Abstract
Sleep is a complex behavior both in its manifestation and regulation, that is common to almost all animal species studied thus far. Sleep is not a unitary behavior and has many different aspects, each of which is tightly regulated and influenced by both genetic and environmental factors. Despite its essential role for performance, health, and well-being, genetic mechanisms underlying this complex behavior remain poorly understood. One important aspect of sleep concerns its homeostatic regulation, which ensures that levels of sleep need are kept within a range still allowing optimal functioning during wakefulness. Uncovering the genetic pathways underlying the homeostatic aspect of sleep is of particular importance because it could lead to insights concerning sleep’s still elusive function and is therefore a main focus of current sleep research. In this chapter, we first give a definition of sleep homeostasis and describe the molecular genetics techniques that are used to examine it. We then provide a conceptual discussion on the problem of assessing a sleep homeostatic phenotype in various animal models. We finally highlight some of the studies with a focus on clock genes and adenosine signaling molecules.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Achermann P, Borbely AA (2003) Mathematical models of sleep regulation. Front Biosci 8:s683–s693
Aeschbach D, Cajochen C, Landolt H, Borbely AA (1996) Homeostatic sleep regulation in habitual short sleepers and long sleepers. Am J Physiol 270:R41–R53
Aeschbach D, Matthews JR, Postolache TT, Jackson MA, Giesen HA, Wehr TA (1997) Dynamics of the human EEG during prolonged wakefulness: evidence for frequency-specific circadian and homeostatic influences. Neurosci Lett 239:121–124
Aeschbach D, Postolache TT, Sher L, Matthews JR, Jackson MA, Wehr TA (2001) Evidence from the waking electroencephalogram that short sleepers live under higher homeostatic sleep pressure than long sleepers. Neuroscience 102:493–502
Altshuler D, Daly MJ, Lander ES (2008) Genetic mapping in human disease. Science 322:881–888
Ambrosius U, Lietzenmaier S, Wehrle R, Wichniak A, Kalus S, Winkelmann J, Bettecken T, Holsboer F, Yassouridis A, Friess E (2008) Heritability of sleep electroencephalogram. Biol Psychiatry 64:344–348
Amici R, Cerri M, Ocampo-Garces A, Baracchi F, Dentico D, Jones CA, Luppi M, Perez E, Parmeggiani PL, Zamboni G (2008) Cold exposure and sleep in the rat: REM sleep homeostasis and body size. Sleep 31:708–715
Andretic R, Franken P, Tafti M (2008) Genetics of sleep. Annu Rev Genet 42:361–388
Andretic R, van Swinderen B, Greenspan RJ (2005) Dopaminergic modulation of arousal in Drosophila. Curr Biol 15(13):1165–1175
Antoch MP, Song EJ, Chang AM, Vitaterna MH, Zhao Y, Wilsbacher LD, Sangoram AM, King DP, Pinto LH, Takahashi JS (1997) Functional identification of the mouse circadian Clock gene by transgenic BAC rescue. Cell 89:655–667
Archer SN, Robilliard DL, Skene DJ, Smits M, Williams A, Arendt J, von Schantz M (2003) A length polymorphism in the circadian clock gene Per3 is linked to delayed sleep phase syndrome and extreme diurnal preference. Sleep 26:413–415
Ayroles JF, Carbone MA, Stone EA, Jordan KW, Lyman RF, Magwire MM, Rollmann SM, Duncan LH, Lawrence F, Anholt RR, Mackay TF (2009) Systems genetics of complex traits in Drosophila melanogaster. Nat Genet 41:299–307
Bachmann V, Klein C, Bodenmann S, Schafer N, Berger W, Brugger P, Landolt HP (2012) The BDNF Val66Met polymorphism modulates sleep intensity: EEG frequency- and state-specificity. Sleep 35:335–344
Basheer R, Strecker RE, Thakkar MM, McCarley RW (2004) Adenosine and sleep-wake regulation. Prog Neurobiol 73:379–396
Bass J, Takahashi JS (2010) Circadian integration of metabolism and energetics. Science 330:1349–1354
Belknap JK, Hitzemann R, Crabbe JC, Phillips TJ, Buck KJ, Williams RW (2001) QTL analysis and genomewide mutagenesis in mice: complementary genetic approaches to the dissection of complex traits. Behav Genet 31:5–15
Benington JH, Heller HC (1995) Restoration of brain energy metabolism as the function of sleep. Prog Neurobiol 45:347–360
Benington JH, Woudenberg MC, Heller HC (1994) REM-sleep propensity accumulates during 2-h REM-sleep deprivation in the rest period in rats. Neurosci Lett 180:76–80
Benito J, Zheng H, Ng FS, Hardin PE (2007) Transcriptional feedback loop regulation, function, and ontogeny in Drosophila. Cold Spring Harb Symp Quant Biol 72:437–444
Bixler E (2009) Sleep and society: an epidemiological perspective. Sleep Med 10(Suppl 1):S3–S6
