Skip to main content

Lysine-Specific Histone Demethylases 1/2 (LSD1/2) and Their Inhibitors

  • Chapter
  • First Online:
Chemical Epigenetics

Part of the book series: Topics in Medicinal Chemistry ((TMC,volume 33))

Abstract

Histone lysine methylation, one of the epigenetic mechanisms, plays a pivotal role in various biological events, including cell cycle progression, immune response, and signal transduction. Histone methylation is closely associated with the oncogenesis and proliferation of cancer cells, and its alteration has been identified in many cancer cells. In addition, histone methylation is involved in such non-cancerous diseases as globin disorders and neurological disorders. Several enzymes that control histone methylation have been identified, including lysine-specific histone demethylases 1/2 (LSD1/2). As LSD1/2 are involved in various diseases, their inhibitors are considered useful not only as a chemical tool for probing the biology of LSD1/2 but also as therapeutic agents. In this chapter, the biology, pharmacology, and inhibitors of LSD1/2 are presented, and the potential of LSD inhibitors as therapeutic agents is discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Abbreviations

ADC:

Antibody-drug conjugates

AML:

Acute myelogenous leukemia

AR:

Androgen receptor

ATRA:

All-trans-retinoic acid

CNS:

Central nervous system

DDS:

Drug delivery systems

ERα:

Estrogen receptor α

FAD:

Flavin adenine dinucleotide

GSC:

Glioma stem cells

HCF-1:

Host cell factor-1

HSV:

Herpes simplex virus

KDM:

Lysine demethylase

KMT:

Lysine methyltransferase

LSD:

Lysine-specific histone demethylase

MAO:

Monoamine oxidase

MDS:

Myelodysplastic syndrome

NSCLC:

Non-small cell lung cancer

PCPA:

Phenylcyclopropylamine

PDC:

PCPA-drug conjugate

SCLC:

Small cell lung carcinoma

siRNA:

Small interfering RNA

VZV:

Varicella zoster virus

References

  1. Kubicek S, Jenuwein T (2004) A crack in histone lysine methylation. Cell 119:903–906

    Article  CAS  PubMed  Google Scholar 

  2. Bannister AJ, Kouzarides T (2005) Reversing histone methylation. Nature 436:1103–1106

    Article  CAS  PubMed  Google Scholar 

  3. Santos-Rosa H, Schneider R, Bannister AJ, Sherriff J, Bernstein BE, Emre NC, Schreiber SL, Mellor J, Kouzarides T (2002) Active genes are tri-methylated at K4 of histone H3. Nature 419:407–411

    Article  CAS  PubMed  Google Scholar 

  4. Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (2007) High-resolution profiling of histone methylations in the human genome. Cell 129:823–837

    Article  CAS  PubMed  Google Scholar 

  5. Itoh Y, Suzuki T, Miyata N (2013) Small-molecular modulators of cancer-associated epigenetic mechanisms. Mol Biosyst 9:873–896

    Article  CAS  PubMed  Google Scholar 

  6. Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119:941–953

    Article  CAS  PubMed  Google Scholar 

  7. Metzger E, Wissmann M, Yin N, Müller JM, Schneider R, Peters AH, Günther T, Buettner R, Schüle R (2005) LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription. Nature 437:436–439

    Article  CAS  PubMed  Google Scholar 

  8. Huang J, Sengupta R, Espejo AB, Lee MG, Dorsey JA, Richter M, Opravil S, Shiekhattar R, Bedford MT, Jenuwein T, Berger SL (2007) p53 is regulated by the lysine demethylase LSD1. Nature 449:105–108

    Article  CAS  PubMed  Google Scholar 

  9. Wang J, Hevi S, Kurash JK, Lei H, Gay F, Bajko J, Su H, Sun W, Chang H, Xu G, Gaudet F, Li E, Chen T (2009) The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation. Nat Genet 41:125–129

    Article  CAS  PubMed  Google Scholar 

  10. Yang J, Huang J, Dasgupta M, Sears N, Miyagi M, Wang B, Chance MR, Chen X, Du Y, Wang Y, An L, Wang Q, Lu T, Zhang X, Wang Z, Stark GR (2010) Reversible methylation of promoter-bound STAT3 by histone-modifying enzymes. Proc Natl Acad Sci U S A 107:21499–21504

