Skip to main content

Pandemic Preparedness and the Influenza Risk Assessment Tool (IRAT)

  • Chapter
  • First Online:

Part of the book series: Current Topics in Microbiology and Immunology ((CT MICROBIOLOGY,volume 385))

Abstract

Influenza infections have resulted in millions of deaths and untold millions of illnesses throughout history. Influenza vaccines are the cornerstone of influenza prevention and control. Recommendations are made by the World Health Organization (WHO) 6–9 months in advance of the influenza season regarding what changes, if any, should be made in the formulation of seasonal influenza vaccines. This allows time to manufacture, test, distribute, and administer vaccine prior to the beginning of the influenza season. At the same time experts also consider which viruses not currently circulating in the human population, but with pandemic potential, pose the greatest risk to public health. Experts may conclude that one or more of these viruses are of enough concern to warrant development of a high-growth reassortant candidate vaccine virus. Subsequently, national authorities may determine that a vaccine should be manufactured, tested in clinical trials, and even stockpiled in some circumstances. The Influenza Risk Assessment Tool (IRAT) was created in an effort to develop a standardized set of elements that could be applied for decision making when evaluating pre-pandemic viruses. The tool is a simple, additive model, based on multi-attribute decision analysis . The ultimate goal is to identify an appropriate candidate vaccine virus and prepare a human vaccine before the virus adapts to infect and efficiently transmit in susceptible human populations. This pre-pandemic preparation allows production of vaccine—a strategy that could save lives and mitigate illness during a pandemic.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Abbreviations

CDC:

Centers for Disease Control and Prevention

HPAI:

Highly pathogenic avian influenza

IRAT:

Influenza Risk Assessment Tool

RVF:

Rift Valley fever

SMEs:

Subject matter experts

WHO:

World Health Organization

References

  • Anyamba A, Chretien JP, Small J, Tucker CJ, Formenty PB, Richardson JH, Britch SC, Schnabel DC, Erickson RL, Linthicum KJ (2010a) Prediction of a Rift Valley fever outbreak. PNAS 106(3):955–959

    Google Scholar 

  • Anyamba A, Linthicum KJ, Small J, Britch SC, Pak E, de La Rocque S, Formenty P, Hightower AW, Breiman RF, Chretien JP, Tucker CJ, Schnabel D, Sang R, Haagsma K, Lathem M, Lewandowski HB, Magdi SO, Mohamed MA, Nguku PM, Reynes JM, Swanepoel R (2010b) Prediction, assessment of the Rift Valley fever activity in east and southern Africa 2006–2008 and possible vector control strategies. Am J Trop Med Hyg 83(Sup 2):43–51

    Google Scholar 

  • Briet OJT, Vounatsou P, Gunawardena DM, Galappaththy GNL, Amerasinghe PH (2008) Models for short term malaria prediction in Sri Lanka. http://www.malariajournal.com/content/7/1/76

  • Britch SC, Binepal YS, Ruder MG, Kariithi HM, Linthicum KJ, Anyamba A, Small JL, Tucker CJ, Ateya LO, Oriko AA, Gacheru S, Wilson WC (2013) Rift Valley fever risk map model and seroprevalence in selected wild ungulates and camels from Kenya. PLoS One 8(6):e66626

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Centers for Disease Control and Prevention (2010) Interim results: Influenza A (H1N1) 2009 monovalent vaccination coverage—United States, October—December 2009. MMWR Morb Mortal Wkly Rep 59(02):44–48

    Google Scholar 

  • Centers for Disease Control and Prevention (2009) Swine Influenza A (H1N1) infection in two children-Southern California, March-April 2009. MMWR Morb Mortal Wkly Rep 58(15):400–402

    Google Scholar 

  • Dawood FS, Juliano AD, Reed C, Meltzer MI, Shay KD, Cheng PY, Dandaranayake D, Breiman RF, Brooks WA, Buchy P, Feikin DR, Fowler KB, Gordon A, Hien NT, Horby P, Huang QS, Katz MA, Krishnan A, Lal R, Montgomery JM, Molabak K, Pebody R, Presanis AM, Razuri H, Steens A, Tinoco YO, Wallinga J, Yu H, Vong S, Bresee J, Widdowson MA (2012) Estimated global mortality associated with the first 12 months of 2009 pandemic influenza A H1N1 virus circulation: a modelling study. Lancet 12:651–653

    Article  Google Scholar 

  • Department of Health, Education and Welfare (1978) Interagency work group on pandemic influenza. A plan for pandemic influenza

    Google Scholar 

  • Dolan JG (2010) Multi-criteria clinical decision support: a primer on the use of multiple criteria decision making methods to promote evidence based, patient centered healthcare. Patient 4:229–248