Bjorness TE, Kelly CL, Gao T, Poffenberger V, Greene RW (2009) Control and function of the homeostatic sleep response by adenosine A1 receptors. J Neurosci 29:1267–1276
Bodenmann S, Xu S, Luhmann UF, Arand M, Berger W, Jung HH, Landolt HP (2009) Pharmacogenetics of modafinil after sleep loss: catechol-O-methyltransferase genotype modulates waking functions but not recovery sleep. Clin Pharmacol Ther 85:296–304
Borbely AA (1982) A two process model of sleep regulation. Hum Neurobiol 1:195–204
Borbely AA, Achermann P (1991) Ultradian dynamics of sleep after a single dose of benzodiazepine hypnotics. Eur J Pharmacol 195:11–18
Borbély AA, Tobler I, Hanagasioglu M (1984) Effect of sleep deprivation on sleep and EEG power spectra in the rat. Behav Brain Res 14(3):171–182
Bozek K, Relogio A, Kielbasa SM, Heine M, Dame C, Kramer A, Herzel H (2009) Regulation of clock-controlled genes in mammals. PLoS ONE 4:e4882
Brown RE, Basheer R, McKenna JT, Strecker RE, McCarley RW (2012) Control of sleep and wakefulness. Physiol Rev 92:1087–1187
Bushey D, Huber R, Tononi G, Cirelli C (2007) Drosophila Hyperkinetic mutants have reduced sleep and impaired memory. J Neurosci 27:5384–5393
Cannon WB (1915) Bodily changes in pain, hunger, fear and rage: an account of recent researches into the function of emotional excitement. Canon, New York
Chiang MC, Avedissian C, Barysheva M, Toga AW, McMahon KL, de Zubicaray GI, Wright MJ, Thompson PM (2009) Extending genetic linkage analysis to diffusion tensor images to map single gene effects on brain fiber architecture. Med Image Comput Comput Assist Interv 12:506–513
Cirelli C (2003) Searching for sleep mutants of Drosophila melanogaster. BioEssays 25:940–949
Cirelli C (2005) A molecular window on sleep: changes in gene expression between sleep and wakefulness. Neuroscientist 11:63–74
Cirelli C, Bushey D, Hill S, Huber R, Kreber R, Ganetzky B, Tononi G (2005) Reduced sleep in Drosophila Shaker mutants. Nature 434:1087–1092
Cirelli C, Faraguna U, Tononi G (2006) Changes in brain gene expression after long-term sleep deprivation. J Neurochem 98:1632–1645
Cirelli C, Gutierrez CM, Tononi G (2004) Extensive and divergent effects of sleep and wakefulness on brain gene expression. Neuron 41:35–43
Cirelli C, Tononi G (2000) Gene expression in the brain across the sleep-waking cycle. Brain Res 885:303–321
Clinton JM, Davis CJ, Zielinski MR, Jewett KA, Krueger JM (2011) Biochemical regulation of sleep and sleep biomarkers. J Clin Sleep Med 7:S38–S42
Curie T, Mongrain V, Dorsaz S, Mang GM, Emmenegger Y, Franken P (2013) Homeostatic and circadian contribution to EEG and molecular state variables of sleep regulation. Sleep 36(3):311–323
Daan S, Beersma DG, Borbely AA (1984) Timing of human sleep: recovery process gated by a circadian pacemaker. Am J Physiol 246:R161–R183
Darko DF, Miller JC, Gallen C, White J, Koziol J, Brown SJ, Hayduk R, Atkinson JH, Assmus J, Munnell DT, Naitoh P, McCutchan JA, Mitler MM (1995) Sleep electroencephalogram delta-frequency amplitude, night plasma levels of tumor necrosis factor alpha, and human immunodeficiency virus infection. Proc Natl Acad Sci U.S.A 92:12080–12084
Darvasi A (1998) Experimental strategies for the genetic dissection of complex traits in animal models. Nat Genet 18:19–24
Davis CJ, Bohnet SG, Meyerson JM, Krueger JM (2007) Sleep loss changes microRNA levels in the brain: a possible mechanism for state-dependent translational regulation. Neurosci Lett 422:68–73
De Gennaro L, Marzano C, Fratello F, Moroni F, Pellicciari MC, Ferlazzo F, Costa S, Couyoumdjian A, Curcio G, Sforza E, Malafosse A, Finelli LA, Pasqualetti P, Ferrara M, Bertini M, Rossini PM (2008) The electroencephalographic fingerprint of sleep is genetically determined: a twin study. Ann Neurol 64:455–460
Deboer T (2009) Sleep and sleep homeostasis in constant darkness in the rat. J Sleep Res 18:357–364
Deboer T, Fontana A, Tobler I (2002) Tumor necrosis factor (TNF) ligand and TNF receptor deficiency affects sleep and the sleep EEG. J Neurophysiol 88(2):839–846
DeBruyne JP, Weaver DR, Reppert SM (2007) CLOCK and NPAS2 have overlapping roles in the suprachiasmatic circadian clock. Nat Neurosci 10:543–545
Delaney SM, Geiger JD (1996) Brain regional levels of adenosine and adenosine nucleotides in rats killed by high-energy focused microwave irradiation. J Neurosci Methods 64:151–156
Dijk DJ, Archer SN (2009) PERIOD3, circadian phenotypes, and sleep homeostasis. Sleep Med Rev 14:151–160
Dijk DJ, Beersma DG, Daan S (1987) EEG power density during nap sleep: reflection of an hourglass measuring the duration of prior wakefulness. J Biol Rhythms 2:207–219
