas ophiurae gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a deep-sea brittle star. Int. J. Syst. Evol. Microbiol. 57: 457–462.

    Article  PubMed  CAS  Google Scholar 

  • Sakamoto, M. and Y. Benno. 2006. Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov. Int. J. Syst. Evol. Microbiol. 56: 1599–1605.

    Article  PubMed  CAS  Google Scholar 

  • Sakamoto, M., P.T. Lan and Y. Benno. 2007. Barnesiella viscericola gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from chicken caecum. Int. J. Syst. Evol. Microbiol. 57: 342–346.

    Article  PubMed  CAS  Google Scholar 

  • Schachter, J., R.S. Stephens, P. Timms, C. Kuo, P.M. Bavoil, S. ­Birkelund, J. Boman, H. Caldwell, L.A. Campbell, M. Chernesky, G. ­Christiansen, I.N. Clarke, C. Gaydos, J.T. Grayston, T. Hackstadt, R. Hsia, B. Kaltenboeck, M. Leinonnen, D. Ojcius, G. McClarty, J. Orfila, R. Peeling, M. Puolakkainen, T.C. Quinn, R.G. Rank, J. Raulston, G.L. ­Ridgeway, P. Saikku, W.E. Stamm, D.T. Taylor-Robinson, S.P. Wang and P.B. Wyrick. 2001. Radical changes to chlamydial taxonomy are not necessary just yet. Int. J. Syst. Evol. Microbiol. 51: 249; author reply 251–253.

    Google Scholar 

  • Shah, H.N. and M.D. Collins. 1988. Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a new genus, Porphyromonas. Int. J. Syst. Bacteriol. 38: 128–131.

    Article  CAS  Google Scholar 

  • Shah, H.N. and D.M. Collins. 1990. Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int. J. Syst. Bacteriol. 40: 205–208.

    Article  PubMed  CAS  Google Scholar 

  • Srisukchayakul, P., C. Suwanachart, Y. Sangnoi, A. Kanjana-Opas, S. Hosoya, A. Yokota and V. Arunpairojana. 2007. Rapidithrix thailandica gen. nov., sp. nov., a marine gliding bacterium isolated from samples collected from the Andaman sea, along the southern coastline of Thailand. Int. J. Syst. Evol. Microbiol. 57: 2275–2279.

    Article  PubMed  CAS  Google Scholar 

  • Stamatakis, A.P., T. Ludwig and H. Meier. 2005. RAxML-II: a program for sequential, parallel & distributed inference of large phylogenetic trees. Concurrency Comput. Pract. Exp. 17: 1705–1723.

    Article  Google Scholar 

  • Stoecker, K., B. Bendinger, B. Schoning, P.H. Nielsen, J.L. Nielsen, C. Baranyi, E.R. Toenshoff, H. Daims and M. Wagner. 2006. Cohn’s Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase. Proc. Natl. Acad. Sci. U.S.A. 103: 2363–2367.

    Article  PubMed  CAS  Google Scholar 

  • Takeda, M., A. Yoneya, Y. Miyazaki, K. Kondo, H. Makita, M. Kondoh, I. Suzuki and J. Koizumi. 2008. Prosthecobacter fluviatilis sp. nov., which lacks the bacterial tubulin btubA and btubB genes. Int. J. Syst. Evol. Microbiol. 58: 1561–1565.

    Article  PubMed  CAS  Google Scholar 

  • Ten, L.N., O.M Liu, W.T. Im, Z. Aslam and S.T. Lee. 2006. Sphingobacterium composti sp. nov., a novel DNase-producing bacterium isolated from compost. J. Microbiol. Biotechnol. 16: 1728–1733.

    CAS  Google Scholar 

  • Ten, L.N., Q.-M. Liu, W.-T. Im, Z. Aslam and S.-T. Lee. 2007. List of new names and new combinations previously effectively, but not ­validly, published. Validation List no. 116 Int. J. Syst. Evol. Microbiol 57: 1372.