    Article  Google Scholar 

  • Edwards W, Barron FH (1994) SMARTS and SMARTER: improved simple methods for multi-attribute utility measurement. Organ Behav Hum Decis Process 60:306–325

    Article  Google Scholar 

  • Gao R, Cao B, Hu Y, Feng Z, Wang D, Hu W, Chen J, Jie Z, Qiu H, Xu K, Xu X, Lu H, Zhu W, Gao Z, Xiang N, Shen Y, He Z, Gu Y, Zhang Z, Yang Y, Zhao X, Zhou L, Li X, Zou S, Zhang Y, Li X, Yang L, Guo J, Dong J, Li Q, Dong L, Zhu Y, Bai T, Wang S, Hao P, Yang W, Zhang Y, Han J, Yu H, Li D, Gao GF, Guizhen W, Wang Y, Yuan Z, Shu Y (2013) Human infection with a novel avian-origin influenza A (H7N9) virus. NEJM 368(20):1888–1897

    Article  PubMed  CAS  Google Scholar 

  • Garten RJ, Davis CT, Russell CA, Shu B, Lindstrom S, Balish A, Sessions WM, Xu X, Skepner E, Deyde V, Okomo-Adhiambo M, Gubareva L, Barnes J, Smith CB, Emery SL, Hillman MJ, Rivailler P, Smagala J, de Graff M, Burke DF, Fouchier RAM, Pappas C, Alpuche-Aranda CM, Lopez-Gatell H, Olivera H, Lopez I, Myers CA, Faix D, Blair PJ, Yu C, Keene KM, Dotson PD, Boxrud D, Sambol AR, Abid SH, St. George K, Bannerman T, Moore AL, Stringer DJ, Blevins P, Demmler-Harrison GJ, Ginsberg M, Kriner P, Waterman S, Smole S, Guevara HF, Belongia EA, Clark PA, Beatrice ST, Donis R, Katz J, Finelli L, Bridges CB, Shaw M, Jernigan DB, Uyeki TM, Smith DJ, Klimov AI, Cox NJ (2009) Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans. Science 325:197–201

    Google Scholar 

  • Glezen WP (1996) Emerging infections: Pandemic influenza. Epidemio Rev 18(1):64–76

    Article  CAS  Google Scholar 

  • Homeland Security Council (2005) National strategy for pandemic influenza. http://www.flu.gov/planning-preparedness/federal/pandemic-influenza.pdf

  • Hoshen MB, Morse AP (2004) A weather-driven model of malaria transmission. http://www.malariajournal.com/content/3/1/32

  • OIE World Organisation for Animal Health (2014) Update on highly pathogenic avian influenza in animals (type H5 and H7) http://www.oie.int/animal-health-in-the-world/update-on-avian-influenza/2014/

  • Iskander J, Strikas RA, Gensheimer KF, Cox NJ, Redd SC (2013) Pandemic influenza planning, United States, 1978–2008. EID 19(6):879–885

    Google Scholar 

  • Jernigan DB, Lindstrom SL, Johnson JR, Miller JD, Hoelscher M, Humes R, Shively R, Brammer L, Burke SA, Villanueva JM, Balish A, Uyeki T, Mustaquim D, Bishop A, Handsfield JH, Astles R, Xu X, Klimov AI, Cox NJ, Shaw MW (2011) Detecting 2009 pandemic influenza A(H1N1) virus infection: availability of diagnostic testing led to rapid pandemic response. CID 52(Suppl 1):S36–S43

    Article  Google Scholar 

  • Jhung MA, Swerdlow D, Olson SJ, Jernigan D, Biggerstaff M, Kamimoto L, Kniss K, Reed C, Fry A, Brammer L, Gindler J, Gregg WJ, Bresee J, Finelli L (2011) Epidemiology of 2009 pandemic influenza A (H1N1) in the United States. CID 52(Suppl 1):S13–S26

    Article  Google Scholar 

  • Kasowski EJ, Garten RJ, Bridges CB (2011) Influenza pandemic epidemiologic and virologic diversity: reminding ourselves of the possibilities. CID 52(Suppl 1):S44–S49

    Article  Google Scholar 

  • Metwally S (2008) Rift Valley fever. In; Brown C, Torres A (eds) Foreign animal diseases, 7th edn. USAHA, Boca Raton, pp 369–375

    Google Scholar 

  • Morans DM, Fauci AS (2007) The 1918 influenza pandemic: insights for the 21st century. JID 195:1018–1028