Dijk DJ, Czeisler CA (1995) Contribution of the circadian pacemaker and the sleep homeostat to sleep propensity, sleep structure, electroencephalographic slow waves, and sleep spindle activity in humans. J Neurosci 15:3526–3538
Dijk DJ, Franken P (2005) Interaction of sleep homeostasis and circadian rhythmicity: dependent or independent systems? In: Kryger MH, Roth T, Dement W (eds) Principles and practice of sleep medecine. Saunders/Elsevier, Philadelphia, pp 418–434
Douglas CL, Vyazovskiy V, Southard T, Chiu SY, Messing A, Tononi G, Cirelli C (2007) Sleep in Kcna2 knockout mice. BMC Biol 5:42
Dudley CA, Erbel-Sieler C, Estill SJ, Reick M, Franken P, Pitts S, McKnight SL (2003) Altered patterns of sleep and behavioral adaptability in NPAS2-deficient mice. Science 301:379–383
Easton A, Meerlo P, Bergmann B, Turek FW (2004) The suprachiasmatic nucleus regulates sleep timing and amount in mice. Sleep 27:1307–1318
Egan MF, Kojima M, Callicott JH, Goldberg TE, Kolachana BS, Bertolino A, Zaitsev E, Gold B, Goldman D, Dean M, Lu B, Weinberger DR (2003) The BDNF val66met polymorphism affects activity-dependent secretion of BDNF and human memory and hippocampal function. Cell 112:257–269
Endo T, Roth C, Landolt HP, Werth E, Aeschbach D, Achermann P, Borbely AA (1998) Selective REM sleep deprivation in humans: effects on sleep and sleep EEG. Am J Physiol 274:R1186–R1194
Endo T, Schwierin B, Borbely AA, Tobler I (1997) Selective and total sleep deprivation: effect on the sleep EEG in the rat. Psychiatry Res 66:97–110
Fang J, Wang Y, Krueger JM (1997) Mice lacking the TNF 55 kDa receptor fail to sleep more after TNFalpha treatment. J Neurosci 17(15):5949–5955
Faraguna U, Vyazovskiy VV, Nelson AB, Tononi G, Cirelli C (2008) A causal role for brain-derived neurotrophic factor in the homeostatic regulation of sleep. J Neurosci 28:4088–4095
Fedele DE, Gouder N, Guttinger M, Gabernet L, Scheurer L, Rulicke T, Crestani F, Boison D (2005) Astrogliosis in epilepsy leads to overexpression of adenosine kinase, resulting in seizure aggravation. Brain 128:2383–2395
Flint J, Mott R (2001) Finding the molecular basis of quantitative traits: successes and pitfalls. Nat Rev Genet 2:437–445
Foltenyi K, Greenspan RJ, Newport JW (2007) Activation of EGFR and ERK by rhomboid signaling regulates the consolidation and maintenance of sleep in Drosophila. Nat Neurosci 10:1160–1167
Frank MG, Stryker MP, Tecott LH (2002) Sleep and sleep homeostasis in mice lacking the 5-HT2c receptor. Neuropsychopharmacology 27:869–873
Franken P (2002) Long-term vs. short-term processes regulating REM sleep. J Sleep Res 11:17–28
Franken P (2012) Genetic mechanisms underlying rhythmic EEG activity during sleep. In: Frank MG (ed) Brain activity in sleep. Elsevier, Amsterdam, pp 55–89
Franken P (2013) A role for clock genes in sleep homeostasis. Curr Opin Neurobiol 23(5):864–872
Franken P, Chollet D, Tafti M (2001) The homeostatic regulation of sleep need is under genetic control. J Neurosci 21:2610–2621
Franken P, Dijk DJ (2009) Circadian clock genes and sleep homeostasis. Eur J Neurosci 29:1820–1829
Franken P, Dijk DJ, Tobler I, Borbely AA (1991a) Sleep deprivation in rats: effects on EEG power spectra, vigilance states, and cortical temperature. Am J Physiol 261:R198–R208
Franken P, Dudley CA, Estill SJ, Barakat M, Thomason R, O’Hara BF, McKnight SL (2006) NPAS2 as a transcriptional regulator of non-rapid eye movement sleep: genotype and sex interactions. Proc Natl Acad Sci U S A 103:7118–7123
Franken P, Lopez-Molina L, Marcacci L, Schibler U, Tafti M (2000) The transcription factor DBP affects circadian sleep consolidation and rhythmic EEG activity. J Neurosci 20:617–625
Franken P, Malafosse A, Tafti M (1999) Genetic determinants of sleep regulation in inbred mice. Sleep 22:155–169
Franken P, Thomason R, Heller HC, O’Hara BF (2007) A non-circadian role for clock-genes in sleep homeostasis: a strain comparison. BMC Neurosci 8:87
Franken P, Tobler I, Borbely AA (1991b) Sleep homeostasis in the rat: simulation of the time course of EEG slow-wave activity. Neurosci Lett 130:141–144
Fredholm BB, Irenius E, Kull B, Schulte G (2001) Comparison of the potency of adenosine as an agonist at human adenosine receptors expressed in Chinese hamster ovary cells. Biochem Pharmacol 61:443–448
Garcia JA, Zhang D, Estill SJ, Michnoff C, Rutter J, Reick M, Scott K, Diaz-Arrastia R, McKnight SL (2000) Impaired cued and contextual memory in NPAS2-deficient mice. Science 288:2226–2230
Geyer H (1937) Uber den Schlaf von Zwillingen. Z Indukt Abstamm verebungsl 78:524–527
Goel N, Banks S, Lin L, Mignot E, Dinges DF (2011) Catechol-O-methyltransferase Val158Met polymorphism associates with individual differences in sleep physiologic responses to chronic sleep loss. PLoS ONE 6:e29283