    Article  Google Scholar 

  • Urai, M., T. Aizawa, Y. Nakagawa, M. Nakajima and M. Sunairi. 2008. Mucilaginibacter kameinonensis sp., nov., isolated from garden soil. Int. J. Syst. Evol. Microbiol. 58: 2046–2050.

    Article  PubMed  CAS  Google Scholar 

  • Urios, L., H. Agogue, F. Lesongeur, E. Stackebrandt and P. Lebaron. 2006. Balneola vulgaris gen. nov., sp. nov., a member of the phylum Bacteroidetes from the north-western Mediterranean Sea. Int. J. Syst. Evol. Microbiol. 56: 1883–1887.

    Article  PubMed  CAS  Google Scholar 

  • Urios, L., L. Intertaglia, F. Lesongeur and P. Lebaron. 2008. Balneola alkaliphila sp. nov., a marine bacterium isolated from the Mediterranean Sea. Int. J. Syst. Evol. Microbiol. 58: 1288–1291.

    Article  PubMed  CAS  Google Scholar 

  • Vaz-Moreira, I., M.F. Nobre, O.C. Nunes and C.M. Manaia. 2007. ­Pseudosphingobacterium domesticum gen. nov., sp. nov., isolated from home-made compost. Int. J. Syst. Evol. Microbiol. 57: 1535–1538.

    Article  PubMed  CAS  Google Scholar 

  • Wagner, M. and M. Horn. 2006. The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr. Opin. Biotechnol. 17: 241–249.

    Article  PubMed  CAS  Google Scholar 

  • Wang, L., L.N. Ten, H.G. Lee, W.T. Im and S.T. Lee. 2008. Olivibacter soli sp. nov., Olivibacter ginsengisoli sp. nov. and Olivibacter terrae sp. nov., from soil of a ginseng field and compost in South Korea. Int. J. Syst. Evol. Microbiol. 58: 1123–1127.

    Article  PubMed  CAS  Google Scholar 

  • Weon, H.Y., B.Y. Kim, S.H. Yoo, S.Y. Lee, S.W. Kwon, S.J. Go and E. Stackebrandt. 2006. Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. Int. J. Syst. Evol. Microbiol. 56: 1777–1782.

    Article  PubMed  CAS  Google Scholar 

  • Weon, H.Y., B.Y. Kim, J.H. Joa, S.W. Kwon, W.G. Kim and B.S. Koo. 2008a. Niabella soli sp. nov., isolated from soil from Jeju Island, Korea. Int. J. Syst. Evol. Microbiol. 58: 467–469.

    Article  PubMed  CAS  Google Scholar 

  • Weon, H.Y., H.J. Noh, J.A. Son, H.B. Jang, B.Y. Kim, S.W. Kwon and E. Stackebrandt. 2008b. Rudanella lutea gen. nov., sp. nov., isolated from an air sample in Korea. Int. J. Syst. Evol. Microbiol. 58: 474–478.

    Article  PubMed  CAS  Google Scholar 

  • Willems, A. and M.D. Collins. 1995. 16S ribosomal RNA gene similarities indicate that Hallella seregens (Moore and Moore) and Mitsuokella dentalis (Haapasalo et al.) are genealogically highly related and are members of the genus Prevotella: emended description of the genus Prevotella (Shah and Collins) and description of Prevotella dentalis comb. nov. Int. J. Syst. Bacteriol. 45: 832–836.

    Article  PubMed  CAS  Google Scholar 

  • Yang, S.J., Y.J. Choo and J.C. Cho. 2007. Lutimonas vermicola gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine polychaete Periserrula leucophryna. Int. J. Syst. Evol. Microbiol. 57: 1679–1684.

    Article  PubMed  CAS  Google Scholar 

  • Yoo, S.H., H.Y. Weon, H.B. Jang, B.Y. Kim, S.W. Kwon, S.J. Go and E. Stackebrandt. 2007. Sphingobacterium composti sp. nov., isolated from cotton-waste composts. Int. J. Syst. Evol. Microbiol. 57: 1590–1593.

