Abstract
G-protein-coupled receptors (GPCRs) mediate a wide variety of physiological functions and are a rich source of drug targets. In response to activation by extracellular stimuli, GPCRs trigger cytoplasmic signalling pathways through intracellular partners such as G-proteins and arrestins. This chapter provides a general overview of the molecular mechanisms of GPCR activation gleaned from crystal structures, biophysical experiments, and computational analyses. Furthermore, existing challenges and unresolved mechanistic questions about GPCR signalling are highlighted.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Vinothkumar KR, Henderson R (2010) Structures of membrane proteins. Q Rev Biophys 43(1):65–158
Fredriksson R, Lagerström MC, Lundin L-G, Schiöth HB (2003) The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints. Mol Pharmacol 63(6):1256–1272
Hilger D, Masureel M, Kobilka BK (2018) Structure and dynamics of GPCR signaling complexes. Nat Struct Mol Biol 25(1):4–12
Ritter SL, Hall RA (2009) Fine-tuning of GPCR activity by receptor-interacting proteins. Nat Rev Mol Cell Biol 10(12):819–830
Eichel K, von Zastrow M (2018) Subcellular organization of GPCR signaling. Trends Pharmacol Sci 39(2):200–208
Rajagopal S, Rajagopal K, Lefkowitz RJ (2010) Teaching old receptors new tricks: biasing seven-transmembrane receptors. Nat Rev Drug Discov 9(5):373–386
Tate CG, Schertler GFX (2009) Engineering G protein-coupled receptors to facilitate their structure determination. Curr Opin Struct Biol 19(4):386–395
Pándy-Szekeres G, Munk C, Tsonkov TM, Mordalski S, Harpsøe K, Hauser AS, Bojarski AJ, Gloriam DE (2018) GPCRdb in 2018: adding GPCR structure models and ligands. Nucleic Acids Res 46(D1):D440–D446
Rasmussen SGF, DeVree BT, Zou Y, Kruse AC, Chung KY, Kobilka TS, Thian FS et al (2011) Crystal structure of the β2 adrenergic receptor-Gs protein complex. Nature 477(7366):549–555
Carpenter B, Nehmé R, Warne T, Leslie AGW, Tate CG (2016) Structure of the adenosine A(2A) receptor bound to an engineered G protein. Nature 536(7614):104–107
Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A et al (2015) Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature 523(7562):561–567
Zhou XE, He Y, de Waal PW, Gao X, Kang Y, van Eps N, Yin Y et al (2017) Identification of phosphorylation codes for arrestin recruitment by G protein-coupled receptors. Cell 170(3):457–469.e13
Draper-Joyce CJ, Khoshouei M, Thal DM, Liang Y-L, Nguyen ATN, Furness SGB, Venugopal H et al (2018) Structure of the adenosine-bound human adenosine A receptor-G complex. Nature 558(7711):559–563
GarcÃa-NafrÃa J, Lee Y, Bai X, Carpenter B, Tate CG (2018) Cryo-EM structure of the adenosine A receptor coupled to an engineered heterotrimeric G protein. elife 7:e35946. https://doi.org/10.7554/eLife.35946
Koehl A, Hu H, Maeda S, Zhang Y, Qu Q, Paggi JM, Latorraca NR et al (2018) Structure of the μ-opioid receptor-G protein complex. Nature 558(7711):547–552
Liang Y-L, Khoshouei M, Radjainia M, Zhang Y, Glukhova A, Tarrasch J, Thal DM et al (2017) Phase-plate cryo-EM structure of a class B GPCR-G-protein complex. Nature 546(7656):118–123
Thal DM, Vuckovic Z, Draper-Joyce CJ, Liang Y-L, Glukhova A, Christopoulos A, Sexton PM (2018) Recent advances in the determination of G protein-coupled receptor structures. Curr Opin Struct Biol 51:28–34
Zhang Y, Sun B, Feng D, Hu H, Chu M, Qu Q, Tarrasch JT et al (2017) Cryo-EM structure of the activated GLP-1 receptor in complex with a G protein. Nature 546(7657):248–253
Ballesteros JA, Weinstein H (1995) [19] Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein-coupled receptors. Methods Neurosci 25:366–428
Venkatakrishnan AJ, Deupi X, Lebon G, Tate CG, Schertler GF, Babu MM (2013) Molecular signatures of G-protein-coupled receptors. Nature 494(7436):185–194