Groeger JA, Viola AU, Lo JC, von Schantz M, Archer SN, Dijk DJ (2008) Early morning executive functioning during sleep deprivation is compromised by a PERIOD3 polymorphism. Sleep 31:1159–1167
Gu YZ, Hogenesch JB, Bradfield CA (2000) The PAS superfamily: sensors of environmental and developmental signals. Annu Rev Pharmacol Toxicol 40:519–561
Guan Z, Peng X, Fang J (2004) Sleep deprivation impairs spatial memory and decreases extracellular signal-regulated kinase phosphorylation in the hippocampus. Brain Res 1018:38–47
Hajdu I, Obal F Jr, Fang J, Krueger JM, Rollo CD (2002) Sleep of transgenic mice producing excess rat growth hormone. Am J Physiol Regul Integr Comp Physiol 282:R70–R76
Halassa MM, Florian C, Fellin T, Munoz JR, Lee SY, Abel T, Haydon PG, Frank MG (2009) Astrocytic modulation of sleep homeostasis and cognitive consequences of sleep loss. Neuron 61:213–219
Hasan S, van der Veen DR, Winsky-Sommerer R, Dijk DJ, Archer SN (2011) Altered sleep and behavioral activity phenotypes in PER3-deficient mice. Am J Physiol Regul Integr Comp Physiol 301:R1821–R1830
Hasan S, Winsky-Sommerer R, Dijk DJ, Archer SN (2012) Abstracts. J Sleep Res 21:1–387
Hayaishi O, Urade Y, Eguchi N, Huang ZL (2004) Genes for prostaglandin d synthase and receptor as well as adenosine A2A receptor are involved in the homeostatic regulation of nrem sleep. Arch Ital Biol 142:533–539
He Y, Jones CR, Fujiki N, Xu Y, Guo B, Holder JL Jr, Rossner MJ, Nishino S, Fu YH (2009) The transcriptional repressor DEC2 regulates sleep length in mammals. Science 325:866–870
Hinard V, Mikhail C, Pradervand S, Curie T, Houtkooper RH, Auwerx J, Franken P, Tafti M (2012) Key electrophysiological, molecular, and metabolic signatures of sleep and wakefulness revealed in primary cortical cultures. J Neurosci 32(36):12506–12517
Hu JH, Park JM, Park S, Xiao B, Dehoff MH, Kim S, Hayashi T, Schwarz MK, Huganir RL, Seeburg PH, Linden DJ, Worley PF (2010) Homeostatic scaling requires group I mGluR activation mediated by Homer1a. Neuron 68(6):1128–1142
Huang ZL, Urade Y, Hayaishi O (2007) Prostaglandins and adenosine in the regulation of sleep and wakefulness. Curr Opin Pharmacol 7:33–38
Huber R, Deboer T, Tobler I (2000) Effects of sleep deprivation on sleep and sleep EEG in three mouse strains: empirical data and simulations. Brain Res 857:8–19
Huber R, Ghilardi MF, Massimini M, Tononi G (2004) Local sleep and learning. Nature 430:78–81
Huber R, Tononi G, Cirelli C (2007) Exploratory behavior, cortical BDNF expression, and sleep homeostasis. Sleep 30:129–139
Jenkins A, Archer SN, von Schantz M (2005) Expansion during primate radiation of a variable number tandem repeat in the coding region of the circadian clock gene period3. J Biol Rhythms 20:470–472
Johnson TE, Wood WB (1982) Genetic analysis of life-span in Caenorhabditis elegans. Proc Natl Acad Sci U S A 79:6603–6607
Kalinchuk AV, McCarley RW, Porkka-Heiskanen T, Basheer R (2011) The time course of adenosine, nitric oxide (NO) and inducible NO synthase changes in the brain with sleep loss and their role in the non-rapid eye movement sleep homeostatic cascade. J Neurochem 116:260–272
Kaushal N, Ramesh V, Gozal D (2012) TNF-α and temporal changes in sleep architecture in mice exposed to sleep fragmentation. PLoS ONE 7(9):e45610
King DP, Zhao Y, Sangoram AM, Wilsbacher LD, Tanaka M, Antoch MP, Steeves TD, Vitaterna MH, Kornhauser JM, Lowrey PL, Turek FW, Takahashi JS (1997) Positional cloning of the mouse circadian clock gene. Cell 89:641–653
Klein DC, Moore RY, Reppert SM (1991) Suprachiasmatic nucleus: the mind’s clock. Oxford University Press, New York
Knight J, Abbott A (2002) Full house. Nature 417:785–786
Ko CH, Takahashi JS (2006) Molecular components of the mammalian circadian clock. Hum Mol Genet 15(Spec No 2):R271–R277
Koh K, Joiner WJ, Wu MN, Yue Z, Smith CJ, Sehgal A (2008) Identification of SLEEPLESS, a sleep-promoting factor. Science 321:372–376
Kopp C, Albrecht U, Zheng B, Tobler I (2002) Homeostatic sleep regulation is preserved in mPer1 and mPer2 mutant mice. Eur J Neurosci 16:1099–1106
Kover PX, Valdar W, Trakalo J, Scarcelli N, Ehrenreich IM, Purugganan MD, Durrant C, Mott R (2009) A Multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet 5:e1000551
Krueger JM (2008) The role of cytokines in sleep regulation. Curr Pharm Des 14:3408–3416
Krueger JM, Rector DM, Roy S, Van Dongen HP, Belenky G, Panksepp J (2008) Sleep as a fundamental property of neuronal assemblies. Nat Rev Neurosci 9:910–919