    Article  PubMed  Google Scholar 

  • Yoon, J., S. Ishikawa, H. Kasai and A. Yokota. 2007a. Perexilibacter aurantiacus gen. nov., sp. nov., a novel member of the family ‘Flammeovirgaceae’ isolated from sediment. Int. J. Syst. Evol. Microbiol. 57: 964–968.

    Article  PubMed  CAS  Google Scholar 

  • Yoon, J., S. Ishikawa, H. Kasai and A. Yokota. 2007b. Persicitalea jodogahamensis gen. nov., sp. nov., a marine bacterium of the family ‘Flexibacteraceae’, isolated from seawater in Japan. Int. J. Syst. Evol. Microbiol. 57: 1014–1017.

    Article  PubMed  CAS  Google Scholar 

  • Yoon, J., Y. Matsuo, K. Adachi, M. Nozawa, S. Matsuda, H. Kasai and A. Yokota. 2008a. Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum ‘Verrucomicrobia’, and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int. J. Syst. Evol. Microbiol. 58: 998–1007.

    Article  PubMed  Google Scholar 

  • Yoon, J., Y. Matsuo, H. Kasai and A. Yokota. 2008b. Limibacter armeniacum gen. nov., sp. nov., a novel representative of the family ‘Flammeovirgaceae’ isolated from marine sediment. Int. J. Syst. Evol. Microbiol. 58: 982–986.

    Article  PubMed  Google Scholar 

  • Yoon, J., Y. Matsuo, A. Katsuta, J.H. Jang, S. Matsuda, K. Adachi, H. Kasai and A. Yokota. 2008c. Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum ‘Verrucomicrobia’. Int. J. Syst. Evol. Microbiol. 58: 2491–2500.

    Article  PubMed  CAS  Google Scholar 

  • Yoon, J.H., S.J. Kang, Y.T. Jung and T.K. Oh. 2008d. Aestuariicola saemankumensis gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from tidal flat sediment. Int. J. Syst. Evol. Microbiol. 58: 2126–2131.

    Article  PubMed  CAS  Google Scholar 

  • Yoon, M.H. and W.T. Im. 2007. Flavisolibacter ginsengiterrae gen. nov., sp. nov. and Flavisolibacter ginsengisoli sp. nov., isolated from ginseng ­cultivating soil. Int. J. Syst. Evol. Microbiol. 57: 1834–1839.

    Article  PubMed  CAS  Google Scholar 

  • Zchori-Fein, E., S.J. Perlman, S.E. Kelly, N. Katzir and M.S. Hunter. 2004. Characterization of a ‘Bacteroidetes’ symbiont in Encarsia wasps (Hymenoptera: Aphelinidae): proposal of ‘Candidatus Cardinium hertigii’. Int. J. Syst. Evol. Microbiol. 54: 961–968.

    Article  PubMed  CAS  Google Scholar 

  • Zhao, J.S., D. Manno and J. Hawari. 2009. Psychrilyobacter atlanticus gen. nov., sp. nov., a marine member of the phylum Fusobacteria that produces H2 and degrades nitramine explosives under low temperature conditions. Int. J. Syst. Evol. Microbiol. 59: 491–497.

    Article  PubMed  CAS  Google Scholar 

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  1. Lehrstuhl für Mikrobiologie, Technische Universität München, Am Hochanger 4, D-85350, Freising, Germany

    Wolfgang Ludwig

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  2. Jean Euzéby
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    William B. Whitman

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Ludwig, W., Euzéby, J., Whitman, W.B. (2010). Road map of the phyla Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes . In: Krieg, N.R., et al. Bergey’s Manual® of Systematic Bacteriology. Springer, New York, NY. https://doi.org/10.1007/978-0-387-68572-4_1

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