    Article  PubMed  PubMed Central  Google Scholar 

  11. Kontaki H, Talianidis I (2010) Lysine methylation regulates E2F1-induced cell death. Mol Cell 39:152–160

    Article  CAS  PubMed  Google Scholar 

  12. Cho HS, Suzuki T, Dohmae N, Hayami S, Unoki M, Yoshimatsu M, Toyokawa G, Takawa M, Chen T, Kurash JK, Field HI, Ponder BA, Nakamura Y, Hamamoto R (2011) Demethylation of RB regulator MYPT1 by histone demethylase LSD1 promotes cell cycle progression in cancer cells. Cancer Res 71:655–660

    Article  CAS  PubMed  Google Scholar 

  13. Karytinos A, Forneris F, Profumo A, Ciossani G, Battaglioli E, Binda C, Mattevi A (2009) A novel mammalian flavin-dependent histone demethylase. J Biol Chem 284:17775–17782

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Fang R, Barbera AJ, Xu Y, Rutenberg M, Leonor T, Bi Q, Lan F, Mei P, Yuan GC, Lian C, Peng J, Cheng D, Sui G, Kaiser UB, Shi Y, Shi YG (2010) Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation. Mol Cell 39:222–233

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Yang Z, Jiang J, Stewart MD, Qi S, Yamane K, Li J, Zhang Y, Wong J (2010) AOF1 is a histone H3K4 demethylase possessing demethylase activity-independent repression function. Cell Res 20:276–287

    Article  CAS  PubMed  Google Scholar 

  16. Yang Y, Yin X, Yang H, Xu Y (2015) Histone demethylase LSD2 acts as an E3 ubiquitin ligase and inhibits cancer cell growth through promoting proteasomal degradation of OGT. Mol Cell 58:47–59

    Article  CAS  PubMed  Google Scholar 

  17. Yang M, Culhane JC, Szewczuk LM, Gocke CB, Brautigam CA, Tomchick DR, Machius M, Cole PA, Yu H (2007) Structural basis of histone demethylation by LSD1 revealed by suicide inactivation. Nat Struct Mol Biol 14:535–539

    Article  CAS  PubMed  Google Scholar 

  18. Baron R, Binda C, Tortorici M, McCammon JA, Mattevi A (2011) Molecular mimicry and ligand recognition in binding and catalysis by the histone demethylase LSD1-CoREST complex. Structure 19:212–220

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Forneris F, Binda C, Dall’Aglio A, Fraaije MW, Battaglioli E, Mattevi A (2006) A highly specific mechanism of histone H3-K4 recognition by histone demethylase LSD1. J Biol Chem 281:35289–35295

    Article  CAS  PubMed  Google Scholar 

  20. Fang R, Chen F, Dong Z, Hu D, Barbera AJ, Clark EA, Fang J, Yang Y, Mei P, Rutenberg M, Li Z, Zhang Y, Xu Y, Yang H, Wang P, Simon MD, Zhou Q, Li J, Marynick MP, Li X, Lu H, Kaiser UB, Kingston RE, Xu Y, Shi YG (2013) LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation. Mol Cell 49:558–570

    Article  CAS  PubMed  Google Scholar 

  21. Chen F, Yang H, Dong Z, Fang J, Wang P, Zhu T, Gong W, Fang R, Shi YG, Li Z, Xu Y (2013) Structural insight into substrate recognition by histone demethylase LSD2/KDM1b. Cell Res 23:306–309

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Zhu X, Wang J, Ju BG, Rosenfeld MG (2007) Signaling and epigenetic regulation of pituitary development. Curr Opin Cell Biol 19:605–611

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Hirano K, Namihira M (2016) LSD1 mediates neuronal differentiation of human fetal neural stem cells by controlling the expression of a novel target gene, HEYL. Stem Cells 34:1872–1882

    Article  CAS  PubMed  Google Scholar 

  24. Chen Y, Kim J, Zhang R, Yang X, Zhang Y, Fang J, Chen Z, Teng L, Chen X, Ge H, Atadja P, Li E, Chen T, Qi W (2016) Histone demethylase LSD1 promotes adipocyte differentiation through repressing Wnt signaling. Cell Chem Biol 23:1228–1240

    Article  CAS  PubMed  Google Scholar 

  25. Schulte JH, Lim S, Schramm A, Friedrichs N, Koster J, Versteeg R, Ora I, Pajtler K, Klein-Hitpass L, Kuhfittig-Kulle S, Metzger E, Schűle R, Eggert A, Buettner R, Kirfel J (2009) Lysine-specific demethylase 1 is strongly expressed in poorly differentiated neuroblastoma: implications for therapy. Cancer Res 69:2065–2071