Krueger JM, Clinton JM, Winters BD, Zielinski MR, Taishi P, Jewett KA, Davis CJ (2011) Involvement of cytokines in slow wave sleep. Prog Brain Res 193:39–47
Kume K, Kume S, Park SK, Hirsh J, Jackson FR (2005) Dopamine is a regulator of arousal in the fruit fly. J Neurosci 25:7377–7384
Lander ES, Botstein D (1989) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185–199
Laposky A, Easton A, Dugovic C, Walisser J, Bradfield C, Turek F (2005) Deletion of the mammalian circadian clock gene BMAL1/Mop3 alters baseline sleep architecture and the response to sleep deprivation. Sleep 28:395–409
Larkin JE, Yokogawa T, Heller HC, Franken P, Ruby NF (2004) Homeostatic regulation of sleep in arrhythmic Siberian hamsters. Am J Physiol Regul Integr Comp Physiol 287:R104–R111
Latini S, Pedata F (2001) Adenosine in the central nervous system: release mechanisms and extracellular concentrations. J Neurochem 79:463–484
Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, Crook BE, Czaplinska A, Dang CN, Datta S, Dee NR, Desaki AL, Desta T, Diep E, Dolbeare TA, Donelan MJ, Dong HW, Dougherty JG, Duncan BJ, Ebbert AJ, Eichele G, Estin LK, Faber C, Facer BA, Fields R, Fischer SR, Fliss TP, Frensley C, Gates SN, Glattfelder KJ, Halverson KR, Hart MR, Hohmann JG, Howell MP, Jeung DP, Johnson RA, Karr PT, Kawal R, Kidney JM, Knapik RH, Kuan CL, Lake JH, Laramee AR, Larsen KD, Lau C, Lemon TA, Liang AJ, Liu Y, Luong LT, Michaels J, Morgan JJ, Morgan RJ, Mortrud MT, Mosqueda NF, Ng LL, Ng R, Orta GJ, Overly CC, Pak TH, Parry SE, Pathak SD, Pearson OC, Puchalski RB, Riley ZL, Rockett HR, Rowland SA, Royall JJ, Ruiz MJ, Sarno NR, Schaffnit K, Shapovalova NV, Sivisay T, Slaughterbeck CR, Smith SC, Smith KA, Smith BI, Sodt AJ, Stewart NN, Stumpf KR, Sunkin SM, Sutram M, Tam A, Teemer CD, Thaller C, Thompson CL, Varnam LR, Visel A, Whitlock RM, Wohnoutka PE, Wolkey CK, Wong VY et al (2007) Genome-wide atlas of gene expression in the adult mouse brain. Nature 445:168–176
Li Y, Alvarez OA, Gutteling EW, Tijsterman M, Fu J, Riksen JA, Hazendonk E, Prins P, Plasterk RH, Jansen RC, Breitling R, Kammenga JE (2006) Mapping determinants of gene expression plasticity by genetical genomics in C. elegans. PLoS Genet 2:e222
Linkowski P (1999) EEG sleep patterns in twins. J Sleep Res 8(Suppl 1):11–13
Lopez-Molina L, Conquet F, Dubois-Dauphin M, Schibler U (1997) The DBP gene is expressed according to a circadian rhythm in the suprachiasmatic nucleus and influences circadian behavior. EMBO J 16:6762–6771
Mackiewicz M, Pack AI (2003) Functional genomics of sleep. Respir Physiol Neurobiol 135:207–220
Mackiewicz M, Paigen B, Naidoo N, Pack AI (2008) Analysis of the QTL for sleep homeostasis in mice: Homer1a is a likely candidate. Physiol Genomics 33:91–99
Mackiewicz M, Shockley KR, Romer MA, Galante RJ, Zimmerman JE, Naidoo N, Baldwin DA, Jensen ST, Churchill GA, Pack AI (2007) Macromolecule biosynthesis: a key function of sleep. Physiol Genomics 31:441–457
Mackiewicz M, Zimmerman JE, Shockley KR, Churchill GA, Pack AI (2009) What are microarrays teaching us about sleep? Trends Mol Med 15:79–87
Maret S, Dorsaz S, Gurcel L, Pradervand S, Petit B, Pfister C, Hagenbuchle O, O’Hara BF, Franken P, Tafti M (2007) Homer1a is a core brain molecular correlate of sleep loss. Proc Natl Acad Sci U.S.A 104:20090–20095
Maret S, Franken P, Dauvilliers Y, Ghyselinck NB, Chambon P, Tafti M (2005) Retinoic acid signaling affects cortical synchrony during sleep. Science 310:111–113
Mizoguchi A, Eguchi N, Kimura K, Kiyohara Y, Qu WM, Huang ZL, Mochizuki T, Lazarus M, Kobayashi T, Kaneko T, Narumiya S, Urade Y, Hayaishi O (2001) Dominant localization of prostaglandin D receptors on arachnoid trabecular cells in mouse basal forebrain and their involvement in the regulation of non-rapid eye movement sleep. Proc Natl Acad Sci U S A 98:11674–11679
Mongrain V, Hernandez SA, Pradervand S, Dorsaz S, Curie T, Hagiwara G, Gip P, Heller HC, Franken P (2010) Separating the contribution of glucocorticoids and wakefulness to the molecular and electrophysiological correlates of sleep homeostasis. Sleep 33:1147–1157
Mongrain V, La Spada F, Curie T, Franken P (2011) Sleep loss reduces the DNA-binding of BMAL1, CLOCK, and NPAS2 to specific clock genes in the mouse cerebral cortex. PLoS ONE 6:e26622
Mracek P, Santoriello C, Idda ML, Pagano C, Ben-Moshe Z, Gothilf Y, Vallone D, Foulkes NS (2012) Regulation of per and cry genes reveals a central role for the D-box enhancer in light-dependent gene expression. PLoS ONE 7:e51278
Naidoo N, Casiano V, Cater J, Zimmerman J, Pack AI (2007) A role for the molecular chaperone protein BiP/GRP78 in Drosophila sleep homeostasis. Sleep 30:557–565