    Article  Google Scholar 

  • Parry J (2013) H7N9 avian flu infects humans for the first time. BMJ 346:f2151

    Article  PubMed  Google Scholar 

  • Phillips LD (1984) A theory of requisite decision models. Acta Psychologica 56:29–48

    Article  Google Scholar 

  • Schuchat A, Tappero J, Blandford J (2014) Global health and the US Centers for Disease Control and Prevention. Lancet (accepted for publication)

    Google Scholar 

  • Simonsen L, Clarke MJ, Schonberger LB, Arden NH, Cox NJ, Fududa K (1998) Pandemic versus epidemic influenza mortality: a pattern of changing age distribution. JID 178:53–60

    Article  PubMed  CAS  Google Scholar 

  • Sluijs JP, Craye M, Funtowicz S, Kloprogge P, Ravetz J, Risbey J (2005) Combining quantitative and qualitative measures of uncertainty in model-based environmental assessment: The NUSAP system. Risk Anal 25(2):481–492

    Article  PubMed  Google Scholar 

  • Swayne DE, Perdue ML (2005) Public health risk from avian influenza viruses. Av Dis 49:317–327

    Article  Google Scholar 

  • Swayne DE (ed) (2008) Avian influenza. Blackwell Publishing, Ames

    Google Scholar 

  • Tong S, Zhu X, Li Y, Shi M, Zhang J, Bourgeois M, Yang H, Chen X, Rescuenco S, Gomez J, Chen LM, Johnson A, Tao Y, Dreyfus C, Yu W, McBride R, Carney PJ, Bilbert AT, Chang J, Guo Z, Davis CT, Paulson JC, Stevens J, Rupprecht CE, Holmes EC, Wilson IA, Donis RO (2013) New world bats harbor diverse influenza a viruses. Plos Pathogens 9(10):e1003657

    Article  PubMed  PubMed Central  Google Scholar 

  • Tong S, Li Y, Rivailler P, Conrardy C, Castillo DAA, Chen LM, Recuenco S, Ellison JA, Davis CT, York IA, Turmelle AS, Moran D, Rogers S, Shi M, Tao Y, Weil MR, Tang K, Rowe LA, Sammons S, Xu X, Frace M, Lindblade KA, Cox NJ, Anderson LJ, Rupprecht CE, Donis RO (2012) A distinct lineage of influenza a virus from bats. www.pnas.org/cgi/doi/10.1073/pnas.11162000109

  • Trock SC, Burke SA, Cox NJ (2012) Development of an influenza virologic risk assessment tool. Av Dis 56:1058–1061

    Article  Google Scholar 

  • USDA, National Poultry Improvement Plan (2007) http://www.aphis.usda.gov/vs/nahss/poultry/ai/avian_influenza_surveillance_plan_062907.pdf

  • USDA, National Surveillance Plan for Swine Influenza Virus in Pigs. 14 Jul 2010. http://www.aphis.usda.gov/animal_health/animal_dis_spec/swine/downloads/appendix_a_national_surv_plan.pdf

  • Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaok Y (1992) Evolution and ecology of influenza a viruses. Microbiol Rev 56(1):152–179

    PubMed  CAS  PubMed Central  Google Scholar 

  • WHO/OIE/FAO H5N1 Evolution Working Group (2014) Revised and updated nomenclature for highly pathogenic avian influenza A (H5N1). Influenza Other Respir Viruses 8(3):384–388

    Article  Google Scholar 

  • World Health Organization (2014a) Human infection with influenza A(H7N) virus. http://who.int/influenza/human_animal_interface/influenza_h7n9/140225_H7N9RA_for_web_20140306FM.pdf?ua=1

  • World Health Organization (2014b) Influenza at the human-animal interface, monthly risk assessment summary. http://www.who.int/influenza/human_animal_interface/Influenza_Summary_IRA_HA_interface_5May14.pdf

  • World Health Organization (2013) Pandemic influenza risk management. http://www.who.int/influenza/preparedness/pandemic/GIP_PandemicInfluenzaRiskManagementInterimGuidance_Jun2013.pdf

  • Zimmer SM, Burke DS (2009) Historical perspective—emergence of influenza A (H1N1) viruses. NEJM 361(3):279–285

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nancy J. Cox .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this chapter

Cite this chapter

Cox, N.J., Trock, S.C., Burke, S.A. (2014). Pandemic Preparedness and the Influenza Risk Assessment Tool (IRAT). In: Compans, R., Oldstone, M. (eds) Influenza Pathogenesis and Control - Volume I. Current Topics in Microbiology and Immunology, vol 385. Springer, Cham. https://doi.org/10.1007/82_2014_419

Download citation

Publish with us

Policies and ethics