Ngo T, Ilatovskiy AV, Stewart AG, Coleman JLJ, McRobb FM, Riek RP, Graham RM, Abagyan R, Kufareva I, Smith NJ (2017) Orphan receptor ligand discovery by pickpocketing pharmacological neighbors. Nat Chem Biol 13(2):235–242
Wacker D, Stevens RC, Roth BL (2017) How ligands illuminate GPCR molecular pharmacology. Cell 170(3):414–427
Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SGF, Thian FS, Kobilka TS, Choi H-J et al (2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 318(5854):1258–1265
Haga K, Kruse AC, Asada H, Yurugi-Kobayashi T, Shiroishi M, Zhang C, Weis WI et al (2012) Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist. Nature 482(7386):547–551
Kruse AC, Ring AM, Manglik A, Hu J, Hu K, Eitel K, Hübner H et al (2013) Activation and allosteric modulation of a muscarinic acetylcholine receptor. Nature 504(7478):101–106
Jaakola V-P, Griffith MT, Hanson MA, Cherezov V, Chien EYT, Robert Lane J, Ijzerman AP, Stevens RC (2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science 322(5905):1211–1217
Choe H-W, Kim YJ, Park JH, Morizumi T, Pai EF, Krauss N, Hofmann KP, Scheerer P, Ernst OP (2011) Crystal structure of metarhodopsin II. Nature 471(7340):651–655
Palczewski K, Kumasaka T, Hori T, Behnke CA, Motoshima H, Fox BA, Le Trong I et al (2000) Crystal structure of rhodopsin: a G protein-coupled receptor. Science 289(5480):739–745
Huang W, Manglik A, Venkatakrishnan AJ, Laeremans T, Feinberg EN, Sanborn AL, Kato HE et al (2015) Structural insights into μ-opioid receptor activation. Nature 524(7565):315–321
Manglik A, Kruse AC, Kobilka TS, Thian FS, Mathiesen JM, Sunahara RK, Pardo L, Weis WI, Kobilka BK, Granier S (2012) Crystal structure of the μ-opioid receptor bound to a morphinan antagonist. Nature 485(7398):321–326
Che T, Majumdar S, Zaidi SA, Ondachi P, McCorvy JD, Wang S, Mosier PD et al (2018) Structure of the nanobody-stabilized active state of the kappa opioid receptor. Cell 172(1–2):55–67.e15
Wu H, Wacker D, Mileni M, Katritch V, Han GW, Vardy E, Liu W et al (2012) Structure of the human κ-opioid receptor in complex with JDTic. Nature 485(7398):327–332
Lebon G, Warne T, Edwards PC, Bennett K, Langmead CJ, Leslie AGW, Tate CG (2011) Agonist-bound adenosine A2A receptor structures reveal common features of GPCR activation. Nature 474(7352):521–525
Manglik A, Kruse AC (2017) Structural basis for G protein-coupled receptor activation. Biochemistry 56(42):5628–5634
Latorraca NR, Venkatakrishnan AJ, Dror RO (2017) GPCR dynamics: structures in motion. Chem Rev 117(1):139–155
Deupi X, Standfuss J (2011) Structural insights into agonist-induced activation of G-protein-coupled receptors. Curr Opin Struct Biol 21(4):541–551
Venkatakrishnan AJ, Deupi X, Lebon G, Heydenreich FM, Flock T, Miljus T, Balaji S et al (2016) Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region. Nature 536(7617):484–487
Flock T, Ravarani CNJ, Sun D, Venkatakrishnan AJ, Kayikci M, Tate CG, Veprintsev DB, Babu MM (2015) Universal allosteric mechanism for Gα activation by GPCRs. Nature 524(7564):173–179
Wootten D, Christopoulos A, Sexton PM (2013) Emerging paradigms in GPCR allostery: implications for drug discovery. Nat Rev Drug Discov 12(8):630–644
Thal DM, Glukhova A, Sexton PM, Christopoulos A (2018) Structural insights into G-protein-coupled receptor allostery. Nature 559(7712):45–53
Dror RO, Green HF, Valant C, Borhani DW, Valcourt JR, Pan AC, Arlow DH et al (2013) Structural basis for modulation of a G-protein-coupled receptor by allosteric drugs. Nature 503(7475):295–299
Hertig S, Latorraca NR, Dror RO (2016) Revealing atomic-level mechanisms of protein allostery with molecular dynamics simulations. PLoS Comput Biol 12(6):e1004746
Jazayeri A, Doré AS, Lamb D, Krishnamurthy H, Southall SM, Baig AH, Bortolato A et al (2016) Extra-helical binding site of a glucagon receptor antagonist. Nature 533(7602):274–277
Zheng Y, Qin L, ZacarÃas NVO, de Vries H, Han GW, Gustavsson M, Dabros M et al (2016) Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists. Nature 540(7633):458–461