    Article  CAS  PubMed  Google Scholar 

  26. Wissmann M, Yin N, Müller JM, Greschik H, Fodor BD, Jenuwein T, Vogler C, Schneider R, Günther T, Buettner R, Metzger E, Schüle R (2007) Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression. Nat Cell Biol 9:347–353

    Article  CAS  PubMed  Google Scholar 

  27. Scoumanne A, Chen X (2007) The lysine-specific demethylase 1 is required for cell proliferation in both p53-dependent and -independent manners. J Biol Chem 282:15471–15475

    Article  CAS  PubMed  Google Scholar 

  28. Lim S, Janzer A, Becker A, Zimmer A, Schüle R, Buettner R, Kirfel J (2010) Lysine-specific demethylase 1 (LSD1) is highly expressed in ER-negative breast cancers and a biomarker predicting aggressive biology. Carcinogenesis 31:512–520

    Article  CAS  PubMed  Google Scholar 

  29. Wang Y, Zhang H, Chen Y, Sun Y, Yang F, Yu W, Liang J, Sun L, Yang X, Shi L, Li R, Li Y, Zhang Y, Li Q, Yi X, Shang Y (2009) LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer. Cell 138:660–672

    Article  CAS  PubMed  Google Scholar 

  30. Hayami S, Kelly JD, Cho H, Yoshimatsu M, Unoki M, Tsunoda T, Field HI, Neal DE, Yamaue H, Ponder BAJ, Nakamura Y, Hamamoto R (2011) Overexpression of LSD1 contributes to human carcinogenesis through chromatin regulation in various cancers. Int J Cancer 128:574–586

    Article  CAS  PubMed  Google Scholar 

  31. Huang Y, Stewart TM, Wu Y, Baylin SB, Marton LJ, Perkins B, Jones RJ, Woster PM, Casero RA Jr (2009) Novel oligoamine analogues inhibit lysine-specific demethylase 1 and induce reexpression of epigenetically silenced genes. Clin Cancer Res 15:7217–7228

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Cai C, He HH, Chen S, Coleman I, Wang H, Fang Z, Chen S, Nelson PS, Liu XS, Brown M, Balk SP (2011) Androgen receptor gene expression in prostate cancer is directly suppressed by the androgen receptor through recruitment of lysine-specific demethylase 1. Cancer Cell 20:457–471

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Pollock JA, Larrea MD, Jasper JS, McDonnell DP, McCafferty DG (2012) Lysine-specific histone demethylase 1 inhibitors control breast cancer proliferation in ERα-dependent and -independent manners. ACS Chem Biol 7:1221–1231

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. Park UH, Kang MR, Kim EJ, Kwon YS, Hur W, Yoon SK, Song BJ, Park JH, Hwang JT, Jeong JC, Um SJ (2016) ASXL2 promotes proliferation of breast cancer cells by linking ERα to histone methylation. Oncogene 35:3742–3752

    Article  CAS  PubMed  Google Scholar 

  35. Lv T, Yuan D, Miao X, Lv Y, Zhan P, Shen X, Song Y (2012) Over-expression of LSD1 promotes proliferation, migration and invasion in non-small cell lung cancer. PLoS One 7:e35065

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  36. Fu X, Zhang P, Yu B (2017) Advances toward LSD1 inhibitors for cancer therapy. Future Med Chem 9:1227–1242

    Article  CAS  PubMed  Google Scholar 

  37. Wang J, Lu F, Ren Q, Sun H, Xu Z, Lan R, Liu Y, Ward D, Quan J, Ye T, Zhang H (2011) Novel histone demethylase LSD1 inhibitors selectively target cancer cells with pluripotent stem cell properties. Cancer Res 71:7238–7249

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Zhang X, Lu F, Wang J, Yin F, Xu Z, Qi D, Wu X, Cao Y, Liang W, Liu Y, Sun H, Ye T, Zhang H (2013) Pluripotent stem cell protein Sox2 confers sensitivity to LSD1 inhibition in cancer cells. Cell Rep 5:445–457

    Article  CAS  PubMed  Google Scholar 

  39. Stewart CA, Byers LA (2015) Altering the course of small cell lung cancer: targeting cancer stem cells via LSD1 inhibition. Cancer Cell 28:4–6