Naidoo N, Ferber M, Galante RJ, McShane B, Hu JH, Zimmerman J, Maislin G, Cater J, Wyner A, Worley P, Pack AI (2012) Role of Homer proteins in the maintenance of sleep-wake states. PLoS ONE 7:e35174
Naidoo N, Giang W, Galante RJ, Pack AI (2005) Sleep deprivation induces the unfolded protein response in mouse cerebral cortex. J Neurochem 92:1150–1157
Naylor E, Bergmann BM, Krauski K, Zee PC, Takahashi JS, Vitaterna MH, Turek FW (2000) The circadian clock mutation alters sleep homeostasis in the mouse. J Neurosci 20:8138–8143
Neckelmann D, Ursin R (1993) Sleep stages and EEG power spectrum in relation to acoustical stimulus arousal threshold in the rat. Sleep 16:467–477
Obal F Jr, Alt J, Taishi P, Gardi J, Krueger JM (2003) Sleep in mice with nonfunctional growth hormone-releasing hormone receptors. Am J Physiol Regul Integr Comp Physiol 284:R131–R139
Obal F Jr, Fang J, Taishi P, Kacsoh B, Gardi J, Krueger JM (2001) Deficiency of growth hormone-releasing hormone signaling is associated with sleep alterations in the dwarf rat. J Neurosci 21:2912–2918
Obal F Jr, Krueger JM (2004) GHRH and sleep. Sleep Med Rev 8:367–377
Ocampo-Garcés A, Molina E, Rodríguez A, Vivaldi EA (2000) Homeostasis of REM sleep after total and selective sleep deprivation in the rat. J Neurophysiol 84:2699–2702
Palchykova S, Winsky-Sommerer R, Shen HY, Boison D, Gerling A, Tobler I (2010) Manipulation of adenosine kinase affects sleep regulation in mice. J Neurosci 30:13157–13165
Philip VM, Sokoloff G, Ackert-Bicknell CL, Striz M, Branstetter L, Beckmann MA, Spence JS, Jackson BL, Galloway LD, Barker P, Wymore AM, Hunsicker PR, Durtschi DC, Shaw GS, Shinpock S, Manly KF, Miller DR, Donohue KD, Culiat CT, Churchill GA, Lariviere WR, Palmer AA, O’Hara BF, Voy BH, Chesler EJ (2001) Genetic analysis in the Collaborative Cross breeding population. Genome Res 21:1223–1238
Popa D, El Yacoubi M, Vaugeois JM, Hamon M, Adrien J (2006) Homeostatic regulation of sleep in a genetic model of depression in the mouse: effects of muscarinic and 5-HT1A receptor activation. Neuropsychopharmacology 31:1637–1646
Porkka-Heiskanen T, Strecker RE, McCarley RW (2000) Brain site-specificity of extracellular adenosine concentration changes during sleep deprivation and spontaneous sleep: an in vivo microdialysis study. Neuroscience 99:507–517
Porkka-Heiskanen T, Strecker RE, Thakkar M, Bjorkum AA, Greene RW, McCarley RW (1997) Adenosine: a mediator of the sleep-inducing effects of prolonged wakefulness. Science 276:1265–1268
Qu WM, Xu XH, Yan MM, Wang YQ, Urade Y, Huang ZL (2010) Essential role of dopamine D2 receptor in the maintenance of wakefulness, but not in homeostatic regulation of sleep, in mice. J Neurosci 30:4382–4389
Rainnie DG, Grunze HC, McCarley RW, Greene RW (1994) Adenosine inhibition of mesopontine cholinergic neurons: implications for EEG arousal. Science 263:689–692
Rechtschaffen A, Bergmann BM, Gilliland MA, Bauer K (1999) Effects of method, duration, and sleep stage on rebounds from sleep deprivation in the rat. Sleep 22:11–13
Retey JV, Adam M, Khatami R, Luhmann UF, Jung HH, Berger W, Landolt HP (2007) A genetic variation in the adenosine A2A receptor gene (ADORA2A) contributes to individual sensitivity to caffeine effects on sleep. Clin Pharmacol Ther 81:692–698
Rhyner TA, Borbely AA, Mallet J (1990) Molecular cloning of forebrain mRNAs which are modulated by sleep deprivation. Eur J Neurosci 2:1063–1073
Ringwald M, Iyer V, Mason JC, Stone KR, Tadepally HD, Kadin JA, Bult CJ, Eppig JT, Oakley DJ, Briois S, Stupka E, Maselli V, Smedley D, Liu S, Hansen J, Baldock R, Hicks GG, Skarnes WC (2011) The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium. Nucleic Acids Res 39:D849–D855
Rockman MV, Kruglyak L (2009) Recombinational landscape and population genomics of Caenorhabditis elegans. PLoS Genet 5:e1000419
Roth C, Achermann P, Borbely AA (1999) Alpha activity in the human REM sleep EEG: topography and effect of REM sleep deprivation. Clin Neurophysiol 110:632–635
Rupp TL, Wesensten NJ, Newman R, Balkin TJ (2012) PER3 and ADORA2A polymorphisms impact neurobehavioral performance during sleep restriction. J Sleep Res 22(2):160–165
Rutter J, Reick M, Wu LC, McKnight SL (2001) Regulation of clock and NPAS2 DNA binding by the redox state of NAD cofactors. Science 293:510–514
Schmitt LI, Sims RE, Dale N, Haydon PG (2012) Wakefulness affects synaptic and network activity by increasing extracellular astrocyte-derived adenosine. J Neurosci 32:4417–4425
Seugnet L, Boero J, Gottschalk L, Duntley SP, Shaw PJ (2006) Identification of a biomarker for sleep drive in flies and humans. Proc Natl Acad Sci U.S.A 103:19913–19918