Oswald C, Rappas M, Kean J, Doré AS, Errey JC, Bennett K, Deflorian F et al (2016) Intracellular allosteric antagonism of the CCR9 receptor. Nature 540(7633):462–465
Liu X, Ahn S, Kahsai AW, Meng K-C, Latorraca NR, Pani B, Venkatakrishnan AJ et al (2017) Mechanism of intracellular allosteric βAR antagonist revealed by X-ray crystal structure. Nature 548(7668):480–484
Katritch V, Fenalti G, Abola EE, Roth BL, Cherezov V, Stevens RC (2014) Allosteric sodium in class A GPCR signaling. Trends Biochem Sci 39(5):233–244
Moukhametzianov R, Warne T, Edwards PC, Serrano-Vega MJ, Leslie AGW, Tate CG, Schertler GFX (2011) Two distinct conformations of helix 6 observed in antagonist-bound structures of a beta1-adrenergic receptor. Proc Natl Acad Sci U S A 108(20):8228–8232
Manglik A, Kim TH, Masureel M, Altenbach C, Yang Z, Hilger D, Lerch MT et al (2015) Structural insights into the dynamic process of β2-adrenergic receptor signaling. Cell 161(5):1101–1111
Dror RO, Arlow DH, Borhani DW, Jensen MØ, Piana S, Shaw DE (2009) Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations. Proc Natl Acad Sci U S A 106(12):4689–4694
Wacker D, Wang C, Katritch V, Han GW, Huang X-P, Vardy E, McCorvy JD et al (2013) Structural features for functional selectivity at serotonin receptors. Science 340(6132):615–619
Wang C, Jiang Y, Ma J, Huixian W, Wacker D, Katritch V, Han GW et al (2013) Structural basis for molecular recognition at serotonin receptors. Science 340(6132):610–614
Dror RO, Arlow DH, Maragakis P, Mildorf TJ, Pan AC, Xu H, Borhani DW, Shaw DE (2011) Activation mechanism of the β2-adrenergic receptor. Proc Natl Acad Sci U S A 108(46):18684–18689
Weis WI, Kobilka BK (2018) The molecular basis of G protein-coupled receptor activation. Annu Rev Biochem 87:897–919
Latorraca NR, Wang JK, Bauer B, Townshend RJL, Hollingsworth SA, Olivieri JE, Xu HE, Sommer ME, Dror RO (2018) Molecular mechanism of GPCR-mediated arrestin activation. Nature 557(7705):452–456
Marino KA, Shang Y, Filizola M (2017) Insights into the function of opioid receptors from molecular dynamics simulations of available crystal structures. Br J Pharmacol 175:2834–2845. https://doi.org/10.1111/bph.13774
Vaidehi N, Bhattacharya S (2016) Allosteric communication pipelines in G-protein-coupled receptors. Curr Opin Pharmacol 30:76–83
RodrÃguez D, Ranganathan A, Carlsson J (2015) Discovery of GPCR ligands by molecular docking screening: novel opportunities provided by crystal structures. Curr Top Med Chem 15(24):2484–2503
Vaidehi N, Grisshammer R, Tate CG (2016) How can mutations thermostabilize G-protein-coupled receptors? Trends Pharmacol Sci 37(1):37–46
Venkatakrishnan AJ, Flock T, Prado DE, Oates ME, Gough J, Madan Babu M (2014) Structured and disordered facets of the GPCR fold. Curr Opin Struct Biol 27:129–137
Sente A, Peer R, Srivastava A, Baidya M, Lesk AM, Balaji S, Shukla AK, Babu MM, Flock T (2018) Molecular mechanism of modulating arrestin conformation by GPCR phosphorylation. Nat Struct Mol Biol 25(6):538–545
Acknowledgments
The author acknowledges Stanford ChEM-H seed grant, Dror Lab, and Kobilka Lab at Stanford for supporting his research and Guillaume Lebon, Naomi R. Latorraca, Siri van Keulen, and Jonas Kaindl for critically reading the manuscript. The author has no conflicts of interests.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Venkatakrishnan, A.J. (2019). Structure and Activation Mechanism of GPCRs. In: Lebon, G. (eds) Structure and Function of GPCRs. Topics in Medicinal Chemistry, vol 30. Springer, Cham. https://doi.org/10.1007/7355_2018_62
Download citation
DOI: https://doi.org/10.1007/7355_2018_62
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-24589-4
Online ISBN: 978-3-030-24591-7
eBook Packages: Chemistry and Materials ScienceChemistry and Material Science (R0)