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Chen L, Vasilatos SN, Qin Y, Katz TA, Cao C, Wu H, Tasdemir N, Levine KM, Oesterreich S, Davidson NE, Huang Y (2017) Functional characterization of lysine-specific demethylase 2 (LSD2/KDM1B) in breast cancer progression. Oncotarget 8:81737–81753

    PubMed  PubMed Central  Google Scholar 

  41. Liang Y, Vogel JL, Narayanan A, Peng H, Kristie TM (2009) Inhibition of the histone demethylase LSD1 blocks α-herpesvirus lytic replication and reactivation from latency. Nat Med 15:1312–1317

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Narayanan A, Ruyechan WT, Kristie TM (2007) The coactivator host cell factor-1 mediates Set1 and MLL1 H3K4 trimethylation at herpesvirus immediate early promoters for initiation of infection. Proc Natl Acad Sci U S A 104:10835–10840

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  43. Sakane N, Kwon HS, Pagans S, Kaehlcke K, Mizusawa Y, Kamada M, Lassen KG, Chan J, Greene WC, Schnoelzer M, Ott M (2011) Activation of HIV transcription by the viral Tat protein requires a demethylation step mediated by lysine-specific demethylase 1 (LSD1/KDM1). PLoS Pathog 7:e1002184

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  44. Andrisani OM (2013) Deregulation of epigenetic mechanisms by the hepatitis B virus X protein in hepatocarcinogenesis. Viruses 5:858–872

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  45. Xu J, Bauer DE, Kerenyi MA, Vo TD, Hou S, Hsu YJ, Yao H, Trowbridge JJ, Mandel G, Orkin SH (2013) Corepressor-dependent silencing of fetal hemoglobin expression by BCL11A. Proc Natl Acad Sci U S A 110:6518–6523

    Article  PubMed  PubMed Central  Google Scholar 

  46. Cui S, Kolodziej KE, Obara N, Amaral-Psarris A, Demmers J, Shi L, Engel JD, Grosveld F, Strouboulis J, Tanabe O (2011) Nuclear receptors TR2 and TR4 recruit multiple epigenetic transcriptional corepressors that associate specifically with the embryonic β-type globin promoters in differentiated adult erythroid cells. Mol Cell Biol 31:3298–3311

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  47. Shi L, Cui S, Engel JD, Tanabe O (2013) Lysine-specific demethylase 1 is a therapeutic target for fetal hemoglobin induction. Nat Med 19:291–294

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  48. Hino S, Sakamoto A, Nagaoka K, Anan K, Wang Y, Mimasu S, Umehara T, Yokoyama S, Kosai K, Nakao M (2012) FAD-dependent lysine-specific demethylase-1 regulates cellular energy expenditure. Nat Commun 3:758

    Article  CAS  PubMed  Google Scholar 

  49. Buesa C, Mascaró C, Rotllant D, Griñan-Ferré C, Pallàs M, Maes T (2015) The dual LSD1/MAOB inhibitor ORY2001 prevents the development of the memory deficit in SAMP8 mice through induction of neuronal plasticity and reduction of neuroinflammation. Alzheimers Dement 11:P905

    Article  Google Scholar 

  50. Rusconi F, Grillo B, Ponzoni L, Bassani S, Toffolo E, Paganini L, Mallei A, Braida D, Passafaro M, Popoli M, Sala M, Battaglioli E (2016) LSD1 modulates stress-evoked transcription of immediate early genes and emotional behavior. Proc Natl Acad Sci U S A 113:3651–3656

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  51. Schmidt DM, McCafferty DG (2007) trans-2-Phenylcyclopropylamine is a mechanism-based inactivator of the histone demethylase LSD1. Biochemistry 46:4408–4416

    Article  CAS  PubMed  Google Scholar 

  52. Yang M, Culhane JC, Szewczuk LM, Jalili P, Ball HL, Machius M, Cole PA, Yu H (2007) Structural basis for the inhibition of the LSD1 histone demethylase by the antidepressant trans-2-phenylcyclopropylamine. Biochemistry 46:8058–8065

    Article  CAS  PubMed  Google Scholar 

  53. Kauffman EC, Robinson BD, Downes MJ, Powell LG, Lee MM, Scherr DS, Gudas LJ, Mongan NP (2011) Role of androgen receptor and associated lysine-demethylase coregulators, LSD1 and JMJD2A, in localized and advanced human bladder cancer. Mol Carcinog 50:931–944