Shaw PJ, Cirelli C, Greenspan RJ, Tononi G (2000) Correlates of sleep and waking in Drosophila melanogaster. Science 287:1834–1837
Shaw PJ, Franken P (2003) Perchance to dream: solving the mystery of sleep through genetic analysis. J Neurobiol 54:179–202
Shaw PJ, Tononi G, Greenspan RJ, Robinson DF (2002) Stress response genes protect against lethal effects of sleep deprivation in Drosophila. Nature 417:287–291
Shearman LP, Jin X, Lee C, Reppert SM, Weaver DR (2000) Targeted disruption of the mPer3 gene: subtle effects on circadian clock function. Mol Cell Biol 20:6269–6275
Shiromani PJ, Xu M, Winston EM, Shiromani SN, Gerashchenko D, Weaver DR (2004) Sleep rhythmicity and homeostasis in mice with targeted disruption of mPeriod genes. Am J Physiol Regul Integr Comp Physiol 287:R47–R57
Stassen HH, Coppola R, Gottesman II, Torrey EF, Kuny S, Rickler KC, Hell D (1999) EEG differences in monozygotic twins discordant and concordant for schizophrenia. Psychophysiology 36:109–117
Stenberg D, Litonius E, Halldner L, Johansson B, Fredholm BB, Porkka-Heiskanen T (2003) Sleep and its homeostatic regulation in mice lacking the adenosine A1 receptor. J Sleep Res 12:283–290
Szumlinski KK, Kalivas PW, Worley PF (2006) Homer proteins: implications for neuropsychiatric disorders. Curr Opin Neurobiol 16(3):251–257
Taishi P, Churchill L, Wang M, Kay D, Davis CJ, Guan X, De A, Yasuda T, Liao F, Krueger JM (2007) TNFalpha siRNA reduces brain TNF and EEG delta wave activity in rats. Brain Res 1156:125–132
Takahashi Y, Ebihara S, Nakamura Y, Takahashi K (1981) A model of human sleep-related growth hormone secretion in dogs: effects of 3, 6, and 12 hours of forced wakefulness on plasma growth hormone, cortisol, and sleep stages. Endocrinology 109:262–272
Takahashi Y, Kipnis DM, Daughaday WH (1968) Growth hormone secretion during sleep. J Clin Invest 47:2079–2090
Talbot CJ, Nicod A, Cherny SS, Fulker DW, Collins AC, Flint J (1999) High-resolution mapping of quantitative trait loci in outbred mice. Nat Genet 21:305–308
Tasali E, Leproult R, Ehrmann DA, Van Cauter E (2008) Slow-wave sleep and the risk of type 2 diabetes in humans. Proc Natl Acad Sci U S A 105:1044–1049
Terao A, Wisor JP, Peyron C, Apte-Deshpande A, Wurts SW, Edgar DM, Kilduff TS (2006) Gene expression in the rat brain during sleep deprivation and recovery sleep: an Affymetrix GeneChip study. Neuroscience 137:593–605
Thompson CL, Wisor JP, Lee CK, Pathak SD, Gerashchenko D, Smith KA, Fischer SR, Kuan CL, Sunkin SM, Ng LL, Lau C, Hawrylycz M, Jones AR, Kilduff TS, Lein ES (2010) Molecular and anatomical signatures of sleep deprivation in the mouse brain. Front Neurosci 4:165
Tobler I, Borbely AA (1986) Sleep EEG in the rat as a function of prior waking. Electroencephalogr Clin Neurophysiol 64:74–76
Tononi G, Cirelli C (2006) Sleep function and synaptic homeostasis. Sleep Med Rev 10(1):49–62
Tomioka K, Matsumoto A (2010) A comparative view of insect circadian clock systems. Cell Mol Life Sci 67:1397–1406
Trachsel L, Edgar DM, Seidel WF, Heller HC, Dement WC (1992) Sleep homeostasis in suprachiasmatic nuclei-lesioned rats: effects of sleep deprivation and triazolam administration. Brain Res 589:253–261
Ukai-Tadenuma M, Yamada RG, Xu H, Ripperger JA, Liu AC, Ueda HR (2011) Delay in feedback repression by cryptochrome 1 is required for circadian clock function. Cell 144:268–281
Urade Y, Eguchi N, Qu WM, Sakata M, Huang ZL, Chen JF, Schwarzschild MA, Fink JS, Hayaishi O (2003) Sleep regulation in adenosine A2A receptor-deficient mice. Neurology 61:S94–S96
Urade Y, Hayaishi O (2011) Prostaglandin D2 and sleep/wake regulation. Sleep Med Rev 15:411–418
Valatx JL, Bugat R (1974) Genetic factors as determinants of the waking-sleep cycle in the mouse (author’s transl). Brain Res 69:315–330
Valatx JL, Bugat R, Jouvet M (1972) Genetic studies of sleep in mice. Nature 238:226–227
van Beijsterveldt CE, Molenaar PC, de Geus EJ, Boomsma DI (1996) Heritability of human brain functioning as assessed by electroencephalography. Am J Hum Genet 58:562–573
van der Horst GT, Muijtjens M, Kobayashi K, Takano R, Kanno S, Takao M, de Wit J, Verkerk A, Eker AP, van Leenen D, Buijs R, Bootsma D, Hoeijmakers JH, Yasui A (1999) Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms. Nature 398:627–630
Van der Veen DR, Archer SN (2010) Light-dependent behavioral phenotypes in PER3-deficient mice. J Biol Rhythms 25:3–8
Vatine G, Vallone D, Appelbaum L, Mracek P, Ben-Moshe Z, Lahiri K, Gothilf Y, Foulkes NS (2009) Light directs zebrafish period2 expression via conserved D and E boxes. PLoS Biol 7:e1000223