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  54. Schenk T, Chen WC, Göllner S, Howell L, Jin L, Hebestreit K, Klein HU, Popescu AC, Burnett A, Mills K, Casero RA Jr, Marton L, Woster P, Minden MD, Dugas M, Wang JC, Dick JE, Müller-Tidow C, Petrie K, Zelent A (2012) Inhibition of the LSD1 (KDM1A) demethylase reactivates the all-trans-retinoic acid differentiation pathway in acute myeloid leukemia. Nat Med 18:605–611

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  55. Tsutsumi T, Iwao K, Hayashi H, Kirihara T, Kawaji T, Inoue T, Hino S, Nakao M, Tanihara H (2016) Potential neuroprotective effects of an LSD1 inhibitor in retinal ganglion cells via p38 MAPK activity. Invest Ophthalmol Vis Sci 57:6461–6473

    Article  CAS  PubMed  Google Scholar 

  56. Ueda R, Suzuki T, Mino K, Tsumoto H, Nakagawa H, Hasegawa M, Sasaki R, Mizukami T, Miyata N (2009) Identification of cell-active lysine specific demethylase 1-selective inhibitors. J Am Chem Soc 131:17536–17537

    Article  CAS  PubMed  Google Scholar 

  57. Son SY, Ma J, Kondou Y, Yoshimura M, Yamashita E, Tsukihara T (2008) Structure of human monoamine oxidase A at 2.2-Å resolution: the control of opening the entry for substrates/inhibitors. Proc Natl Acad Sci U S A 105:5739–5744

    Article  PubMed  PubMed Central  Google Scholar 

  58. Binda C, Li M, Hubalek F, Restelli N, Edmondson DE, Mattevi A (2003) Insights into the mode of inhibition of human mitochondrial monoamine oxidase B from high-resolution crystal structures. Proc Natl Acad Sci U S A 100:9750–9755

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  59. Etani T, Suzuki T, Naiki T, Naiki-Ito A, Ando R, Iida K, Kawai N, Tozawa K, Miyata N, Kohri K, Takahashi S (2015) NCL1, a highly selective lysine-specific demethylase 1 inhibitor, suppresses prostate cancer without adverse effect. Oncotarget 6:2865–2878

    Article  PubMed  Google Scholar 

  60. Ogasawara D, Itoh Y, Tsumoto H, Kakizawa T, Mino K, Fukuhara K, Nakagawa H, Hasegawa M, Sasaki R, Mizukami T, Miyata N, Suzuki T (2013) Lysine-specific demethylase 1-selective inactivators: protein-targeted drug delivery mechanism. Angew Chem Int Ed 52:8620–8624

    Article  CAS  Google Scholar 

  61. Kakizawa T, Mizukami T, Itoh Y, Hasegawa M, Sasaki R, Suzuki T (2016) Evaluation of phenylcyclopropylamine compounds by enzymatic assay of lysine-specific demethylase 2 in the presence of NPAC peptide. Bioorg Med Chem Lett 26:1193–1195

    Article  CAS  PubMed  Google Scholar 

  62. Sugino N, Kawahara M, Tatsumi G, Kanai A, Matsui H, Yamamoto R, Nagai Y, Fujii S, Shimazu Y, Hishizawa M, Inaba T, Andoh A, Suzuki T, Takaori-Kondo A (2017) A novel LSD1 inhibitor NCD38 ameliorates MDS-related leukemia with complex karyotype by attenuating leukemia programs via activating super-enhancers. Leukemia 31:2303–2314

    Article  CAS  PubMed  Google Scholar 

  63. Rao S, Zafar A (2014) Methods and compositions comprising lysine-specific demethylase inhibitors (LSD) for inhibiting growth of cancer stem cells. Patent Appl WO2014205511A1

    Google Scholar 

  64. Sareddy GR, Viswanadhapalli S, Surapaneni P, Suzuki T, Brenner A, Vadlamudi RK (2017) Novel KDM1A inhibitors induce differentiation and apoptosis of glioma stem cells via unfolded protein response pathway. Oncogene 36:2423–2434

    Article  CAS  PubMed  Google Scholar 

  65. Mohammad HP, Smitheman KN, Kamat CD, Soong D, Federowicz KE, van Aller GS, Schneck JL, Carson JD, Liu Y, Butticello M, Bonnette WG, Gorman SA, Degenhardt Y, Bai Y, McCabe MT, Pappalardi MB, Kasparec J, Tian X, McNulty KC, Rouse M, McDevitt P, Ho T, Crouthamel M, Hart TK, Concha NO, McHugh CF, Miller WH, Dhanak D, Tummino PJ, Carpenter CL, Johnson NW, Hann CL, Kruger RG (2015) A DNA hypomethylation signature predicts antitumor activity of LSD1 inhibitors in SCLC. Cancer Cell 28:57–69

    Article  CAS  PubMed  Google Scholar 

  66. Maes T, Mascaró C, Ortega A, Lunardi S, Ciceri F, Somervaille TC, Buesa C (2015) KDM1 histone lysine demethylases as targets for treatments of oncological and neurodegenerative disease. Epigenomics 7:609–626

    Article  CAS  PubMed  Google Scholar 

  67. Vianello P, Botrugno OA, Cappa A, Dal Zuffo R, Dessanti P, Mai A, Marrocco B, Mattevi A, Meroni G, Minucci S, Stazi G, Thaler F, Trifiró P, Valente S, Villa M, Varasi M, Mercurio C (2016) Discovery of a novel inhibitor of histone lysine-specific demethylase 1A (KDM1A/LSD1) as orally active antitumor agent. J Med Chem 59:1501–1517

    Article  CAS  PubMed  Google Scholar 

  68. Rotili D, Tomassi S, Conte M, Benedetti R, Tortorici M, Ciossani G, Valente S, Marrocco B, Labella D, Novellino E, Mattevi A, Altucci L, Tumber A, Yapp C, King ON, Hopkinson RJ, Kawamura A, Schofield CJ, Mai A (2014) Pan-histone demethylase inhibitors simultaneously targeting Jumonji C and lysine-specific demethylases display high anticancer activities. J Med Chem 57:42–55

    Article  CAS  PubMed  Google Scholar 

  69. Ota Y, Itoh Y, Kaise A, Ohta K, Endo Y, Masuda M, Sowa Y, Sakai T, Suzuki T (2016) Targeting cancer with PCPA-drug conjugates: LSD1 inhibition-triggered release of 4-hydroxytamoxifen. Angew Chem Int Ed 55:16115–16118

    Article  CAS  Google Scholar 

  70. Schmitt ML, Hauser AT, Carlino L, Pippel M, Schulz-Fincke J, Metzger E, Willmann D, Yiu T, Barton M, Schüle R, Sippl W, Jung M (2013) Nonpeptidic propargylamines as inhibitors of lysine specific demethylase 1 (LSD1) with cellular activity. J Med Chem 56:7334–7342

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  71. Lee MG, Wynder C, Schmidt DM, McCafferty DG, Shiekhattar R (2006) Histone H3 lysine 4 demethylation is a target of nonselective antidepressive medications. Chem Biol 13:563–567

    Article  CAS  PubMed  Google Scholar 

  72. Culhane JC, Wang D, Yen PM, Cole PA (2010) Comparative analysis of small molecules and histone substrate analogues as LSD1 lysine demethylase inhibitors. J Am Chem Soc 132:3164–3176

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  73. Prusevich P, Kalin JH, Ming SA, Basso M, Givens J, Li X, Hu J, Taylor MS, Cieniewicz AM, Hsiao PY, Huang R, Roberson H, Adejola N, Avery LB, Casero RA Jr, Taverna SD, Qian J, Tackett AJ, Ratan RR, McDonald OG, Feinberg AP, Cole PA (2014) A selective phenelzine analogue inhibitor of histone demethylase LSD1. ACS Chem Biol 9:1284–1293

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  74. Hazeldine S, Pachaiyappan B, Steinbergs N, Nowotarski S, Hanson AS, Casero RA Jr, Woster PM (2012) Low molecular weight amidoximes that act as potent inhibitors of lysine-specific demethylase 1. J Med Chem 55:7378–7391

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  75. Wu F, Zhou C, Yao Y, Wei L, Feng Z, Deng L, Song Y (2016) 3-(Piperidin-4-ylmethoxy)pyridine containing compounds are potent inhibitors of lysine specific demethylase 1. J Med Chem 59:253–263