Vienne J, Bettler B, Franken P, Tafti M (2010) Differential effects of GABAB receptor subtypes, {gamma}-hydroxybutyric Acid, and Baclofen on EEG activity and sleep regulation. J Neurosci 30:14194–14204
Viola AU, Archer SN, James LM, Groeger JA, Lo JC, Skene DJ, von Schantz M, Dijk DJ (2007) PER3 polymorphism predicts sleep structure and waking performance. Curr Biol 17:613–618
Viola AU, Chellappa SL, Archer SN, Pugin F, Gotz T, Dijk DJ, Cajochen C (2012) Interindividual differences in circadian rhythmicity and sleep homeostasis in older people: effect of a PER3 polymorphism. Neurobiol Aging 33(1010):e1017–e1027
Vitaterna MH, King DP, Chang AM, Kornhauser JM, Lowrey PL, McDonald JD, Dove WF, Pinto LH, Turek FW, Takahashi JS (1994) Mutagenesis and mapping of a mouse gene, Clock, essential for circadian behavior. Science 264:719–725
Vitaterna MH, Selby CP, Todo T, Niwa H, Thompson C, Fruechte EM, Hitomi K, Thresher RJ, Ishikawa T, Miyazaki J, Takahashi JS, Sancar A (1999) Differential regulation of mammalian period genes and circadian rhythmicity by cryptochromes 1 and 2. Proc Natl Acad Sci U S A 96:12114–12119
Ward LD, Kellis M (2012) HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. Nucleic Acids Res 40:D930–D934
Werth E, Dijk DJ, Achermann P, Borbely AA (1996) Dynamics of the sleep EEG after an early evening nap: experimental data and simulations. Am J Physiol 271:R501–R510
Wimmer RD, Astori S, Bond CT, Rovo Z, Chatton JY, Adelman JP, Franken P, Luthi A (2012) Sustaining sleep spindles through enhanced SK2-channel activity consolidates sleep and elevates arousal threshold. J Neurosci 32:13917–13928
Winsky-Sommerer R (2009) Role of GABAA receptors in the physiology and pharmacology of sleep. Eur J Neurosci 29:1779–1794
Wisor JP, O’Hara BF, Terao A, Selby CP, Kilduff TS, Sancar A, Edgar DM, Franken P (2002) A role for cryptochromes in sleep regulation. BMC Neurosci 3:20
Wisor JP, Pasumarthi RK, Gerashchenko D, Thompson CL, Pathak S, Sancar A, Franken P, Lein ES, Kilduff TS (2008) Sleep deprivation effects on circadian clock gene expression in the cerebral cortex parallel electroencephalographic differences among mouse strains. J Neurosci 28:7193–7201
Wu MN, Ho K, Crocker A, Yue Z, Koh K, Sehgal A (2009) The effects of caffeine on sleep in Drosophila require PKA activity, but not the adenosine receptor. J Neurosci 29:11029–11037
Wu MN, Koh K, Yue Z, Joiner WJ, Sehgal A (2008) A genetic screen for sleep and circadian mutants reveals mechanisms underlying regulation of sleep in Drosophila. Sleep 31:465–472
Yalcin B, Nicod J, Bhomra A, Davidson S, Cleak J, Farinelli L, Osteras M, Whitley A, Yuan W, Gan X, Goodson M, Klenerman P, Satpathy A, Mathis D, Benoist C, Adams DJ, Mott R, Flint J (2010) Commercially available outbred mice for genome-wide association studies. PLoS Genet 6(9):e1001085
Yamajuku D, Shibata Y, Kitazawa M, Katakura T, Urata H, Kojima T, Nakata O, Hashimoto S (2010) Identification of functional clock-controlled elements involved in differential timing of Per1 and Per2 transcription. Nucleic Acids Res 38:7964–7973
Yamajuku D, Shibata Y, Kitazawa M, Katakura T, Urata H, Kojima T, Takayasu S, Nakata O, Hashimoto S (2011) Cellular DBP and E4BP4 proteins are critical for determining the period length of the circadian oscillator. FEBS Lett 585:2217–2222
Yoshida H, Peterfi Z, Garcia-Garcia F, Kirkpatrick R, Yasuda T, Krueger JM (2004) State-specific asymmetries in EEG slow wave activity induced by local application of TNFalpha. Brain Res 1009:129–136
Zielinski MR, Taishi P, Clinton JM, Krueger JM (2012) 5’-Ectonucleotidase-knockout mice lack non-REM sleep responses to sleep deprivation. Eur J Neurosci 35:1789–1798
Zimmerman JE, Naidoo N, Raizen DM, Pack AI (2008) Conservation of sleep: insights from non-mammalian model systems. Trends Neurosci 31:371–376
Zimmerman JE, Rizzo W, Shockley KR, Raizen DM, Naidoo N, Mackiewicz M, Churchill GA, Pack AI (2006) Multiple mechanisms limit the duration of wakefulness in Drosophila brain. Physiol Genomics 27:337–350
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2013 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Mang, G.M., Franken, P. (2013). Genetic Dissection of Sleep Homeostasis. In: Meerlo, P., Benca, R., Abel, T. (eds) Sleep, Neuronal Plasticity and Brain Function. Current Topics in Behavioral Neurosciences, vol 25. Springer, Berlin, Heidelberg. https://doi.org/10.1007/7854_2013_270
Download citation
DOI: https://doi.org/10.1007/7854_2013_270
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-662-46877-7
Online ISBN: 978-3-662-46878-4
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)