    Article  CAS  PubMed  Google Scholar 

  76. Sorna V, Theisen ER, Stephens B, Warner SL, Bearss DJ, Vankayalapati H, Sharma S (2013) High-throughput virtual screening identifies novel N′-(1-phenylethylidene)-benzohydrazides as potent, specific, and reversible LSD1 inhibitors. J Med Chem 56:9496–9508

    Article  CAS  PubMed  Google Scholar 

  77. Baell JB, Holloway GA (2010) New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays. J Med Chem 53:2719–2740

    Article  CAS  PubMed  Google Scholar 

  78. Fiskus W, Sharma S, Shah B, Portier BP, Devaraj SG, Liu K, Iyer SP, Bearss D, Bhalla KN (2014) Highly effective combination of LSD1 (KDM1A) antagonist and pan-histone deacetylase inhibitor against human AML cells. Leukemia 28:2155–2164

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  79. Mould DP, Alli C, Bremberg U, Cartic S, Jordan AM, Geitmann M, Maiques-Diaz A, McGonagle AE, Somervaille TCP, Spencer GJ, Turlais F, Ogilvie DJ (2017) Development of (4-cyanophenyl)glycine derivatives as reversible inhibitors of lysine specific demethylase 1. J Med Chem 60:7984–7999

    Article  CAS  PubMed  Google Scholar 

  80. Mould DP, Bremberg U, Jordan AM, Geitmann M, Maiques-Diaz A, McGonagle AE, Small HF, Somervaille TCP, Ogilvie DJ (2017) Development of 5-hydroxypyrazole derivatives as reversible inhibitors of lysine specific demethylase 1. Bioorg Med Chem Lett 27:3190–3195

    Article  CAS  PubMed  Google Scholar 

  81. Mould DP, Bremberg U, Jordan AM, Geitmann M, McGonagle AE, Somervaille TCP, Spencer GJ, Ogilvie DJ (2017) Development and evaluation of 4-(pyrrolidin-3-yl)benzonitrile derivatives as inhibitors of lysine specific demethylase 1. Bioorg Med Chem Lett 27:4755–4759

    Article  CAS  PubMed  Google Scholar 

  82. Vianello P, Sartori L, Amigoni F, Cappa A, Fagá G, Fattori R, Legnaghi E, Ciossani G, Mattevi A, Meroni G, Moretti L, Cecatiello V, Pasqualato S, Romussi A, Thaler F, Trifiró P, Villa M, Botrugno OA, Dessanti P, Minucci S, Vultaggio S, Zagarrí E, Varasi M, Mercurio C (2017) Thieno[3,2-b]pyrrole-5-carboxamides as new reversible inhibitors of histone lysine demethylase KDM1A/LSD1. Part 2: structure-based drug design and structure-activity relationship. J Med Chem 60:1693–1715

    Article  CAS  PubMed  Google Scholar 

  83. Sartori L, Mercurio C, Amigoni F, Cappa A, Fagá G, Fattori R, Legnaghi E, Ciossani G, Mattevi A, Meroni G, Moretti L, Cecatiello V, Pasqualato S, Romussi A, Thaler F, Trifiró P, Villa M, Vultaggio S, Botrugno OA, Dessanti P, Minucci S, Zagarrí E, Carettoni D, Iuzzolino L, Varasi M, Vianello P (2017) Thieno[3,2-b]pyrrole-5-carboxamides as new reversible inhibitors of histone lysine demethylase KDM1A/LSD1. Part 1: high-throughput screening and preliminary exploration. J Med Chem 60:1673–1692

    Article  CAS  PubMed  Google Scholar 

  84. Speranzini V, Rotili D, Ciossani G, Pilotto S, Marrocco B, Forgione M, Lucidi A, Forneris F, Mehdipour P, Velankar S, Mai A, Mattevi A (2016) Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features. Sci Adv 2:e1601017

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Takayoshi Suzuki .

Editor information

Editors and Affiliations

Ethics declarations

Funding: This work was partially supported by the JST CREST program (T.S.; JPMJCR14L2).

Conflict of Interest: The author declares no conflict of interest.

Ethical Approval: Not applicable.

Informed Consent: Not applicable.

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Suzuki, T. (2019). Lysine-Specific Histone Demethylases 1/2 (LSD1/2) and Their Inhibitors. In: Mai, A. (eds) Chemical Epigenetics. Topics in Medicinal Chemistry, vol 33. Springer, Cham. https://doi.org/10.1007/7355_2019_74

Download citation

Publish with us

Policies and ethics